Wall clock time and date at job start Tue Mar 31 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46838 * 2 1 4 4 H 1.08995 * 109.47219 * 304.99964 * 3 2 1 5 5 C 1.50703 * 109.47328 * 185.00145 * 3 2 1 6 6 H 1.07997 * 119.99675 * 240.00451 * 5 3 2 7 7 C 1.37875 * 120.00081 * 59.99459 * 5 3 2 8 8 N 1.31514 * 119.99789 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00021 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46910 * 60.00650 * 9 7 5 11 11 H 1.48499 * 109.47031 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47289 * 300.00517 * 9 7 5 13 13 N 1.46498 * 109.47161 * 64.99964 * 3 2 1 14 14 C 1.34770 * 120.00166 * 275.00252 * 13 3 2 15 15 O 1.21560 * 120.00046 * 359.97438 * 14 13 3 16 16 C 1.47792 * 120.00211 * 179.97438 * 14 13 3 17 17 C 1.39634 * 120.12892 * 0.02562 * 16 14 13 18 18 C 1.37869 * 119.86519 * 180.02562 * 17 16 14 19 19 C 1.38535 * 120.13319 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 119.86865 * 179.70142 * 19 18 17 21 21 C 1.38489 * 120.26481 * 359.97438 * 19 18 17 22 22 C 1.50700 * 119.93605 * 179.97438 * 21 19 18 23 23 C 1.37916 * 120.13110 * 0.02562 * 21 19 18 24 24 H 1.09000 * 109.47466 * 60.00525 * 1 2 3 25 25 H 1.09002 * 109.46779 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47220 * 299.99815 * 1 2 3 27 27 H 1.08998 * 109.47220 * 240.00185 * 2 1 3 28 28 H 1.08993 * 109.47487 * 119.99869 * 2 1 3 29 29 H 0.97006 * 119.99555 * 179.97438 * 8 7 5 30 30 H 0.96999 * 119.99945 * 94.99921 * 13 3 2 31 31 H 1.08000 * 120.06792 * 0.02562 * 17 16 14 32 32 H 1.08001 * 119.93385 * 180.02562 * 18 17 16 33 33 H 1.08997 * 109.47227 * 89.99715 * 22 21 19 34 34 H 1.08999 * 109.47005 * 210.00290 * 22 21 19 35 35 H 1.09001 * 109.46731 * 329.99402 * 22 21 19 36 36 H 1.08003 * 120.06802 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1732 9 14 6.0050 0.8803 -1.3811 10 1 6.5966 0.1455 -0.2343 11 1 6.3978 0.2170 -2.6503 12 1 6.5004 2.2801 -1.3808 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3412 2.6325 0.4320 16 6 0.0438 3.3245 2.6300 17 6 0.9335 3.3631 3.7055 18 6 0.5626 3.9800 4.8814 19 6 -0.6899 4.5604 4.9974 20 17 -1.1526 5.3286 6.4838 21 6 -1.5766 4.5253 3.9341 22 6 -2.9375 5.1584 4.0685 23 6 -1.2170 3.9111 2.7528 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8293 -0.0604 -2.9502 30 1 2.2718 2.1232 1.9978 31 1 1.9101 2.9107 3.6165 32 1 1.2500 4.0109 5.7139 33 1 -2.8858 6.2010 3.7548 34 1 -3.6502 4.6247 3.4398 35 1 -3.2608 5.1074 5.1082 36 1 -1.9091 3.8846 1.9241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138227002.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:02 Heat of formation + Delta-G solvation = -34.234510 kcal Electronic energy + Delta-G solvation = -19432.751605 eV Core-core repulsion = 16328.068762 eV Total energy + Delta-G solvation = -3104.682843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.01178 -38.39911 -36.54975 -35.10050 -33.28288 -32.26508 -31.27441 -30.42589 -27.34907 -26.74005 -23.96434 -22.74135 -22.06718 -20.21537 -19.35286 -17.73423 -16.70538 -16.13597 -15.63049 -15.10491 -14.69838 -14.61611 -14.20357 -14.07003 -13.50242 -13.17241 -12.72041 -12.61286 -12.51641 -12.20602 -12.01168 -11.64586 -11.51868 -11.31619 -11.26455 -11.02293 -10.86570 -10.83470 -10.35945 -10.21117 -9.66482 -9.18575 -9.08459 -8.98846 -8.72238 -8.52972 -7.88164 -6.15111 -4.25027 0.74255 1.18000 1.94421 3.08334 3.23902 3.29545 3.30362 3.94828 4.03982 4.33960 4.57351 4.63632 5.05341 5.14881 5.16352 5.21705 5.42298 5.46318 5.49960 5.77037 5.93579 6.07697 6.17742 6.32255 6.37210 6.43702 6.62991 6.64021 7.01855 7.16806 7.32000 7.38498 7.58282 7.69045 7.86154 8.14359 8.58595 8.72742 9.03469 9.42183 10.90170 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.003886 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.740457 B = 7202.880140 C = 7873.663297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.542 6.542 16 C -0.111 4.111 17 C -0.084 4.084 18 C -0.114 4.114 19 C -0.025 4.025 20 Cl -0.072 7.072 21 C -0.086 4.086 22 C -0.118 4.118 23 C -0.056 4.056 24 H 0.050 0.950 25 H 0.023 0.977 26 H 0.038 0.962 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 7.116 14.446 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.325 3.675 15 O -0.421 6.421 16 C -0.114 4.114 17 C -0.103 4.103 18 C -0.133 4.133 19 C -0.052 4.052 20 Cl -0.043 7.043 21 C -0.087 4.087 22 C -0.174 4.174 23 C -0.075 4.075 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.133 7.032 13.679 17.398 hybrid contribution 1.389 0.005 0.446 1.459 sum -6.744 7.036 14.125 17.161 Atomic orbital electron populations 1.21848 0.98328 0.98135 1.01237 1.21940 0.92643 0.99678 1.02385 1.18841 0.94313 0.89246 0.80750 0.93093 1.21179 0.90600 1.39314 1.06426 0.92119 1.24875 0.98637 0.94718 0.95334 1.69884 1.35260 1.37415 1.09300 0.86508 0.84783 0.78337 0.77487 1.20139 1.21105 1.20169 1.46479 1.14245 1.55256 1.18677 1.18078 0.83154 0.79528 0.86695 1.90750 1.51495 1.60056 1.39826 1.20484 0.95210 1.00404 0.95305 1.21356 0.99574 0.97553 0.91806 1.20946 0.94887 0.98678 0.98750 1.20977 0.95635 1.00590 0.87953 1.98350 1.92329 1.80098 1.33530 1.19717 0.96729 0.99794 0.92481 1.20863 0.92398 1.00791 1.03362 1.21153 0.95630 0.94164 0.96516 0.93086 0.95773 0.94320 0.88170 0.94974 0.92452 0.77882 0.84425 0.84545 0.90613 0.90828 0.90883 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.31 11.29 55.43 0.63 -23.68 16 9 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -14.18 4.97 -55.90 -0.28 -14.46 16 14 C 0.54 10.64 6.34 -12.36 -0.08 10.56 16 15 O -0.54 -12.38 13.48 5.31 0.07 -12.31 16 16 C -0.11 -1.72 5.87 -104.96 -0.62 -2.34 16 17 C -0.08 -1.08 9.54 -39.20 -0.37 -1.45 16 18 C -0.11 -1.29 9.81 -39.61 -0.39 -1.68 16 19 C -0.02 -0.29 6.32 -39.38 -0.25 -0.54 16 20 Cl -0.07 -0.73 27.27 -51.86 -1.41 -2.14 16 21 C -0.09 -1.03 5.88 -104.65 -0.62 -1.65 16 22 C -0.12 -1.09 9.61 36.01 0.35 -0.75 16 23 C -0.06 -0.78 9.24 -39.19 -0.36 -1.15 16 24 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 27 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 6.77 6.57 -40.82 -0.27 6.50 16 31 H 0.14 1.56 6.40 -52.49 -0.34 1.22 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.07 0.63 6.88 -51.93 -0.36 0.27 16 36 H 0.14 2.04 7.65 -52.48 -0.40 1.64 16 LS Contribution 311.84 15.07 4.70 4.70 Total: -1.00 -28.91 311.84 -8.45 -37.36 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.42 Total: 6.20 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.72 Total: -10.92 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.35 Total: -38.14 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.41 Total: -2.14 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.91 -8.45 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138227002.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.125 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds