Wall clock time and date at job start Tue Mar 31 2020 05:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47466 * 2 1 4 4 H 1.08996 * 109.47121 * 54.99543 * 3 2 1 5 5 C 1.50703 * 109.47337 * 174.99832 * 3 2 1 6 6 H 1.08003 * 120.00319 * 119.99470 * 5 3 2 7 7 C 1.37877 * 119.99826 * 300.00067 * 5 3 2 8 8 N 1.31519 * 119.99882 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00139 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47245 * 59.99381 * 9 7 5 11 11 H 1.48495 * 109.47567 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47324 * 300.00040 * 9 7 5 13 13 N 1.46500 * 109.46712 * 294.99678 * 3 2 1 14 14 C 1.34778 * 120.00230 * 85.00359 * 13 3 2 15 15 O 1.21557 * 119.99675 * 359.97438 * 14 13 3 16 16 C 1.47769 * 119.99993 * 179.97438 * 14 13 3 17 17 C 1.39619 * 120.15666 * 0.23302 * 16 14 13 18 18 C 1.37903 * 119.86618 * 180.27857 * 17 16 14 19 19 C 1.38424 * 120.18009 * 359.74296 * 18 17 16 20 20 C 1.38274 * 120.31575 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.93239 * 179.97438 * 20 19 18 22 22 C 1.38156 * 120.13119 * 359.95414 * 20 19 18 23 23 Cl 1.73599 * 120.09003 * 180.02562 * 22 20 19 24 24 H 1.08997 * 109.46748 * 300.00854 * 1 2 3 25 25 H 1.09009 * 109.46541 * 60.00109 * 1 2 3 26 26 H 1.08999 * 109.47654 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47324 * 239.98989 * 2 1 3 28 28 H 1.09009 * 109.46541 * 119.99891 * 2 1 3 29 29 H 0.96999 * 119.99457 * 180.02562 * 8 7 5 30 30 H 0.97006 * 119.99727 * 264.99942 * 13 3 2 31 31 H 1.08000 * 120.07292 * 0.02562 * 17 16 14 32 32 H 1.07994 * 119.91280 * 179.76600 * 18 17 16 33 33 H 1.08005 * 119.84227 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.46860 * 269.97369 * 21 20 19 35 35 H 1.08997 * 109.47579 * 29.97453 * 21 20 19 36 36 H 1.09000 * 109.47242 * 149.97503 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5420 1.4442 0.1239 6 1 4.1474 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3374 2.1734 9 14 6.0050 0.8798 1.3813 10 1 6.5006 2.2797 1.3809 11 1 6.3977 0.2165 2.6505 12 1 6.5967 0.1449 0.2345 13 7 1.6526 2.0973 -1.2519 14 6 0.4353 2.6643 -1.3671 15 8 -0.3412 2.6319 -0.4325 16 6 0.0447 3.3254 -2.6297 17 6 0.9322 3.3603 -3.7069 18 6 0.5637 3.9838 -4.8804 19 6 -0.6851 4.5700 -4.9945 20 6 -1.5717 4.5357 -3.9340 21 6 -2.9288 5.1773 -4.0675 22 6 -1.2161 3.9142 -2.7525 23 17 -2.3304 3.8712 -1.4220 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 3.8292 -0.0604 2.9503 30 1 2.2722 2.1229 -1.9978 31 1 1.9070 2.9034 -3.6200 32 1 1.2510 4.0145 -5.7128 33 1 -0.9682 5.0566 -5.9163 34 1 -2.8715 6.2181 -3.7490 35 1 -3.2511 5.1328 -5.1077 36 1 -3.6454 4.6449 -3.4421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162010184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:15 Heat of formation + Delta-G solvation = -22.910008 kcal Electronic energy + Delta-G solvation = -19798.320096 eV Core-core repulsion = 16694.128320 eV Total energy + Delta-G solvation = -3104.191776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92241 -38.23178 -36.14301 -34.99886 -33.19133 -32.19595 -31.16003 -30.38270 -27.28062 -26.70996 -23.96549 -22.71789 -21.82682 -20.22511 -19.26946 -17.70720 -16.50234 -16.04136 -15.53475 -15.05011 -14.68224 -14.58441 -14.11000 -13.93489 -13.67064 -12.97565 -12.66814 -12.48471 -12.44708 -11.83016 -11.74779 -11.55361 -11.42671 -11.30547 -11.22544 -10.99167 -10.81065 -10.61577 -10.27459 -10.14052 -9.58822 -9.04475 -8.86555 -8.77259 -8.62099 -8.47767 -7.78114 -6.11252 -4.20824 0.87991 1.14517 2.38963 3.20840 3.25937 3.31492 3.32361 3.99740 4.09352 4.36823 4.61641 4.74093 4.98499 5.15312 5.18883 5.20285 5.46894 5.49775 5.59030 5.67611 5.96062 6.13830 6.24304 6.29661 6.43019 6.50426 6.67542 6.70395 7.08094 7.23382 7.39301 7.46578 7.63321 7.74772 7.91812 8.19478 8.66448 8.78369 9.13053 9.46373 10.93996 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.004816 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.913712 B = 5812.253404 C = 6484.387391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.535 3.465 15 O -0.521 6.521 16 C -0.112 4.112 17 C -0.085 4.085 18 C -0.122 4.122 19 C -0.097 4.097 20 C -0.092 4.092 21 C -0.117 4.117 22 C 0.007 3.993 23 Cl -0.031 7.031 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.021 0.979 27 H 0.030 0.970 28 H 0.099 0.901 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 7.246 -14.382 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.320 3.680 15 O -0.399 6.399 16 C -0.116 4.116 17 C -0.104 4.104 18 C -0.140 4.140 19 C -0.116 4.116 20 C -0.093 4.093 21 C -0.173 4.173 22 C -0.021 4.021 23 Cl -0.001 7.001 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.498 7.090 -13.339 17.333 hybrid contribution 1.354 -0.065 -0.232 1.376 sum -7.144 7.025 -13.571 16.869 Atomic orbital electron populations 1.21838 0.98251 0.98008 1.01340 1.21935 0.92685 0.99724 1.02231 1.18800 0.94165 0.89178 0.80807 0.93116 1.21184 0.90684 1.39162 1.06332 0.92200 1.24873 0.98549 0.94791 0.95369 1.69888 1.35194 1.37496 1.09291 0.86523 0.84912 0.78297 0.77445 1.20204 1.21135 1.20179 1.46456 1.14253 1.55714 1.18591 1.17993 0.83375 0.79964 0.86690 1.90832 1.50749 1.58928 1.39378 1.20244 0.93734 1.01215 0.96440 1.21380 0.99125 0.97793 0.92079 1.21140 0.96672 0.98367 0.97869 1.21094 0.93414 0.99087 0.97956 1.19743 0.97777 0.99476 0.92297 1.20850 0.92815 1.00809 1.02872 1.20928 0.91575 0.99446 0.90179 1.98397 1.59994 1.96725 1.44996 0.93085 0.94218 0.95945 0.95100 0.88283 0.92508 0.78109 0.84645 0.85096 0.85162 0.90718 0.91187 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.65 4.97 -55.91 -0.28 -14.93 16 14 C 0.54 10.95 6.33 -12.36 -0.08 10.87 16 15 O -0.52 -12.09 11.10 5.32 0.06 -12.04 16 16 C -0.11 -1.86 5.88 -104.94 -0.62 -2.48 16 17 C -0.08 -1.12 9.54 -39.19 -0.37 -1.49 16 18 C -0.12 -1.29 10.03 -39.64 -0.40 -1.69 16 19 C -0.10 -0.99 9.69 -39.50 -0.38 -1.38 16 20 C -0.09 -1.12 5.88 -104.64 -0.62 -1.73 16 21 C -0.12 -1.10 9.61 36.01 0.35 -0.75 16 22 C 0.01 0.11 6.35 -39.07 -0.25 -0.14 16 23 Cl -0.03 -0.51 24.36 -51.86 -1.26 -1.77 16 24 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 25 H 0.04 0.88 5.64 -51.92 -0.29 0.59 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 2.67 5.95 -51.92 -0.31 2.36 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 6.97 6.57 -40.82 -0.27 6.70 16 31 H 0.14 1.59 6.41 -52.49 -0.34 1.25 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.07 0.74 6.90 -51.93 -0.36 0.39 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -30.01 307.68 -8.43 -38.43 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.44 Total: 4.98 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.74 Total: -10.79 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.35 Total: -38.93 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.06 Total: -12.04 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.26 Total: -1.77 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.01 -8.43 -38.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162010184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.524 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds