Wall clock time and date at job start Tue Mar 31 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99852 * 2 1 4 4 C 1.38986 * 119.99767 * 179.72515 * 2 1 3 5 5 C 1.39051 * 119.66733 * 4.72546 * 4 2 1 6 6 C 1.38466 * 119.24325 * 179.75395 * 5 4 2 7 7 C 1.38617 * 118.57685 * 0.50824 * 6 5 4 8 8 C 1.38857 * 119.26559 * 359.73475 * 7 6 5 9 9 N 1.39402 * 119.64727 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00069 * 174.91212 * 9 8 7 11 11 O 1.21279 * 119.99560 * 5.08947 * 10 9 8 12 12 C 1.50697 * 119.99899 * 185.08820 * 10 9 8 13 13 S 1.81007 * 109.46871 * 179.97438 * 12 10 9 14 14 C 1.76203 * 99.99905 * 180.02562 * 13 12 10 15 15 H 1.07995 * 119.99671 * 0.02562 * 14 13 12 16 16 C 1.38793 * 119.99821 * 180.02562 * 14 13 12 17 17 N 1.31633 * 120.00077 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00256 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46776 * 90.00387 * 18 16 14 20 20 H 1.48493 * 109.47255 * 210.00057 * 18 16 14 21 21 H 1.48497 * 109.46967 * 330.00577 * 18 16 14 22 22 N 1.32436 * 119.66447 * 184.99864 * 4 2 1 23 23 H 1.09000 * 109.46931 * 90.00068 * 1 2 3 24 24 H 1.09002 * 109.46888 * 210.00154 * 1 2 3 25 25 H 1.08999 * 109.47008 * 329.99766 * 1 2 3 26 26 H 1.09003 * 109.47172 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47130 * 120.00265 * 3 2 1 28 28 H 1.08997 * 109.47086 * 239.99785 * 3 2 1 29 29 H 1.07996 * 120.37782 * 0.02562 * 5 4 2 30 30 H 1.07995 * 120.71040 * 180.22340 * 6 5 4 31 31 H 1.07993 * 120.36427 * 179.74798 * 7 6 5 32 32 H 0.96998 * 119.99725 * 354.90745 * 9 8 7 33 33 H 1.08992 * 109.47249 * 300.00126 * 12 10 9 34 34 H 1.08998 * 109.46916 * 60.00483 * 12 10 9 35 35 H 0.96993 * 120.00161 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2037 0.0058 5 6 1.4612 -2.4022 -0.0880 6 6 2.1627 -3.5960 -0.0866 7 6 3.5441 -3.5533 0.0196 8 6 4.1798 -2.3224 0.1152 9 7 5.5686 -2.2702 0.2229 10 6 6.2010 -1.0800 0.2128 11 8 5.5580 -0.0518 0.2032 12 6 7.7071 -1.0270 0.2135 13 16 8.2499 0.6997 0.1978 14 6 9.9971 0.4711 0.2005 15 1 10.4111 -0.5263 0.2095 16 6 10.8411 1.5729 0.1912 17 7 12.1463 1.4022 0.1928 18 14 10.1248 3.2981 0.1751 19 1 9.9341 3.7679 1.5708 20 1 11.0553 4.2138 -0.5325 21 1 8.8157 3.2840 -0.5258 22 7 3.4805 -1.1977 0.1060 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.4892 2.0972 0.0005 27 1 2.8242 1.3265 0.8900 28 1 2.8242 1.3265 -0.8899 29 1 0.3840 -2.4018 -0.1655 30 1 1.6443 -4.5404 -0.1620 31 1 4.1196 -4.4671 0.0277 32 1 6.0799 -3.0904 0.3052 33 1 8.0875 -1.5197 1.1081 34 1 8.0889 -1.5355 -0.6717 35 1 12.7361 2.1722 0.1859 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183952323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:04 Heat of formation + Delta-G solvation = 30.096025 kcal Electronic energy + Delta-G solvation = -19033.033556 eV Core-core repulsion = 15965.476752 eV Total energy + Delta-G solvation = -3067.556804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65480 -38.95483 -36.61945 -34.30962 -32.44493 -32.27049 -30.32996 -28.85251 -27.92503 -25.62880 -25.36643 -23.16630 -21.66762 -20.38584 -18.19090 -17.64162 -16.80412 -16.23254 -15.69547 -15.57333 -15.51471 -15.02526 -14.97638 -14.16469 -13.92080 -13.56433 -13.43728 -13.15906 -12.80348 -12.61726 -12.50469 -12.18207 -12.15806 -11.70736 -11.27804 -11.01682 -10.74994 -10.63558 -10.03319 -9.98456 -9.81493 -9.00916 -8.84147 -8.71360 -8.51415 -7.46649 -6.92659 -6.29465 -4.01401 1.30767 1.50824 2.61529 2.88322 3.01415 3.23952 3.33066 3.50120 3.59167 4.05806 4.32390 4.48556 4.74056 4.82385 5.03298 5.09671 5.10265 5.12158 5.21040 5.26587 5.38665 5.44313 5.45079 5.73416 5.81289 5.87063 5.98308 6.09466 6.23191 6.28632 6.74647 6.79424 7.33274 7.40314 7.93604 8.26271 8.41215 8.54830 9.16641 10.79805 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.004015 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.777640 B = 6971.353485 C = 7965.768202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.617 5.617 3 C 0.108 3.892 4 C 0.429 3.571 5 C -0.279 4.279 6 C -0.009 4.009 7 C -0.274 4.274 8 C 0.417 3.583 9 N -0.665 5.665 10 C 0.518 3.482 11 O -0.448 6.448 12 C -0.124 4.124 13 S -0.138 6.138 14 C -0.522 4.522 15 H 0.089 0.911 16 C 0.096 3.904 17 N -0.880 5.880 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 N -0.529 5.529 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.417 0.583 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.663 -9.221 -0.412 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.331 5.331 3 C -0.035 4.035 4 C 0.193 3.807 5 C -0.305 4.305 6 C -0.035 4.035 7 C -0.300 4.300 8 C 0.183 3.817 9 N -0.312 5.312 10 C 0.302 3.698 11 O -0.315 6.315 12 C -0.275 4.275 13 S 0.088 5.912 14 C -0.669 4.669 15 H 0.107 0.893 16 C -0.113 4.113 17 N -0.517 5.517 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 N -0.252 5.252 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.254 0.746 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.104 -6.369 -0.379 23.969 hybrid contribution 0.679 -1.653 0.012 1.788 sum -22.424 -8.022 -0.367 23.819 Atomic orbital electron populations 1.21687 0.78681 1.02795 1.01309 1.46259 1.04851 1.03463 1.78521 1.21514 0.95915 0.82834 1.03229 1.18071 0.87494 0.85806 0.89318 1.21245 1.00616 0.91817 1.16866 1.20973 0.92972 0.97629 0.91965 1.21110 0.95585 0.96650 1.16661 1.18055 0.84267 0.88763 0.90604 1.43814 1.03896 1.10832 1.72669 1.20544 0.89846 0.83032 0.76334 1.90784 1.66855 1.32170 1.41647 1.23305 0.92725 1.05412 1.06019 1.84793 1.07058 1.01917 1.97418 1.22314 0.88089 0.97718 1.58821 0.89324 1.24704 0.94149 0.99246 0.93159 1.69936 1.02129 1.31577 1.48046 0.86738 0.81236 0.83970 0.79935 1.19195 1.19924 1.15913 1.67000 1.05905 1.29121 1.23177 0.93145 0.91253 0.91175 0.91848 0.91839 0.92191 0.85415 0.84969 0.85184 0.74640 0.88296 0.88208 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 10.03 59.85 0.60 1.38 16 2 N -0.62 -7.73 3.39 -189.69 -0.64 -8.37 16 3 C 0.11 1.42 10.18 59.85 0.61 2.03 16 4 C 0.43 6.17 7.37 -155.04 -1.14 5.03 16 5 C -0.28 -3.14 9.19 -39.20 -0.36 -3.50 16 6 C -0.01 -0.10 10.16 -39.36 -0.40 -0.49 16 7 C -0.27 -3.10 9.93 -39.21 -0.39 -3.49 16 8 C 0.42 6.21 7.42 -154.69 -1.15 5.06 16 9 N -0.66 -9.46 5.39 -11.45 -0.06 -9.52 16 10 C 0.52 9.56 7.81 -10.99 -0.09 9.48 16 11 O -0.45 -9.93 14.12 5.56 0.08 -9.85 16 12 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 13 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 14 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 15 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 16 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 17 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 18 Si 0.86 21.78 27.74 -169.99 -4.71 17.07 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 22 N -0.53 -9.04 7.09 -11.56 -0.08 -9.12 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.46 6.35 -51.93 -0.33 0.13 16 25 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 26 H 0.06 0.62 7.79 -51.93 -0.40 0.21 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.13 1.09 6.24 -52.49 -0.33 0.76 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.42 4.18 8.70 -40.82 -0.36 3.83 16 33 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 35 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -35.84 315.15 -8.14 -43.97 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.36 Total: 1.01 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -1.88 Total: 1.36 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.01 Total: -52.82 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.84 -8.14 -43.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183952323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.068 kcal (2) G-P(sol) polarization free energy of solvation -35.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds