Wall clock time and date at job start Tue Mar 31 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99852 * 2 1 4 4 C 1.38986 * 119.99767 * 179.72515 * 2 1 3 5 5 C 1.39051 * 119.66733 * 4.72546 * 4 2 1 6 6 C 1.38466 * 119.24325 * 179.75395 * 5 4 2 7 7 C 1.38617 * 118.57685 * 0.50824 * 6 5 4 8 8 C 1.38857 * 119.26559 * 359.73475 * 7 6 5 9 9 N 1.39402 * 119.64727 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00069 * 174.91212 * 9 8 7 11 11 O 1.21279 * 119.99560 * 5.08947 * 10 9 8 12 12 C 1.50697 * 119.99899 * 185.08820 * 10 9 8 13 13 S 1.81007 * 109.46871 * 179.97438 * 12 10 9 14 14 C 1.76203 * 99.99905 * 180.02562 * 13 12 10 15 15 H 1.07995 * 119.99671 * 0.02562 * 14 13 12 16 16 C 1.38793 * 119.99821 * 180.02562 * 14 13 12 17 17 N 1.31633 * 120.00077 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00256 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46776 * 90.00387 * 18 16 14 20 20 H 1.48493 * 109.47255 * 210.00057 * 18 16 14 21 21 H 1.48497 * 109.46967 * 330.00577 * 18 16 14 22 22 N 1.32436 * 119.66447 * 184.99864 * 4 2 1 23 23 H 1.09000 * 109.46931 * 90.00068 * 1 2 3 24 24 H 1.09002 * 109.46888 * 210.00154 * 1 2 3 25 25 H 1.08999 * 109.47008 * 329.99766 * 1 2 3 26 26 H 1.09003 * 109.47172 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47130 * 120.00265 * 3 2 1 28 28 H 1.08997 * 109.47086 * 239.99785 * 3 2 1 29 29 H 1.07996 * 120.37782 * 0.02562 * 5 4 2 30 30 H 1.07995 * 120.71040 * 180.22340 * 6 5 4 31 31 H 1.07993 * 120.36427 * 179.74798 * 7 6 5 32 32 H 0.96998 * 119.99725 * 354.90745 * 9 8 7 33 33 H 1.08992 * 109.47249 * 300.00126 * 12 10 9 34 34 H 1.08998 * 109.46916 * 60.00483 * 12 10 9 35 35 H 0.96993 * 120.00161 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2037 0.0058 5 6 1.4612 -2.4022 -0.0880 6 6 2.1627 -3.5960 -0.0866 7 6 3.5441 -3.5533 0.0196 8 6 4.1798 -2.3224 0.1152 9 7 5.5686 -2.2702 0.2229 10 6 6.2010 -1.0800 0.2128 11 8 5.5580 -0.0518 0.2032 12 6 7.7071 -1.0270 0.2135 13 16 8.2499 0.6997 0.1978 14 6 9.9971 0.4711 0.2005 15 1 10.4111 -0.5263 0.2095 16 6 10.8411 1.5729 0.1912 17 7 12.1463 1.4022 0.1928 18 14 10.1248 3.2981 0.1751 19 1 9.9341 3.7679 1.5708 20 1 11.0553 4.2138 -0.5325 21 1 8.8157 3.2840 -0.5258 22 7 3.4805 -1.1977 0.1060 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.4892 2.0972 0.0005 27 1 2.8242 1.3265 0.8900 28 1 2.8242 1.3265 -0.8899 29 1 0.3840 -2.4018 -0.1655 30 1 1.6443 -4.5404 -0.1620 31 1 4.1196 -4.4671 0.0277 32 1 6.0799 -3.0904 0.3052 33 1 8.0875 -1.5197 1.1081 34 1 8.0889 -1.5355 -0.6717 35 1 12.7361 2.1722 0.1859 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183952323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:04 Heat of formation + Delta-G solvation = 5.883539 kcal Electronic energy + Delta-G solvation = -19034.083488 eV Core-core repulsion = 15965.476752 eV Total energy + Delta-G solvation = -3068.606736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.72666 -40.18727 -37.60040 -35.49366 -34.68255 -33.22296 -31.61397 -30.01672 -28.80059 -27.86076 -26.26774 -24.22109 -22.61498 -21.65571 -19.93002 -18.93761 -18.12362 -17.31905 -17.08722 -16.80435 -16.70391 -16.45630 -16.11075 -15.83529 -15.05130 -14.95527 -14.80242 -14.63776 -14.00833 -13.62501 -13.48089 -13.36648 -13.22678 -13.05518 -13.02944 -12.68461 -12.47624 -11.91023 -11.89173 -11.29766 -11.18294 -10.90016 -10.55478 -9.97238 -9.79139 -9.01317 -8.52729 -8.37350 -6.23550 0.30560 0.64082 0.94252 1.30014 1.43679 1.51561 1.65245 1.92690 2.17776 2.24196 2.68015 2.85604 3.08562 3.49945 3.94108 4.09280 4.20257 4.21485 4.37437 4.40369 4.43413 4.49998 4.54238 4.58314 4.78961 4.89056 4.99466 5.05355 5.32265 5.44312 5.69909 5.78746 5.86989 6.10713 6.35191 6.41484 6.92572 7.06289 7.47268 8.59756 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.004015 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.777640 B = 6971.353485 C = 7965.768202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.626 5.626 3 C 0.118 3.882 4 C 0.396 3.604 5 C -0.269 4.269 6 C -0.006 4.006 7 C -0.260 4.260 8 C 0.378 3.622 9 N -0.647 5.647 10 C 0.522 3.478 11 O -0.494 6.494 12 C -0.108 4.108 13 S -0.173 6.173 14 C -0.529 4.529 15 H 0.064 0.936 16 C 0.047 3.953 17 N -0.917 5.917 18 Si 0.913 3.087 19 H -0.262 1.262 20 H -0.258 1.258 21 H -0.239 1.239 22 N -0.577 5.577 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.030 0.970 28 H 0.029 0.971 29 H 0.158 0.842 30 H 0.177 0.823 31 H 0.163 0.837 32 H 0.436 0.564 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.416 -10.955 -0.528 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.341 5.341 3 C -0.026 4.026 4 C 0.161 3.839 5 C -0.294 4.294 6 C -0.032 4.032 7 C -0.285 4.285 8 C 0.146 3.854 9 N -0.296 5.296 10 C 0.307 3.693 11 O -0.364 6.364 12 C -0.259 4.259 13 S 0.053 5.947 14 C -0.676 4.676 15 H 0.083 0.917 16 C -0.158 4.158 17 N -0.555 5.555 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.182 1.182 21 H -0.163 1.163 22 N -0.301 5.301 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.175 0.825 30 H 0.194 0.806 31 H 0.181 0.819 32 H 0.276 0.724 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.880 -8.166 -0.495 27.142 hybrid contribution 1.399 -1.317 0.048 1.922 sum -24.481 -9.482 -0.447 26.257 Atomic orbital electron populations 1.21935 0.75963 1.04352 1.02486 1.46531 1.06444 1.02578 1.78521 1.21292 0.96245 0.84937 1.00077 1.18577 0.87169 0.87523 0.90677 1.21639 1.02112 0.90997 1.14682 1.21537 0.92518 0.98967 0.90181 1.21493 0.96512 0.96213 1.14328 1.18430 0.84023 0.89831 0.93071 1.43446 1.04349 1.10099 1.71750 1.20303 0.89175 0.83806 0.75991 1.90780 1.67438 1.33981 1.44216 1.23264 0.93822 1.00991 1.07837 1.84754 1.04585 1.07754 1.97582 1.22459 0.90148 0.96783 1.58231 0.91740 1.25530 0.94503 1.02910 0.92894 1.70010 1.03296 1.32999 1.49159 0.85884 0.80572 0.79822 0.80198 1.18708 1.18230 1.16251 1.66833 1.07789 1.31134 1.24387 0.91996 0.89746 0.89645 0.88463 0.95147 0.95265 0.82472 0.80604 0.81931 0.72361 0.86368 0.86438 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 10.03 127.77 1.28 2.54 16 2 N -0.63 -15.32 3.39 -754.04 -2.56 -17.88 16 3 C 0.12 3.23 10.18 127.77 1.30 4.53 16 4 C 0.40 11.06 7.37 133.04 0.98 12.04 16 5 C -0.27 -5.19 9.19 22.52 0.21 -4.99 16 6 C -0.01 -0.10 10.16 22.41 0.23 0.13 16 7 C -0.26 -5.01 9.93 22.51 0.22 -4.79 16 8 C 0.38 10.86 7.42 132.85 0.99 11.84 16 9 N -0.65 -17.80 5.39 -308.53 -1.66 -19.46 16 10 C 0.52 19.38 7.81 87.66 0.68 20.07 16 11 O -0.49 -22.65 14.12 -3.03 -0.04 -22.70 16 12 C -0.11 -4.14 6.16 71.23 0.44 -3.70 16 13 S -0.17 -8.88 18.55 -56.49 -1.05 -9.93 16 14 C -0.53 -30.97 10.04 67.95 0.68 -30.29 16 15 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16 16 C 0.05 2.79 5.50 84.86 0.47 3.25 16 17 N -0.92 -56.13 13.97 21.65 0.30 -55.83 16 18 Si 0.91 45.51 27.74 68.60 1.90 47.41 16 19 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.24 -11.93 6.74 99.48 0.67 -11.26 16 22 N -0.58 -19.91 7.09 -190.47 -1.35 -21.26 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.08 0.85 6.35 -2.39 -0.02 0.84 16 25 H 0.08 0.87 7.92 -2.39 -0.02 0.85 16 26 H 0.10 1.87 7.79 -2.39 -0.02 1.85 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.16 2.00 6.24 -2.91 -0.02 1.98 16 30 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 31 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.44 7.89 8.70 -92.71 -0.81 7.08 16 33 H 0.12 4.07 8.14 -2.40 -0.02 4.05 16 34 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 35 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -81.62 315.15 3.29 -78.33 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.27 Total: 10.68 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 7.48 Total: 10.64 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -5.27 Total: -114.43 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.04 Total: -22.70 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -81.62 3.29 -78.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183952323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.213 kcal (2) G-P(sol) polarization free energy of solvation -81.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds