Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 S 1.81002 * 109.47156 * 179.97438 * 15 13 3 17 17 C 1.76193 * 100.00049 * 180.02562 * 16 15 13 18 18 N 1.32561 * 119.22481 * 359.72684 * 17 16 15 19 19 C 1.32254 * 120.73551 * 179.71922 * 18 17 16 20 20 C 1.38624 * 119.20200 * 0.54564 * 19 18 17 21 21 C 1.38619 * 118.57093 * 359.73398 * 20 19 18 22 22 N 1.32255 * 119.20153 * 359.97438 * 21 20 19 23 23 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 25 25 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 26 26 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 27 27 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 28 28 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 29 29 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 30 30 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 33 33 H 1.07996 * 120.40190 * 180.27953 * 19 18 17 34 34 H 1.08007 * 120.71480 * 179.75357 * 20 19 18 35 35 H 1.08007 * 120.39960 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 16 2.3848 2.4146 3.8481 17 6 2.0126 1.3582 5.2082 18 7 1.5728 0.1301 4.9724 19 6 1.2897 -0.6898 5.9708 20 6 1.4470 -0.2470 7.2749 21 6 1.9034 1.0448 7.4860 22 7 2.1741 1.8119 6.4432 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5818 1.6876 -2.0283 29 1 2.0956 3.1410 -1.1384 30 1 3.6747 3.5148 -4.4447 31 1 0.9443 1.0114 2.5302 32 1 2.6227 0.4186 2.5299 33 1 0.9360 -1.6907 5.7724 34 1 1.2192 -0.8947 8.1087 35 1 2.0371 1.4200 8.4899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193553249.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = 14.763798 kcal Electronic energy + Delta-G solvation = -19064.041749 eV Core-core repulsion = 15995.820090 eV Total energy + Delta-G solvation = -3068.221659 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.91932 -39.09494 -35.39721 -33.95729 -32.86816 -32.26651 -30.27884 -29.84982 -26.72170 -24.76274 -24.70332 -23.07025 -22.62394 -19.12826 -18.14354 -17.59767 -16.65525 -16.35162 -16.17306 -15.58654 -15.32433 -14.89444 -14.74248 -14.18734 -13.76968 -13.56820 -13.43016 -13.20468 -12.71521 -12.04908 -12.03251 -11.65354 -11.32887 -11.15323 -11.10397 -10.90833 -10.77364 -10.59119 -10.38458 -10.33362 -10.14485 -9.64491 -9.50378 -9.11814 -8.44734 -7.80667 -7.67309 -6.05635 -4.10406 0.56781 0.87787 1.18813 2.13311 3.24061 3.30023 3.38105 3.42349 3.46928 3.85474 3.99117 4.32616 4.44126 4.47786 4.83387 4.87573 4.92095 5.18325 5.28383 5.29319 5.48285 5.54037 5.61290 5.75503 6.01291 6.02184 6.20296 6.46380 6.70032 6.98514 7.40132 7.47539 7.67998 7.90243 8.20621 8.29050 8.81836 8.98241 9.54767 11.02571 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026949 B = 0.003905 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.765423 B = 7168.891772 C = 7576.145963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.588 5.588 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.521 3.479 14 O -0.527 6.527 15 C -0.148 4.148 16 S 0.093 5.907 17 C 0.281 3.719 18 N -0.530 5.530 19 C 0.163 3.837 20 C -0.248 4.248 21 C 0.163 3.837 22 N -0.505 5.505 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.169 0.831 34 H 0.146 0.854 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 -10.492 18.867 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.320 5.320 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.305 3.695 14 O -0.405 6.405 15 C -0.300 4.300 16 S 0.329 5.671 17 C -0.094 4.094 18 N -0.248 5.248 19 C -0.006 4.006 20 C -0.275 4.275 21 C -0.007 4.007 22 N -0.222 5.222 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.186 0.814 34 H 0.164 0.836 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.024 -7.971 17.734 20.355 hybrid contribution 0.209 -2.315 0.517 2.382 sum -5.815 -10.287 18.251 21.742 Atomic orbital electron populations 1.22212 0.96609 1.01548 1.02347 1.21484 0.93670 0.83925 1.02952 1.48174 1.63196 1.13376 1.07217 1.19344 0.96483 0.93720 0.77697 1.21463 0.96830 1.32012 1.06310 0.92329 1.24931 0.97908 0.94866 0.96368 1.69941 1.35610 1.33449 1.14297 0.86434 0.84565 0.78103 0.78279 1.19784 1.20972 1.20829 1.19411 0.79241 0.86725 0.84159 1.90725 1.45683 1.17568 1.86516 1.23933 1.07681 1.03039 0.95322 1.86785 1.78858 1.12103 0.89346 1.25762 0.93806 0.92826 0.96962 1.68923 1.15177 1.03990 1.36692 1.23223 0.90127 0.98764 0.88518 1.22768 1.06058 0.99100 0.99584 1.23272 0.89163 0.90052 0.98224 1.68550 1.18104 1.37156 0.98368 0.92039 0.93085 0.91934 0.89655 0.91530 0.94706 0.93684 0.92735 0.86490 0.86433 0.81373 0.83585 0.81253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.10 1.63 5.93 -4.05 -0.02 1.61 16 3 N -0.59 -12.26 2.46 -175.06 -0.43 -12.69 16 4 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 C 0.52 10.86 7.69 -10.98 -0.08 10.77 16 14 O -0.53 -13.27 15.44 5.56 0.09 -13.18 16 15 C -0.15 -2.34 3.84 36.01 0.14 -2.21 16 16 S 0.09 1.52 21.38 -107.50 -2.30 -0.78 16 17 C 0.28 4.05 7.85 -90.83 -0.71 3.34 16 18 N -0.53 -6.72 9.14 -13.44 -0.12 -6.84 16 19 C 0.16 1.47 11.30 -17.23 -0.19 1.27 16 20 C -0.25 -1.85 10.16 -39.30 -0.40 -2.25 16 21 C 0.16 1.51 11.30 -17.23 -0.19 1.31 16 22 N -0.50 -6.82 10.40 -13.44 -0.14 -6.96 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 27 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 28 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.12 1.64 7.15 -51.92 -0.37 1.27 16 32 H 0.12 1.72 7.37 -51.91 -0.38 1.33 16 33 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 35 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -34.53 319.62 -8.26 -42.79 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.35 Total: -3.08 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.54 Total: 4.80 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.04 Total: -52.23 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.30 Total: -0.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.53 -8.26 -42.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193553249.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.553 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds