Wall clock time and date at job start Tue Mar 31 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37097 * 120.00093 * 2 1 4 4 H 1.07997 * 120.00657 * 142.82271 * 3 2 1 5 5 C 1.38950 * 119.99811 * 322.81709 * 3 2 1 6 6 N 1.31413 * 120.00108 * 158.41510 * 5 3 2 7 7 Si 1.86808 * 120.00030 * 338.41677 * 5 3 2 8 8 H 1.48496 * 109.46962 * 95.71979 * 7 5 3 9 9 H 1.48494 * 109.46981 * 215.72180 * 7 5 3 10 10 H 1.48499 * 109.46930 * 335.71811 * 7 5 3 11 11 C 1.34773 * 119.99942 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99885 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00119 * 0.02562 * 11 2 1 14 14 H 1.08999 * 115.56213 * 325.68302 * 13 11 2 15 15 C 1.53000 * 117.49910 * 111.37328 * 13 11 2 16 16 C 1.53001 * 60.00112 * 107.49001 * 15 13 11 17 17 H 1.08999 * 117.49787 * 252.48942 * 16 15 13 18 18 C 1.50703 * 117.50173 * 107.48717 * 16 15 13 19 19 C 1.38252 * 119.99736 * 351.11897 * 18 16 15 20 20 C 1.38216 * 120.06890 * 179.71799 * 19 18 16 21 21 C 1.38257 * 120.06714 * 0.55518 * 20 19 18 22 22 C 1.38363 * 120.00523 * 359.72407 * 21 20 19 23 23 F 1.35091 * 120.03987 * 180.02562 * 22 21 20 24 24 C 1.38368 * 119.99922 * 171.39149 * 18 16 15 25 25 F 1.35101 * 120.03640 * 0.02601 * 24 18 16 26 26 H 1.09002 * 109.46966 * 265.13421 * 1 2 3 27 27 H 1.08996 * 109.47293 * 25.13237 * 1 2 3 28 28 H 1.09004 * 109.47158 * 145.13654 * 1 2 3 29 29 H 0.96999 * 120.00116 * 180.02562 * 6 5 3 30 30 H 1.08992 * 117.50147 * 359.97438 * 15 13 11 31 31 H 1.09000 * 117.51401 * 214.97037 * 15 13 11 32 32 H 1.08002 * 119.96656 * 359.97438 * 19 18 16 33 33 H 1.08000 * 119.96639 * 180.25412 * 20 19 18 34 34 H 1.08003 * 119.99891 * 179.69671 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0658 1.2824 0.5651 5 6 1.6676 2.2683 -0.7273 6 7 2.0434 3.4889 -0.4179 7 14 0.4840 1.9865 -2.1448 8 1 -0.9112 2.1585 -1.6664 9 1 0.7618 2.9678 -3.2241 10 1 0.6608 0.6090 -2.6708 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0005 14 1 0.4466 -2.4734 0.5545 15 6 1.4609 -3.3317 -1.2631 16 6 2.2075 -3.7627 0.0010 17 1 3.2933 -3.6680 0.0012 18 6 1.6574 -4.9379 0.7675 19 6 0.4252 -5.4669 0.4311 20 6 -0.0781 -6.5484 1.1293 21 6 0.6445 -7.0962 2.1729 22 6 1.8754 -6.5654 2.5158 23 9 2.5823 -7.1004 3.5352 24 6 2.3830 -5.4838 1.8115 25 9 3.5845 -4.9636 2.1447 26 1 -0.3633 -0.0872 1.0240 27 1 -0.3633 0.9303 -0.4364 28 1 -0.3634 -0.8432 -0.5875 29 1 1.7060 4.2436 -0.9253 30 1 2.0553 -2.9529 -2.0945 31 1 0.5722 -3.8984 -1.5405 32 1 -0.1429 -5.0372 -0.3808 33 1 -1.0390 -6.9629 0.8624 34 1 0.2479 -7.9381 2.7209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265928102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:41 Heat of formation + Delta-G solvation = -78.135088 kcal Electronic energy + Delta-G solvation = -21406.913677 eV Core-core repulsion = 17748.530482 eV Total energy + Delta-G solvation = -3658.383195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.51364 -49.60709 -41.16772 -39.93878 -37.53832 -36.54820 -34.13963 -31.72993 -31.23293 -28.38014 -27.49510 -25.38739 -24.40757 -23.57570 -21.84430 -20.32451 -19.12774 -19.04615 -18.46895 -18.00636 -17.65277 -17.40310 -17.25281 -16.21657 -16.07787 -15.98076 -15.76444 -15.48850 -15.25379 -14.61092 -14.46559 -14.05726 -14.01592 -13.70378 -13.40488 -13.31637 -13.13896 -12.67881 -12.59564 -12.28073 -12.18222 -11.83961 -11.69234 -11.53280 -11.06406 -10.46702 -9.74804 -9.74442 -9.71546 -8.54196 -6.18531 -0.05944 -0.03917 1.20427 1.32985 1.47964 1.75249 2.17756 2.32679 2.61883 2.74543 2.88298 3.06896 3.31739 3.47835 3.65992 3.79760 3.88013 3.96043 4.10047 4.22601 4.24595 4.37057 4.62286 4.70668 4.79221 4.83997 4.86480 4.97979 5.03414 5.07764 5.26290 5.36470 5.50621 5.80213 5.98923 6.52953 6.90060 7.25707 7.83901 8.63514 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.031543 B = 0.004225 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.472327 B = 6625.670638 C = 7074.973754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.477 5.477 3 C -0.344 4.344 4 H 0.035 0.965 5 C 0.008 3.992 6 N -0.913 5.913 7 Si 0.962 3.038 8 H -0.234 1.234 9 H -0.291 1.291 10 H -0.251 1.251 11 C 0.476 3.524 12 O -0.625 6.625 13 C -0.167 4.167 14 H 0.155 0.845 15 C -0.109 4.109 16 C -0.108 4.108 17 H 0.085 0.915 18 C -0.060 4.060 19 C -0.092 4.092 20 C -0.075 4.075 21 C -0.122 4.122 22 C 0.046 3.954 23 F -0.145 7.145 24 C 0.031 3.969 25 F -0.154 7.154 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.282 0.718 30 H 0.091 0.909 31 H 0.163 0.837 32 H 0.178 0.822 33 H 0.190 0.810 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.874 -23.047 -1.338 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.198 5.198 3 C -0.472 4.472 4 H 0.053 0.947 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.784 3.216 8 H -0.158 1.158 9 H -0.218 1.218 10 H -0.175 1.175 11 C 0.267 3.733 12 O -0.510 6.510 13 C -0.188 4.188 14 H 0.172 0.828 15 C -0.146 4.146 16 C -0.127 4.127 17 H 0.104 0.896 18 C -0.061 4.061 19 C -0.110 4.110 20 C -0.093 4.093 21 C -0.141 4.141 22 C 0.026 3.974 23 F -0.123 7.123 24 C 0.011 3.989 25 F -0.132 7.132 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.180 0.820 32 H 0.195 0.805 33 H 0.207 0.793 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.217 -22.798 -1.284 26.898 hybrid contribution 1.455 1.030 0.354 1.818 sum -12.761 -21.768 -0.930 25.250 Atomic orbital electron populations 1.22298 0.79623 1.03166 1.03397 1.43716 1.06345 1.04174 1.65590 1.18656 1.09473 0.88286 1.30817 0.94706 1.26310 1.00060 0.93567 0.99436 1.69886 1.46033 0.99405 1.39691 0.85651 0.79093 0.79214 0.77652 1.15844 1.21806 1.17484 1.20478 0.87310 0.85727 0.79821 1.90528 1.16896 1.87969 1.55648 1.22358 1.01799 0.87670 1.06940 0.82795 1.23333 1.03261 0.98679 0.89284 1.20732 0.98175 0.91789 1.02025 0.89623 1.19140 0.96208 0.96359 0.94426 1.21498 0.92571 0.96085 1.00833 1.21601 1.01083 0.94059 0.92545 1.21529 0.91008 1.01922 0.99592 1.18045 0.94207 0.95591 0.89510 1.91479 1.78598 1.85087 1.57170 1.18082 0.83856 0.97200 0.99719 1.91471 1.43505 1.86285 1.91986 0.90901 0.92454 0.87642 0.90881 0.89080 0.81961 0.80529 0.79296 0.80785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.00 8.50 127.77 1.09 3.09 16 2 N -0.48 -23.54 2.59 -658.91 -1.70 -25.24 16 3 C -0.34 -20.97 9.37 84.04 0.79 -20.18 16 4 H 0.03 2.52 7.90 -2.91 -0.02 2.50 16 5 C 0.01 0.47 5.29 84.93 0.45 0.92 16 6 N -0.91 -55.24 13.96 21.66 0.30 -54.94 16 7 Si 0.96 41.05 24.96 68.60 1.71 42.76 16 8 H -0.23 -8.46 6.69 99.48 0.67 -7.79 16 9 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 11 C 0.48 22.94 7.41 87.66 0.65 23.59 16 12 O -0.62 -37.22 16.12 -3.07 -0.05 -37.27 16 13 C -0.17 -5.28 4.46 -11.54 -0.05 -5.33 16 14 H 0.15 3.70 7.35 -2.39 -0.02 3.68 16 15 C -0.11 -2.54 9.56 30.59 0.29 -2.25 16 16 C -0.11 -3.27 5.31 -11.54 -0.06 -3.33 16 17 H 0.09 3.36 7.39 -2.39 -0.02 3.35 16 18 C -0.06 -1.44 5.62 -19.83 -0.11 -1.55 16 19 C -0.09 -1.20 9.29 22.27 0.21 -0.99 16 20 C -0.08 -0.65 10.04 22.27 0.22 -0.43 16 21 C -0.12 -1.62 10.02 22.30 0.22 -1.39 16 22 C 0.05 1.08 7.31 22.41 0.16 1.24 16 23 F -0.14 -3.84 17.18 44.97 0.77 -3.06 16 24 C 0.03 0.90 7.25 22.41 0.16 1.06 16 25 F -0.15 -5.66 16.53 44.97 0.74 -4.92 16 26 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.06 2.12 3.42 -2.39 -0.01 2.11 16 28 H 0.11 2.68 6.92 -2.39 -0.02 2.66 16 29 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.16 1.86 6.18 -2.39 -0.01 1.85 16 32 H 0.18 1.04 6.03 -2.91 -0.02 1.02 16 33 H 0.19 -0.06 8.06 -2.91 -0.02 -0.08 16 34 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -86.53 297.59 6.91 -79.62 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.11 Total: 8.60 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 4.02 Total: -5.55 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.40 Total: -80.18 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.05 Total: -37.27 kcal Atomic # 9 Polarization: -9.50 SS G_CDS: 1.52 Total: -7.98 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.71 Total: 42.76 kcal Total: -86.53 6.91 -79.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265928102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.484 kcal (2) G-P(sol) polarization free energy of solvation -86.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds