Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35926 * 116.99637 * 2 1 4 4 C 1.38701 * 120.06257 * 0.02562 * 3 2 1 5 5 C 1.38148 * 119.95985 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.07839 * 359.97438 * 5 4 3 7 7 C 1.50691 * 119.94359 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.46998 * 90.00133 * 7 6 5 9 9 C 1.36940 * 120.00263 * 90.00470 * 8 7 6 10 10 H 1.07993 * 119.99850 * 218.11840 * 9 8 7 11 11 C 1.38810 * 119.99837 * 38.10669 * 9 8 7 12 12 N 1.31619 * 120.00344 * 20.48420 * 11 9 8 13 13 Si 1.86803 * 119.99806 * 200.48633 * 11 9 8 14 14 H 1.48498 * 109.47459 * 90.00382 * 13 11 9 15 15 H 1.48504 * 109.46728 * 210.00147 * 13 11 9 16 16 H 1.48497 * 109.46948 * 329.99872 * 13 11 9 17 17 C 1.46500 * 119.99915 * 269.99914 * 8 7 6 18 18 C 1.52999 * 117.49768 * 194.00626 * 17 8 7 19 19 C 1.52999 * 117.49816 * 125.34707 * 17 8 7 20 20 C 1.38246 * 120.11283 * 359.79365 * 6 5 4 21 21 C 1.38257 * 120.04682 * 0.46113 * 20 6 5 22 22 Cl 1.73596 * 120.03946 * 179.78942 * 21 20 6 23 23 H 1.09006 * 109.47099 * 60.00196 * 1 2 3 24 24 H 1.09004 * 109.46744 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47282 * 299.99904 * 1 2 3 26 26 H 1.08000 * 120.01970 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.96290 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47554 * 210.00186 * 7 6 5 29 29 H 1.09001 * 109.47447 * 330.00031 * 7 6 5 30 30 H 0.97001 * 120.00289 * 174.96262 * 12 11 9 31 31 H 1.08994 * 115.55084 * 339.67356 * 17 8 7 32 32 H 1.09004 * 117.49804 * 0.02562 * 18 17 8 33 33 H 1.09003 * 117.50310 * 145.01810 * 18 17 8 34 34 H 1.08998 * 117.49938 * 214.97358 * 19 17 8 35 35 H 1.09004 * 117.49697 * 359.97438 * 19 17 8 36 36 H 1.08001 * 119.97680 * 180.23267 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.2918 2.3752 0.0005 5 6 1.9211 3.6050 0.0011 6 6 3.3020 3.6769 0.0016 7 6 3.9853 5.0200 0.0028 8 7 4.2063 5.4542 1.3844 9 6 5.3666 5.1195 2.0301 10 1 5.3454 4.8580 3.0776 11 6 6.5699 5.1163 1.3380 12 7 6.6867 5.7974 0.2179 13 14 8.0234 4.1451 1.9965 14 1 7.9883 2.7666 1.4453 15 1 9.2877 4.8090 1.5890 16 1 7.9497 4.0877 3.4785 17 6 3.1860 6.2466 2.0752 18 6 3.5932 6.9443 3.3745 19 6 2.6730 5.7218 3.4177 20 6 4.0568 2.5187 0.0059 21 6 3.4322 1.2853 0.0001 22 17 4.3802 -0.1690 0.0000 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2132 2.3201 0.0005 27 1 1.3338 4.5114 0.0011 28 1 4.9435 4.9407 -0.5108 29 1 3.3571 5.7477 -0.5108 30 1 7.5467 5.8552 -0.2272 31 1 2.4733 6.7604 1.4301 32 1 4.6205 6.8141 3.7151 33 1 3.1482 7.9169 3.5845 34 1 1.6229 5.8907 3.6560 35 1 3.0944 4.7867 3.7867 36 1 5.1353 2.5774 0.0101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270735521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = 29.125276 kcal Electronic energy + Delta-G solvation = -19959.672235 eV Core-core repulsion = 16857.736878 eV Total energy + Delta-G solvation = -3101.935356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83480 -37.68812 -36.66745 -35.92033 -33.54335 -31.30775 -30.42553 -29.34248 -27.38627 -25.30282 -23.55556 -22.21215 -21.37616 -20.77611 -19.85544 -17.95189 -16.50477 -16.13269 -15.64046 -15.46007 -15.08841 -14.44227 -14.05321 -13.73020 -13.64106 -13.41881 -13.16974 -12.67127 -11.98557 -11.82892 -11.66873 -11.27116 -11.16854 -10.95211 -10.84398 -10.65047 -10.62390 -10.52984 -10.39334 -10.15165 -10.02362 -9.65757 -9.31641 -8.52466 -8.38598 -7.64485 -6.55278 -5.91369 -3.46707 1.63714 1.80784 2.61634 3.31900 3.40077 3.41318 3.42371 4.08286 4.39896 4.93440 4.99828 5.12330 5.15807 5.25283 5.30877 5.36962 5.45298 5.74056 5.84117 5.88481 5.91863 6.09214 6.16609 6.21967 6.47123 6.50995 6.53402 6.60264 6.79076 6.96815 7.13204 7.16377 7.19145 7.50847 7.58674 7.76483 8.43422 9.06985 9.68488 10.25573 11.09897 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.006959 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.714190 B = 4022.407924 C = 5226.203130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.111 3.889 4 C -0.202 4.202 5 C -0.075 4.075 6 C -0.092 4.092 7 C 0.180 3.820 8 N -0.541 5.541 9 C -0.258 4.258 10 H 0.062 0.938 11 C 0.019 3.981 12 N -0.885 5.885 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.129 3.871 18 C -0.195 4.195 19 C -0.226 4.226 20 C -0.052 4.052 21 C -0.066 4.066 22 Cl -0.077 7.077 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 -6.286 -1.779 12.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.226 6.226 3 C 0.065 3.935 4 C -0.221 4.221 5 C -0.094 4.094 6 C -0.096 4.096 7 C 0.054 3.946 8 N -0.256 5.256 9 C -0.388 4.388 10 H 0.080 0.920 11 C -0.182 4.182 12 N -0.527 5.527 13 Si 0.722 3.278 14 H -0.207 1.207 15 H -0.215 1.215 16 H -0.201 1.201 17 C 0.019 3.981 18 C -0.234 4.234 19 C -0.267 4.267 20 C -0.072 4.072 21 C -0.093 4.093 22 Cl -0.048 7.048 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.072 0.928 26 H 0.144 0.856 27 H 0.140 0.860 28 H 0.125 0.875 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.562 -6.603 -1.958 12.609 hybrid contribution 0.544 -0.533 0.577 0.956 sum -10.018 -7.136 -1.381 12.377 Atomic orbital electron populations 1.22983 0.78993 1.03412 1.01160 1.86108 1.20775 1.26559 1.89184 1.18521 0.90349 0.84694 0.99897 1.21033 0.99300 0.91950 1.09782 1.20927 0.94567 0.96428 0.97445 1.21147 0.93037 0.98188 0.97213 1.20033 1.00521 0.87020 0.87041 1.43321 1.15312 1.55918 1.11025 1.18929 0.83865 1.40701 0.95292 0.92037 1.25194 0.97445 0.98049 0.97496 1.69875 1.24192 1.39487 1.19116 0.86437 0.81910 0.80367 0.79067 1.20711 1.21526 1.20137 1.21105 0.94334 0.95951 0.86684 1.23080 1.00479 0.94568 1.05254 1.23354 0.97198 0.98270 1.07914 1.20927 1.00953 0.88932 0.96385 1.20223 0.88313 0.88324 1.12490 1.98320 1.72143 1.37060 1.97295 0.92904 0.88647 0.92847 0.85637 0.86043 0.87503 0.94189 0.93078 0.89478 0.88288 0.90832 0.91052 0.89793 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.74 9.96 -19.51 -0.19 -4.93 16 3 C 0.11 1.87 6.68 -39.20 -0.26 1.61 16 4 C -0.20 -3.09 9.04 -39.44 -0.36 -3.44 16 5 C -0.07 -1.25 9.69 -39.60 -0.38 -1.63 16 6 C -0.09 -1.81 5.46 -104.61 -0.57 -2.38 16 7 C 0.18 3.91 5.45 -5.20 -0.03 3.89 16 8 N -0.54 -12.62 2.76 -167.03 -0.46 -13.08 16 9 C -0.26 -6.65 8.04 -15.06 -0.12 -6.77 16 10 H 0.06 1.64 7.23 -52.49 -0.38 1.26 16 11 C 0.02 0.50 4.97 -17.43 -0.09 0.41 16 12 N -0.89 -23.95 11.45 55.49 0.64 -23.31 16 13 Si 0.89 20.97 29.60 -169.99 -5.03 15.94 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.13 2.64 6.61 -67.93 -0.45 2.19 16 18 C -0.19 -3.82 9.81 -26.69 -0.26 -4.08 16 19 C -0.23 -4.29 10.09 -26.69 -0.27 -4.55 16 20 C -0.05 -1.05 9.48 -39.57 -0.38 -1.43 16 21 C -0.07 -1.23 6.33 -39.36 -0.25 -1.48 16 22 Cl -0.08 -1.35 28.50 -51.86 -1.48 -2.83 16 23 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 27 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 28 H 0.11 2.63 5.46 -51.93 -0.28 2.35 16 29 H 0.04 0.81 7.98 -51.93 -0.41 0.39 16 30 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 31 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 32 H 0.10 2.16 6.96 -51.93 -0.36 1.80 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.74 8.00 -51.93 -0.42 1.33 16 36 H 0.14 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -27.69 319.29 -8.79 -36.49 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.65 Total: 3.30 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -2.42 Total: -16.38 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.17 Total: -36.39 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.19 Total: -4.93 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.48 Total: -2.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.69 -8.79 -36.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270735521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.611 kcal (2) G-P(sol) polarization free energy of solvation -27.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds