Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76192 * 103.00226 * 2 1 4 4 C 1.39457 * 120.42598 * 179.97438 * 3 2 1 5 5 C 1.38283 * 118.43082 * 179.75272 * 4 3 2 6 6 C 1.39026 * 119.18579 * 0.50840 * 5 4 3 7 7 N 1.39643 * 119.61511 * 179.75483 * 6 5 4 8 8 C 1.34776 * 120.00397 * 185.10652 * 7 6 5 9 9 O 1.21584 * 119.99782 * 354.89892 * 8 7 6 10 10 N 1.34770 * 119.99839 * 174.90330 * 8 7 6 11 11 C 1.46505 * 119.99602 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47552 * 34.99606 * 11 10 8 13 13 C 1.52998 * 109.47031 * 274.99490 * 11 10 8 14 14 C 1.50699 * 109.46809 * 154.99904 * 11 10 8 15 15 H 1.07992 * 120.00483 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99663 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00176 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99729 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47082 * 90.00526 * 18 16 14 20 20 H 1.48505 * 109.46881 * 210.00061 * 18 16 14 21 21 H 1.48496 * 109.47354 * 330.00053 * 18 16 14 22 22 N 1.32303 * 120.77825 * 359.47557 * 6 5 4 23 23 C 1.31923 * 121.70977 * 0.28091 * 22 6 5 24 24 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47024 * 299.99991 * 1 2 3 26 26 H 1.08996 * 109.46897 * 60.00279 * 1 2 3 27 27 H 1.07999 * 120.78361 * 359.97438 * 4 3 2 28 28 H 1.08007 * 120.40997 * 180.28550 * 5 4 3 29 29 H 0.97002 * 119.99444 * 5.10736 * 7 6 5 30 30 H 0.96996 * 120.00524 * 359.97438 * 10 8 7 31 31 H 1.09004 * 109.46997 * 59.99932 * 13 11 10 32 32 H 1.09004 * 109.47592 * 300.00321 * 13 11 10 33 33 H 1.09000 * 109.46910 * 180.02562 * 13 11 10 34 34 H 0.97000 * 120.00098 * 179.97438 * 17 16 14 35 35 H 1.08010 * 119.62727 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2105 1.7167 0.0000 4 6 3.5411 2.1343 0.0005 5 6 3.8051 3.4917 -0.0047 6 6 2.7431 4.3890 0.0004 7 7 2.9995 5.7617 0.0004 8 6 1.9809 6.6375 0.1092 9 8 0.8329 6.2372 0.1140 10 7 2.2350 7.9570 0.2126 11 6 1.1278 8.9090 0.3314 12 1 0.3228 8.4594 0.9127 13 6 0.6111 9.2671 -1.0634 14 6 1.6108 10.1573 1.0239 15 1 2.6394 10.2337 1.3439 16 6 0.7394 11.2018 1.2490 17 7 -0.5134 11.1086 0.8599 18 14 1.3379 12.7489 2.1080 19 1 1.8410 13.7133 1.0971 20 1 0.2150 13.3625 2.8616 21 1 2.4333 12.4008 3.0483 22 7 1.4924 3.9576 -0.0002 23 6 1.2027 2.6706 -0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.3463 1.4146 0.0014 28 1 4.8238 3.8505 -0.0091 29 1 3.9108 6.0848 -0.0780 30 1 3.1509 8.2764 0.2090 31 1 0.2618 8.3642 -1.5644 32 1 1.4161 9.7167 -1.6448 33 1 -0.2124 9.9757 -0.9750 34 1 -1.1265 11.8433 1.0185 35 1 0.1695 2.3558 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274836354.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = 20.568569 kcal Electronic energy + Delta-G solvation = -19028.281130 eV Core-core repulsion = 15960.311185 eV Total energy + Delta-G solvation = -3067.969946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55526 -38.83782 -35.23366 -34.22242 -32.55933 -32.30484 -30.55988 -29.14929 -28.31208 -25.25099 -23.94763 -23.47854 -21.28134 -19.82030 -18.34894 -17.95423 -17.59319 -16.19479 -15.70017 -15.23918 -15.07701 -14.85895 -14.57352 -14.12528 -13.92614 -13.51621 -13.49731 -13.18140 -12.87949 -12.38726 -12.13793 -11.79108 -11.18976 -11.08180 -10.88286 -10.87028 -10.64919 -10.30729 -10.23085 -9.95565 -9.75988 -9.04488 -8.91948 -8.79504 -8.55287 -7.91106 -7.30315 -6.12386 -4.21613 0.99802 1.25904 1.35138 2.20889 2.95324 3.24114 3.31170 3.33534 3.59855 4.13135 4.29598 4.40753 4.72023 4.81239 4.84462 4.84714 4.90745 5.15058 5.20484 5.42593 5.53830 5.72086 5.83660 6.20105 6.73967 6.84731 6.99149 7.04968 7.19062 7.48309 7.61114 7.75567 7.93183 8.15323 8.19747 8.73897 8.87843 9.29398 9.47637 10.93699 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.040759 B = 0.003147 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.802106 B = 8894.496452 C = 9243.603313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.118 6.118 3 C -0.189 4.189 4 C -0.025 4.025 5 C -0.201 4.201 6 C 0.390 3.610 7 N -0.675 5.675 8 C 0.681 3.319 9 O -0.537 6.537 10 N -0.721 5.721 11 C 0.282 3.718 12 H 0.049 0.951 13 C -0.148 4.148 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 N -0.454 5.454 23 C 0.132 3.868 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.409 0.591 30 H 0.384 0.616 31 H 0.015 0.985 32 H 0.025 0.975 33 H 0.090 0.910 34 H 0.265 0.735 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -18.553 -2.462 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.120 5.880 3 C -0.305 4.305 4 C -0.056 4.056 5 C -0.227 4.227 6 C 0.155 3.845 7 N -0.323 5.323 8 C 0.380 3.620 9 O -0.408 6.408 10 N -0.374 5.374 11 C 0.180 3.820 12 H 0.067 0.933 13 C -0.207 4.207 14 C -0.572 4.572 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 N -0.168 5.168 23 C -0.033 4.033 24 H 0.126 0.874 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.245 0.755 30 H 0.216 0.784 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.819 -19.003 -2.427 20.335 hybrid contribution 1.056 1.751 0.381 2.080 sum 7.875 -17.252 -2.047 19.075 Atomic orbital electron populations 1.23670 0.94520 1.07124 1.06065 1.85196 1.06749 1.02532 1.93495 1.22556 0.97757 0.97837 1.12330 1.20844 0.94607 0.94996 0.95129 1.21344 0.99214 0.92807 1.09322 1.18325 0.89439 0.84248 0.92497 1.43134 1.10901 1.02882 1.75421 1.16286 0.84564 0.81758 0.79393 1.90998 1.18325 1.77235 1.54259 1.45897 1.11592 1.03724 1.76151 1.18670 0.84133 0.85428 0.93785 0.93281 1.22106 1.01638 0.99587 0.97355 1.21208 0.97041 0.99961 1.39032 0.92079 1.24885 0.94756 0.98603 0.95471 1.69905 1.03742 1.32464 1.45895 0.86433 0.78377 0.82663 0.79513 1.20552 1.21054 1.19878 1.67760 1.19343 1.15701 1.13968 1.22795 0.98657 0.87031 0.94797 0.87389 0.89512 0.89542 0.84264 0.84213 0.75492 0.78357 0.96562 0.95549 0.89103 0.92540 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.16 101.05 0.93 -0.13 16 2 S -0.12 -1.15 22.58 -107.50 -2.43 -3.58 16 3 C -0.19 -2.29 6.13 -38.94 -0.24 -2.52 16 4 C -0.02 -0.27 9.93 -39.11 -0.39 -0.66 16 5 C -0.20 -2.32 9.93 -39.27 -0.39 -2.71 16 6 C 0.39 6.14 7.43 -154.51 -1.15 5.00 16 7 N -0.68 -10.61 5.40 -15.76 -0.09 -10.70 16 8 C 0.68 14.30 8.49 -86.92 -0.74 13.56 16 9 O -0.54 -13.67 14.27 5.29 0.08 -13.60 16 10 N -0.72 -15.14 5.07 -59.82 -0.30 -15.44 16 11 C 0.28 7.25 2.56 -69.08 -0.18 7.07 16 12 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 13 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 14 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -24.98 11.32 55.43 0.63 -24.35 16 18 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 N -0.45 -8.25 7.88 -12.15 -0.10 -8.34 16 23 C 0.13 1.91 10.53 -17.32 -0.18 1.72 16 24 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.09 0.63 7.76 -51.92 -0.40 0.22 16 26 H 0.09 0.61 7.76 -51.93 -0.40 0.21 16 27 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.41 4.58 8.72 -40.82 -0.36 4.23 16 30 H 0.38 6.76 8.56 -40.82 -0.35 6.41 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.15 1.92 5.89 -52.48 -0.31 1.61 16 LS Contribution 313.75 15.07 4.73 4.73 Total: -1.00 -33.67 313.75 -9.07 -42.74 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.18 Total: 7.78 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -2.39 Total: 5.16 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.14 Total: -58.83 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.60 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.43 Total: -3.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.67 -9.07 -42.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274836354.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.312 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds