Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76192 * 103.00226 * 2 1 4 4 C 1.39457 * 120.42598 * 179.97438 * 3 2 1 5 5 C 1.38283 * 118.43082 * 179.75272 * 4 3 2 6 6 C 1.39026 * 119.18579 * 0.50840 * 5 4 3 7 7 N 1.39643 * 119.61511 * 179.75483 * 6 5 4 8 8 C 1.34776 * 120.00397 * 185.10652 * 7 6 5 9 9 O 1.21584 * 119.99782 * 354.89892 * 8 7 6 10 10 N 1.34770 * 119.99839 * 174.90330 * 8 7 6 11 11 C 1.46505 * 119.99602 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47552 * 34.99606 * 11 10 8 13 13 C 1.52998 * 109.47031 * 274.99490 * 11 10 8 14 14 C 1.50699 * 109.46809 * 154.99904 * 11 10 8 15 15 H 1.07992 * 120.00483 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99663 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00176 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99729 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47082 * 90.00526 * 18 16 14 20 20 H 1.48505 * 109.46881 * 210.00061 * 18 16 14 21 21 H 1.48496 * 109.47354 * 330.00053 * 18 16 14 22 22 N 1.32303 * 120.77825 * 359.47557 * 6 5 4 23 23 C 1.31923 * 121.70977 * 0.28091 * 22 6 5 24 24 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47024 * 299.99991 * 1 2 3 26 26 H 1.08996 * 109.46897 * 60.00279 * 1 2 3 27 27 H 1.07999 * 120.78361 * 359.97438 * 4 3 2 28 28 H 1.08007 * 120.40997 * 180.28550 * 5 4 3 29 29 H 0.97002 * 119.99444 * 5.10736 * 7 6 5 30 30 H 0.96996 * 120.00524 * 359.97438 * 10 8 7 31 31 H 1.09004 * 109.46997 * 59.99932 * 13 11 10 32 32 H 1.09004 * 109.47592 * 300.00321 * 13 11 10 33 33 H 1.09000 * 109.46910 * 180.02562 * 13 11 10 34 34 H 0.97000 * 120.00098 * 179.97438 * 17 16 14 35 35 H 1.08010 * 119.62727 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2105 1.7167 0.0000 4 6 3.5411 2.1343 0.0005 5 6 3.8051 3.4917 -0.0047 6 6 2.7431 4.3890 0.0004 7 7 2.9995 5.7617 0.0004 8 6 1.9809 6.6375 0.1092 9 8 0.8329 6.2372 0.1140 10 7 2.2350 7.9570 0.2126 11 6 1.1278 8.9090 0.3314 12 1 0.3228 8.4594 0.9127 13 6 0.6111 9.2671 -1.0634 14 6 1.6108 10.1573 1.0239 15 1 2.6394 10.2337 1.3439 16 6 0.7394 11.2018 1.2490 17 7 -0.5134 11.1086 0.8599 18 14 1.3379 12.7489 2.1080 19 1 1.8410 13.7133 1.0971 20 1 0.2150 13.3625 2.8616 21 1 2.4333 12.4008 3.0483 22 7 1.4924 3.9576 -0.0002 23 6 1.2027 2.6706 -0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.3463 1.4146 0.0014 28 1 4.8238 3.8505 -0.0091 29 1 3.9108 6.0848 -0.0780 30 1 3.1509 8.2764 0.2090 31 1 0.2618 8.3642 -1.5644 32 1 1.4161 9.7167 -1.6448 33 1 -0.2124 9.9757 -0.9750 34 1 -1.1265 11.8433 1.0185 35 1 0.1695 2.3558 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274836354.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = -2.530824 kcal Electronic energy + Delta-G solvation = -19029.282795 eV Core-core repulsion = 15960.311185 eV Total energy + Delta-G solvation = -3068.971610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.78706 -40.28222 -36.95224 -35.79344 -34.32811 -33.46755 -31.80314 -30.42625 -29.49874 -27.33925 -25.11453 -24.59810 -22.93969 -21.53960 -19.92523 -19.18004 -18.50921 -17.94711 -17.00642 -16.95866 -16.51134 -15.97044 -15.65734 -15.41700 -15.18679 -15.00776 -14.44026 -14.33757 -14.23617 -13.74485 -13.69017 -13.00448 -12.94291 -12.91025 -12.71629 -12.30704 -12.14641 -12.09357 -11.72509 -11.28250 -11.10827 -11.03198 -10.60743 -10.04685 -10.03756 -9.66571 -8.21321 -8.17182 -6.34874 -0.04116 0.30598 0.56765 1.41531 1.45576 1.46835 1.56654 1.65540 2.19541 2.41894 2.86623 3.12941 3.20563 3.61621 3.84037 3.96828 4.08152 4.25472 4.30647 4.64120 4.67175 4.76711 4.87626 4.92694 4.94869 5.09552 5.20928 5.37320 5.58743 5.64952 5.73199 5.83330 6.07974 6.11619 6.73002 6.92576 7.32471 7.38551 7.75357 8.89520 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.040759 B = 0.003147 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.802106 B = 8894.496452 C = 9243.603313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.107 6.107 3 C -0.182 4.182 4 C -0.027 4.027 5 C -0.175 4.175 6 C 0.351 3.649 7 N -0.658 5.658 8 C 0.682 3.318 9 O -0.589 6.589 10 N -0.715 5.715 11 C 0.290 3.710 12 H -0.004 1.004 13 C -0.133 4.133 14 C -0.546 4.546 15 H 0.076 0.924 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.976 3.024 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.263 1.263 22 N -0.510 5.510 23 C 0.106 3.894 24 H 0.132 0.868 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.176 0.824 28 H 0.182 0.818 29 H 0.431 0.569 30 H 0.404 0.596 31 H 0.007 0.993 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.266 0.734 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.026 -19.607 -2.254 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.132 5.868 3 C -0.298 4.298 4 C -0.057 4.057 5 C -0.199 4.199 6 C 0.117 3.883 7 N -0.309 5.309 8 C 0.381 3.619 9 O -0.465 6.465 10 N -0.369 5.369 11 C 0.187 3.813 12 H 0.014 0.986 13 C -0.192 4.192 14 C -0.584 4.584 15 H 0.094 0.906 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.800 3.200 19 H -0.195 1.195 20 H -0.213 1.213 21 H -0.187 1.187 22 N -0.224 5.224 23 C -0.058 4.058 24 H 0.150 0.850 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.193 0.807 28 H 0.200 0.800 29 H 0.271 0.729 30 H 0.239 0.761 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.752 -20.126 -2.231 22.476 hybrid contribution 0.141 1.841 0.301 1.871 sum 9.893 -18.285 -1.929 20.879 Atomic orbital electron populations 1.23797 0.92793 1.08690 1.06169 1.85154 1.08728 1.00049 1.92861 1.22852 0.98048 0.99019 1.09903 1.21357 0.94954 0.95471 0.93961 1.21708 0.99849 0.92272 1.06116 1.18679 0.90122 0.84293 0.95206 1.42662 1.10622 1.02587 1.75040 1.16411 0.84867 0.81951 0.78678 1.90962 1.20991 1.78150 1.56397 1.45460 1.11436 1.03536 1.76469 1.18222 0.84204 0.85875 0.93041 0.98623 1.21918 1.01268 0.98603 0.97446 1.21536 0.97768 1.00058 1.39068 0.90594 1.25832 0.94758 1.02029 0.96068 1.70064 1.05084 1.33511 1.47015 0.85292 0.77834 0.78390 0.78478 1.19522 1.21343 1.18735 1.67531 1.21621 1.17849 1.15428 1.22898 0.99734 0.86579 0.96555 0.85002 0.89541 0.89427 0.80690 0.80042 0.72881 0.76129 0.97340 0.93932 0.91400 0.92525 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.16 113.37 1.04 -0.88 16 2 S -0.11 -1.86 22.58 -56.49 -1.28 -3.13 16 3 C -0.18 -4.14 6.13 22.69 0.14 -4.00 16 4 C -0.03 -0.50 9.93 22.57 0.22 -0.27 16 5 C -0.17 -3.52 9.93 22.47 0.22 -3.29 16 6 C 0.35 10.86 7.43 132.85 0.99 11.84 16 7 N -0.66 -20.33 5.40 -322.05 -1.74 -22.07 16 8 C 0.68 29.35 8.49 179.06 1.52 30.87 16 9 O -0.59 -31.68 14.27 -3.98 -0.06 -31.74 16 10 N -0.71 -30.36 5.07 -461.42 -2.34 -32.70 16 11 C 0.29 15.43 2.56 44.24 0.11 15.54 16 12 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 13 C -0.13 -6.96 9.26 71.98 0.67 -6.30 16 14 C -0.55 -29.05 8.73 25.60 0.22 -28.82 16 15 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 16 C 0.01 0.71 5.30 84.66 0.45 1.16 16 17 N -0.92 -53.30 11.32 21.45 0.24 -53.06 16 18 Si 0.98 42.01 29.54 68.60 2.03 44.03 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 N -0.51 -19.08 7.88 -192.35 -1.52 -20.60 16 23 C 0.11 3.11 10.53 84.80 0.89 4.00 16 24 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.09 1.18 7.76 -2.39 -0.02 1.16 16 26 H 0.09 1.17 7.76 -2.39 -0.02 1.15 16 27 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.43 8.82 8.72 -92.71 -0.81 8.02 16 30 H 0.40 13.81 8.56 -92.71 -0.79 13.01 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.16 4.14 5.89 -2.91 -0.02 4.12 16 Total: -1.00 -77.03 313.75 1.35 -75.68 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -0.47 Total: 23.73 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 6.48 Total: 19.85 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -5.35 Total: -128.42 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.06 Total: -31.74 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: -1.86 SS G_CDS: -1.28 Total: -3.13 kcal Total: -77.03 1.35 -75.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274836354.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.151 kcal (2) G-P(sol) polarization free energy of solvation -77.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds