Wall clock time and date at job start Tue Mar 31 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35895 * 117.00079 * 2 1 4 4 C 1.38735 * 120.04994 * 0.02562 * 3 2 1 5 5 C 1.38237 * 119.93439 * 179.97438 * 4 3 2 6 6 Cl 1.73598 * 119.98529 * 180.02562 * 5 4 3 7 7 C 1.38409 * 120.02531 * 359.97438 * 5 4 3 8 8 C 1.38220 * 120.10119 * 0.27777 * 7 5 4 9 9 C 1.38177 * 120.06856 * 359.49027 * 8 7 5 10 10 C 1.50698 * 120.01588 * 180.27740 * 9 8 7 11 11 N 1.46497 * 109.47230 * 260.20899 * 10 9 8 12 12 C 1.36941 * 120.00044 * 89.99850 * 11 10 9 13 13 H 1.07995 * 120.00060 * 304.47610 * 12 11 10 14 14 C 1.38813 * 119.99859 * 124.48046 * 12 11 10 15 15 N 1.31620 * 120.00045 * 164.77877 * 14 12 11 16 16 Si 1.86801 * 119.99955 * 344.77959 * 14 12 11 17 17 H 1.48501 * 109.47008 * 92.00868 * 16 14 12 18 18 H 1.48499 * 109.47047 * 212.01032 * 16 14 12 19 19 H 1.48499 * 109.47013 * 332.01151 * 16 14 12 20 20 C 1.46502 * 119.99914 * 270.00482 * 11 10 9 21 21 C 1.53003 * 117.49840 * 183.13188 * 20 11 10 22 22 C 1.52996 * 117.50206 * 114.46791 * 20 11 10 23 23 H 1.09000 * 109.47378 * 299.99732 * 1 2 3 24 24 H 1.08998 * 109.47165 * 60.00327 * 1 2 3 25 25 H 1.08999 * 109.47206 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.03172 * 359.96020 * 4 3 2 27 27 H 1.08006 * 119.94472 * 180.02562 * 7 5 4 28 28 H 1.08001 * 119.96584 * 179.71796 * 8 7 5 29 29 H 1.09003 * 109.46995 * 20.20458 * 10 9 8 30 30 H 1.08993 * 109.46929 * 140.20889 * 10 9 8 31 31 H 0.96998 * 119.99929 * 179.97438 * 15 14 12 32 32 H 1.09003 * 115.54515 * 328.79791 * 20 11 10 33 33 H 1.08999 * 117.49783 * 359.97438 * 21 20 11 34 34 H 1.09004 * 117.49836 * 145.01834 * 21 20 11 35 35 H 1.09005 * 117.50049 * 214.97251 * 22 20 11 36 36 H 1.08999 * 117.49730 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3750 0.0005 5 6 1.9215 3.6055 0.0011 6 17 0.9786 5.0630 0.0024 7 6 3.3038 3.6757 0.0016 8 6 4.0568 2.5166 -0.0042 9 6 3.4312 1.2846 0.0001 10 6 4.2534 0.0217 0.0001 11 7 4.3189 -0.5184 -1.3601 12 6 5.3283 -0.1336 -2.2017 13 1 5.4903 0.9142 -2.4070 14 6 6.1431 -1.0904 -2.7912 15 7 6.9052 -0.7660 -3.8141 16 14 6.1581 -2.8384 -2.1325 17 1 5.1605 -3.6540 -2.8707 18 1 7.5101 -3.4248 -2.3158 19 1 5.8156 -2.8259 -0.6877 20 6 3.3044 -1.4701 -1.8200 21 6 3.4687 -2.0539 -3.2247 22 6 2.3737 -1.0205 -2.9481 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2127 2.3201 0.0003 27 1 3.7947 4.6377 0.0024 28 1 5.1352 2.5740 -0.0084 29 1 5.2609 0.2441 0.3516 30 1 3.7918 -0.7123 0.6606 31 1 7.4749 -1.4345 -4.2257 32 1 2.8859 -2.1193 -1.0509 33 1 4.3313 -1.7295 -3.8068 34 1 3.1578 -3.0871 -3.3799 35 1 1.3431 -1.3743 -2.9214 36 1 2.5159 -0.0164 -3.3478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280553430.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:05 Heat of formation + Delta-G solvation = 36.377292 kcal Electronic energy + Delta-G solvation = -20419.462162 eV Core-core repulsion = 17317.841277 eV Total energy + Delta-G solvation = -3101.620885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.98702 -37.40747 -37.14758 -36.12953 -33.28610 -32.05123 -30.16723 -29.80859 -27.19963 -25.68647 -23.39871 -22.02758 -21.48609 -21.14952 -19.65481 -17.91000 -16.76153 -16.12774 -15.66045 -15.55037 -14.99045 -14.57779 -14.44239 -13.76256 -13.61478 -13.33614 -13.09493 -12.85526 -12.05673 -12.02232 -11.94454 -11.57704 -11.50123 -11.10325 -10.82033 -10.72867 -10.67727 -10.53454 -10.35241 -10.28704 -9.76653 -9.40484 -9.06137 -8.57735 -8.37703 -7.82489 -6.42309 -5.99976 -3.69657 1.45395 1.65752 2.25661 3.41515 3.49825 3.52296 3.57993 3.93198 4.54775 4.97853 4.99457 5.05915 5.09805 5.25045 5.26307 5.33288 5.41444 5.54628 5.61481 5.90901 5.97271 6.01034 6.10150 6.20715 6.25221 6.38945 6.53723 6.58266 6.65785 6.70293 6.86060 7.04750 7.10789 7.37328 7.63317 8.11562 8.53733 9.03764 9.65441 10.16725 11.09379 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.005884 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.152332 B = 4757.370228 C = 5349.533554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.295 6.295 3 C 0.152 3.848 4 C -0.209 4.209 5 C -0.007 4.007 6 Cl -0.087 7.087 7 C -0.150 4.150 8 C -0.058 4.058 9 C -0.102 4.102 10 C 0.189 3.811 11 N -0.564 5.564 12 C -0.283 4.283 13 H 0.069 0.931 14 C 0.058 3.942 15 N -0.898 5.898 16 Si 0.885 3.115 17 H -0.270 1.270 18 H -0.306 1.306 19 H -0.270 1.270 20 C 0.126 3.874 21 C -0.205 4.205 22 C -0.206 4.206 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.138 0.862 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.740 4.179 8.963 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.207 6.207 3 C 0.105 3.895 4 C -0.229 4.229 5 C -0.034 4.034 6 Cl -0.058 7.058 7 C -0.169 4.169 8 C -0.077 4.077 9 C -0.106 4.106 10 C 0.063 3.937 11 N -0.283 5.283 12 C -0.412 4.412 13 H 0.087 0.913 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.713 3.287 17 H -0.196 1.196 18 H -0.234 1.234 19 H -0.194 1.194 20 C 0.018 3.982 21 C -0.242 4.242 22 C -0.246 4.246 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.156 0.844 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.569 4.038 8.847 15.114 hybrid contribution -0.458 -0.519 -0.062 0.695 sum -12.027 3.519 8.785 15.304 Atomic orbital electron populations 1.22998 0.79429 1.03564 1.00816 1.86203 1.20282 1.26030 1.88176 1.18659 0.91732 0.83526 0.95533 1.20928 1.00028 0.90882 1.11058 1.20470 0.91643 0.86329 1.04977 1.98334 1.73261 1.37110 1.97095 1.20894 0.91349 0.99461 1.05230 1.20912 1.00276 0.90222 0.96269 1.20553 0.91044 0.98458 1.00495 1.19824 0.96708 0.89659 0.87475 1.43512 1.26094 1.49557 1.09098 1.18531 1.06539 0.93394 1.22700 0.91336 1.25848 0.94343 0.98705 0.95590 1.69869 1.27597 1.35009 1.21209 0.86790 0.75826 0.85501 0.80541 1.19607 1.23362 1.19448 1.21176 0.93203 0.95023 0.88772 1.23552 1.02472 0.96272 1.01945 1.23220 0.93577 0.99258 1.08553 0.93233 0.92897 0.88549 0.85260 0.85480 0.84411 0.91410 0.93043 0.92575 0.89556 0.86379 0.90947 0.91547 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.29 -4.58 8.62 -19.41 -0.17 -4.74 16 3 C 0.15 2.51 6.66 -39.22 -0.26 2.25 16 4 C -0.21 -3.11 8.82 -39.40 -0.35 -3.46 16 5 C -0.01 -0.11 6.32 -39.52 -0.25 -0.36 16 6 Cl -0.09 -1.13 28.95 -51.86 -1.50 -2.63 16 7 C -0.15 -2.26 9.83 -39.53 -0.39 -2.65 16 8 C -0.06 -0.95 9.66 -39.61 -0.38 -1.34 16 9 C -0.10 -1.82 5.48 -104.47 -0.57 -2.39 16 10 C 0.19 3.72 5.51 -5.20 -0.03 3.69 16 11 N -0.56 -12.99 2.03 -167.03 -0.34 -13.33 16 12 C -0.28 -7.59 9.17 -15.06 -0.14 -7.73 16 13 H 0.07 2.04 8.06 -52.49 -0.42 1.62 16 14 C 0.06 1.60 3.74 -17.43 -0.07 1.53 16 15 N -0.90 -26.47 13.97 55.49 0.78 -25.70 16 16 Si 0.89 21.83 24.86 -169.99 -4.23 17.61 16 17 H -0.27 -6.42 5.79 56.52 0.33 -6.09 16 18 H -0.31 -7.72 7.11 56.52 0.40 -7.32 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.13 2.71 4.05 -67.93 -0.28 2.43 16 21 C -0.20 -4.55 6.68 -26.69 -0.18 -4.73 16 22 C -0.21 -4.20 10.36 -26.69 -0.28 -4.48 16 23 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 24 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 25 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.13 1.65 6.30 -52.48 -0.33 1.32 16 27 H 0.13 1.66 8.06 -52.48 -0.42 1.23 16 28 H 0.14 2.16 8.04 -52.49 -0.42 1.73 16 29 H 0.07 1.32 7.90 -51.93 -0.41 0.91 16 30 H 0.05 0.96 7.78 -51.93 -0.40 0.55 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.12 3.04 5.07 -51.93 -0.26 2.78 16 34 H 0.07 1.48 7.85 -51.93 -0.41 1.07 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -29.37 309.80 -7.74 -37.11 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.78 Total: 2.95 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -2.17 Total: -15.94 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.44 Total: -39.02 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.17 Total: -4.74 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.23 Total: 17.61 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.37 -7.74 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280553430.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.487 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds