Wall clock time and date at job start Tue Mar 31 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46490 * 109.47154 * 2 1 4 4 C 1.36882 * 119.99979 * 264.29054 * 3 2 1 5 5 H 1.07996 * 119.99913 * 146.04753 * 4 3 2 6 6 C 1.39040 * 120.00060 * 326.04833 * 4 3 2 7 7 N 1.31361 * 120.00131 * 156.32980 * 6 4 3 8 8 Si 1.86802 * 119.99933 * 336.32837 * 6 4 3 9 9 H 1.48504 * 109.46990 * 95.21177 * 8 6 4 10 10 H 1.48497 * 109.47291 * 215.21060 * 8 6 4 11 11 H 1.48497 * 109.47257 * 335.21379 * 8 6 4 12 12 C 1.34773 * 120.00214 * 84.29445 * 3 2 1 13 13 O 1.21600 * 120.00241 * 185.06024 * 12 3 2 14 14 C 1.47673 * 120.00045 * 5.06510 * 12 3 2 15 15 C 1.39703 * 120.13444 * 54.96726 * 14 12 3 16 16 C 1.37850 * 119.85661 * 179.97438 * 15 14 12 17 17 C 1.50705 * 119.92952 * 179.97438 * 16 15 14 18 18 C 1.38545 * 120.14134 * 0.24620 * 16 15 14 19 19 Cl 1.73605 * 119.86394 * 179.74613 * 18 16 15 20 20 C 1.38506 * 120.27541 * 359.49284 * 18 16 15 21 21 C 1.37891 * 120.13715 * 0.51194 * 20 18 16 22 22 C 1.50699 * 120.07263 * 179.72244 * 21 20 18 23 23 H 1.08994 * 109.47503 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47173 * 300.00676 * 1 2 3 25 25 H 1.08999 * 109.46534 * 59.99707 * 1 2 3 26 26 H 1.08996 * 109.46785 * 239.99413 * 2 1 3 27 27 H 1.08999 * 109.46534 * 120.00293 * 2 1 3 28 28 H 0.96998 * 120.00218 * 179.97438 * 7 6 4 29 29 H 1.08004 * 120.06982 * 359.97438 * 15 14 12 30 30 H 1.09000 * 109.46775 * 89.99816 * 17 16 15 31 31 H 1.08995 * 109.47383 * 209.99777 * 17 16 15 32 32 H 1.09000 * 109.47119 * 329.99806 * 17 16 15 33 33 H 1.08003 * 119.92845 * 180.27501 * 20 18 16 34 34 H 1.08999 * 109.47321 * 269.61507 * 22 21 20 35 35 H 1.09002 * 109.47040 * 29.61256 * 22 21 20 36 36 H 1.09004 * 109.47713 * 149.61254 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3577 1.9871 -1.1796 5 1 2.1891 3.0457 -1.3108 6 6 2.9194 1.2397 -2.2087 7 7 2.8229 1.6557 -3.4509 8 14 3.8114 -0.3561 -1.8248 9 1 2.8762 -1.4978 -1.9892 10 1 4.9584 -0.5180 -2.7539 11 1 4.3086 -0.3211 -0.4259 12 6 2.1336 2.0552 1.1614 13 8 2.4504 3.2291 1.1542 14 6 1.8752 1.3680 2.4427 15 6 2.5678 0.1978 2.7631 16 6 2.3225 -0.4387 3.9610 17 6 3.0682 -1.7015 4.3080 18 6 1.3878 0.0769 4.8441 19 17 1.0797 -0.7341 6.3478 20 6 0.7018 1.2397 4.5346 21 6 0.9381 1.8857 3.3395 22 6 0.1864 3.1473 3.0015 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.2151 1.1345 -4.1688 29 1 3.2938 -0.2073 2.0737 30 1 3.9853 -1.4474 4.8394 31 1 2.4431 -2.3300 4.9422 32 1 3.3155 -2.2404 3.3934 33 1 -0.0225 1.6392 5.2291 34 1 -0.7284 2.8929 2.4661 35 1 -0.0657 3.6772 3.9201 36 1 0.8094 3.7845 2.3738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280698134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:09 Heat of formation + Delta-G solvation = -10.742750 kcal Electronic energy + Delta-G solvation = -20369.265916 eV Core-core repulsion = 17265.601752 eV Total energy + Delta-G solvation = -3103.664164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08919 -38.15446 -36.41330 -35.37611 -33.61140 -32.43274 -30.73287 -29.81402 -29.17820 -25.61165 -24.68326 -23.42972 -22.63673 -21.28705 -18.86050 -17.02092 -16.50022 -16.13280 -15.89130 -15.76048 -14.41093 -14.20885 -14.04478 -13.67020 -13.26807 -13.13516 -12.97955 -12.82372 -12.50221 -12.38375 -12.27631 -12.20133 -11.85765 -11.70144 -11.48119 -11.35958 -11.11517 -10.82513 -10.78500 -10.64266 -10.14155 -9.88042 -9.18098 -8.73855 -8.58341 -8.29830 -7.85425 -6.49504 -4.00512 1.08073 1.34778 2.11803 2.95360 3.14027 3.17376 3.38668 3.86315 4.06038 4.31053 4.75329 4.77705 4.87991 5.18128 5.19704 5.38736 5.51359 5.54768 5.58040 5.59314 5.79144 5.84846 5.89881 5.93753 5.97062 6.06759 6.18888 6.25550 6.36493 6.39304 6.45106 6.71233 6.73788 6.88290 7.45186 8.18870 8.41386 8.86109 9.23412 9.66960 10.62083 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022864 B = 0.006083 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.350267 B = 4602.187090 C = 5259.391784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.076 3.924 3 N -0.448 5.448 4 C -0.318 4.318 5 H 0.110 0.890 6 C 0.062 3.938 7 N -0.854 5.854 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.264 1.264 12 C 0.499 3.501 13 O -0.557 6.557 14 C -0.086 4.086 15 C -0.085 4.085 16 C -0.089 4.089 17 C -0.116 4.116 18 C -0.029 4.029 19 Cl -0.078 7.078 20 C -0.113 4.113 21 C -0.040 4.040 22 C -0.129 4.129 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.275 0.725 29 H 0.135 0.865 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 -7.910 14.390 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.047 4.047 3 N -0.168 5.168 4 C -0.445 4.445 5 H 0.128 0.872 6 C -0.144 4.144 7 N -0.490 5.490 8 Si 0.700 3.300 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.188 1.188 12 C 0.287 3.713 13 O -0.440 6.440 14 C -0.090 4.090 15 C -0.103 4.103 16 C -0.089 4.089 17 C -0.173 4.173 18 C -0.056 4.056 19 Cl -0.049 7.049 20 C -0.132 4.132 21 C -0.041 4.041 22 C -0.186 4.186 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.153 0.847 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.151 0.849 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.852 -7.410 14.257 16.523 hybrid contribution 0.473 -1.094 0.145 1.200 sum -3.379 -8.504 14.402 17.063 Atomic orbital electron populations 1.22075 0.95986 1.01070 1.02616 1.22040 0.95158 0.85661 1.01881 1.43670 1.55743 1.11499 1.05898 1.19067 1.40579 0.97023 0.87837 0.87240 1.25319 0.96312 0.98176 0.94629 1.69749 1.40660 1.39798 0.98795 0.87055 0.80144 0.83340 0.79465 1.20050 1.21221 1.18814 1.17939 0.83078 0.87575 0.82685 1.90634 1.51439 1.15575 1.86361 1.20345 0.96783 0.95044 0.96813 1.21144 0.99465 0.94013 0.95706 1.19586 0.97336 0.98273 0.93743 1.20842 0.99963 0.93987 1.02500 1.20808 1.00309 0.95900 0.88541 1.98332 1.95148 1.79180 1.32224 1.20797 1.00662 0.94395 0.97336 1.19880 0.95312 0.96607 0.92345 1.21020 1.00325 0.94582 1.02637 0.92639 0.93006 0.91439 0.90770 0.91349 0.91419 0.84725 0.90810 0.90919 0.91119 0.84898 0.91104 0.91677 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.19 37.16 0.38 -2.40 16 2 C 0.08 1.52 4.51 -4.04 -0.02 1.50 16 3 N -0.45 -10.71 2.25 -115.95 -0.26 -10.97 16 4 C -0.32 -8.80 9.45 -15.00 -0.14 -8.94 16 5 H 0.11 3.41 7.79 -52.49 -0.41 3.00 16 6 C 0.06 1.68 5.27 -17.46 -0.09 1.59 16 7 N -0.85 -24.04 13.95 55.50 0.77 -23.27 16 8 Si 0.87 19.87 24.98 -169.99 -4.25 15.62 16 9 H -0.27 -5.79 6.64 56.52 0.38 -5.42 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 12 C 0.50 11.61 6.43 -12.41 -0.08 11.53 16 13 O -0.56 -14.85 14.94 5.28 0.08 -14.77 16 14 C -0.09 -1.62 4.77 -104.97 -0.50 -2.12 16 15 C -0.08 -1.40 7.26 -39.18 -0.28 -1.68 16 16 C -0.09 -1.25 5.88 -104.65 -0.61 -1.86 16 17 C -0.12 -1.29 9.61 36.01 0.35 -0.95 16 18 C -0.03 -0.39 6.32 -39.37 -0.25 -0.64 16 19 Cl -0.08 -0.90 27.27 -51.86 -1.41 -2.31 16 20 C -0.11 -1.58 9.46 -39.61 -0.37 -1.95 16 21 C -0.04 -0.66 5.91 -104.22 -0.62 -1.28 16 22 C -0.13 -2.00 9.61 36.01 0.35 -1.66 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.87 7.94 -51.93 -0.41 0.46 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 1.57 3.17 -51.93 -0.16 1.40 16 27 H 0.07 1.22 4.51 -51.93 -0.23 0.98 16 28 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.14 2.23 7.32 -52.48 -0.38 1.85 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.74 6.88 -51.93 -0.36 0.38 16 32 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 36 H 0.10 1.85 5.74 -51.93 -0.30 1.55 16 LS Contribution 307.37 15.07 4.63 4.63 Total: -1.00 -29.83 307.37 -6.71 -36.54 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.37 Total: 3.39 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.90 Total: -8.86 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.51 Total: -34.23 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.08 Total: -14.77 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.25 Total: 15.62 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.41 Total: -2.31 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.83 -6.71 -36.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280698134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.799 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds