Wall clock time and date at job start Tue Mar 31 2020 05:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46893 * 212.90065 * 3 2 1 5 5 C 1.36934 * 120.00002 * 263.91257 * 4 3 2 6 6 H 1.07998 * 120.00362 * 199.36436 * 5 4 3 7 7 C 1.38814 * 120.00245 * 19.36845 * 5 4 3 8 8 N 1.31623 * 119.99640 * 22.29839 * 7 5 4 9 9 Si 1.86798 * 120.00203 * 202.30190 * 7 5 4 10 10 H 1.48502 * 109.47013 * 59.99967 * 9 7 5 11 11 H 1.48504 * 109.46651 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47184 * 299.99825 * 9 7 5 13 13 C 1.46499 * 119.99954 * 83.91580 * 4 3 2 14 14 C 1.50701 * 109.47339 * 89.99939 * 13 4 3 15 15 C 1.38269 * 119.94426 * 89.99697 * 14 13 4 16 16 C 1.38143 * 120.05328 * 180.02562 * 15 14 13 17 17 C 1.38731 * 119.94724 * 359.97438 * 16 15 14 18 18 O 1.35895 * 120.05608 * 180.02562 * 17 16 15 19 19 C 1.42900 * 116.99911 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.47142 * 300.00043 * 19 18 17 21 21 F 1.39891 * 109.47121 * 60.00275 * 19 18 17 22 22 C 1.38731 * 119.88900 * 0.27527 * 17 16 15 23 23 C 1.38146 * 119.93984 * 359.47134 * 22 17 16 24 24 H 4.40637 * 5.51569 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.47043 * 92.90343 * 3 2 1 26 26 H 1.09000 * 109.46696 * 332.89729 * 3 2 1 27 27 H 0.97003 * 119.99849 * 180.02562 * 8 7 5 28 28 H 1.08994 * 109.47362 * 329.99812 * 13 4 3 29 29 H 1.09000 * 109.47240 * 209.99778 * 13 4 3 30 30 H 1.07995 * 119.97055 * 0.02562 * 15 14 13 31 31 H 1.08001 * 120.02463 * 179.97438 * 16 15 14 32 32 H 1.09009 * 109.47349 * 180.02562 * 19 18 17 33 33 H 1.07991 * 120.03122 * 179.72083 * 22 17 16 34 34 H 1.08005 * 119.97112 * 180.22835 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1606 0.7503 5 6 3.4800 2.3080 0.0881 6 1 4.1178 3.0364 0.5668 7 6 3.0113 2.5353 -1.1986 8 7 1.9271 1.9207 -1.6221 9 14 3.9192 3.7130 -2.3291 10 1 5.3088 3.2308 -2.5334 11 1 3.2212 3.7795 -3.6382 12 1 3.9496 5.0645 -1.7146 13 6 3.2512 1.0928 2.2090 14 6 4.6237 0.5930 2.5799 15 6 5.6574 1.4915 2.7694 16 6 6.9166 1.0357 3.1089 17 6 7.1433 -0.3245 3.2602 18 8 8.3809 -0.7752 3.5947 19 6 8.5410 -2.1884 3.7340 20 9 7.6862 -2.6579 4.7370 21 9 8.2274 -2.8148 2.5231 22 6 6.1056 -1.2243 3.0644 23 6 4.8470 -0.7632 2.7301 24 1 -1.0502 -0.0001 -0.0003 25 1 3.0093 0.0529 -1.0263 26 1 3.0097 -0.9140 0.4682 27 1 1.5997 2.0792 -2.5214 28 1 2.4975 0.4110 2.6029 29 1 3.0995 2.0858 2.6322 30 1 5.4803 2.5503 2.6519 31 1 7.7238 1.7379 3.2565 32 1 9.5734 -2.4125 4.0027 33 1 6.2806 -2.2840 3.1771 34 1 4.0380 -1.4630 2.5812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281287953.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:27 Heat of formation + Delta-G solvation = -35.271867 kcal Electronic energy + Delta-G solvation = -21459.997593 eV Core-core repulsion = 17803.473086 eV Total energy + Delta-G solvation = -3656.524506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.42689 -47.42205 -39.76444 -37.64613 -35.71080 -31.89063 -31.55279 -30.70512 -29.65666 -26.74985 -26.04753 -25.00330 -22.60080 -22.10602 -20.57354 -18.91789 -18.15469 -17.98465 -17.37475 -16.41986 -15.97643 -15.23694 -14.99626 -14.67065 -14.57023 -13.98059 -13.75514 -13.71890 -13.66363 -13.48249 -13.17423 -13.02724 -12.72979 -12.33334 -11.79566 -11.45028 -11.20009 -11.07017 -10.94601 -10.75645 -10.45419 -10.27294 -9.99704 -8.95068 -8.77692 -8.65737 -8.44477 -7.93838 -6.98849 -5.78406 -3.21423 1.67412 1.69677 2.57520 3.38023 3.38482 3.45119 3.46515 3.98702 4.18843 4.26898 4.39065 4.54198 4.56398 5.04645 5.12385 5.31804 5.49109 5.58220 5.71595 5.79184 5.85889 5.86910 6.12525 6.41296 6.47509 6.59916 6.63267 6.76298 6.88008 7.16233 7.20216 7.38838 7.42312 7.75451 8.28368 9.09546 9.20225 9.76430 10.23162 11.24741 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.004696 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.895415 B = 5961.182130 C = 6596.751991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.097 4.097 3 C 0.269 3.731 4 N -0.578 5.578 5 C -0.266 4.266 6 H 0.074 0.926 7 C 0.006 3.994 8 N -0.886 5.886 9 Si 0.898 3.102 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.181 3.819 14 C -0.096 4.096 15 C -0.070 4.070 16 C -0.135 4.135 17 C 0.081 3.919 18 O -0.325 6.325 19 C 0.412 3.588 20 F -0.202 7.202 21 F -0.200 7.200 22 C -0.190 4.190 23 C -0.079 4.079 24 H 0.190 0.810 25 H 0.091 0.909 26 H 0.036 0.964 27 H 0.255 0.745 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.176 0.824 33 H 0.125 0.875 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.019 -7.594 10.804 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.099 4.099 3 C 0.144 3.856 4 N -0.297 5.297 5 C -0.395 4.395 6 H 0.091 0.909 7 C -0.193 4.193 8 N -0.528 5.528 9 Si 0.727 3.273 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.054 3.946 14 C -0.099 4.099 15 C -0.089 4.089 16 C -0.154 4.154 17 C 0.039 3.961 18 O -0.243 6.243 19 C 0.321 3.679 20 F -0.184 7.184 21 F -0.181 7.181 22 C -0.209 4.209 23 C -0.098 4.098 24 H 0.207 0.793 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.193 0.807 33 H 0.143 0.857 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.067 -7.465 10.639 17.071 hybrid contribution -0.009 0.405 -0.890 0.978 sum 11.058 -7.060 9.749 16.346 Atomic orbital electron populations 1.24180 0.95325 1.06186 1.06146 1.24269 0.95279 0.95005 0.95390 1.17704 0.82830 0.87371 0.97734 1.43959 1.74555 1.11677 0.99491 1.19096 1.24647 0.98338 0.97428 0.90868 1.24912 0.96059 0.99069 0.99282 1.70130 1.19288 1.45513 1.17892 0.86445 0.79698 0.80743 0.80396 1.21028 1.21728 1.20940 1.19779 0.89593 0.99341 0.85886 1.21119 0.99414 0.93004 0.96392 1.20909 0.91116 1.00192 0.96653 1.20371 0.98214 0.91775 1.05044 1.18755 0.82596 0.93930 1.00813 1.86553 1.31022 1.21789 1.84979 1.23255 0.94062 0.77147 0.73418 1.93088 1.74961 1.88609 1.61701 1.93101 1.94732 1.82840 1.47462 1.21386 0.93985 0.98931 1.06577 1.20852 0.95751 0.95535 0.97644 0.79263 0.89062 0.94586 0.93477 0.93325 0.92153 0.85184 0.85606 0.80750 0.85741 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.84 19.25 29.55 0.57 -6.27 16 2 C -0.10 -2.35 11.50 -37.12 -0.43 -2.78 16 3 C 0.27 6.37 5.41 -6.83 -0.04 6.33 16 4 N -0.58 -13.83 2.47 -177.95 -0.44 -14.26 16 5 C -0.27 -6.99 9.63 -15.06 -0.15 -7.14 16 6 H 0.07 1.87 7.92 -52.49 -0.42 1.45 16 7 C 0.01 0.17 4.82 -17.43 -0.08 0.09 16 8 N -0.89 -25.07 9.61 55.49 0.53 -24.54 16 9 Si 0.90 21.41 29.61 -169.99 -5.03 16.38 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 C 0.18 3.60 5.80 -5.19 -0.03 3.57 16 14 C -0.10 -1.72 5.46 -104.60 -0.57 -2.29 16 15 C -0.07 -1.17 9.69 -39.60 -0.38 -1.56 16 16 C -0.14 -2.09 9.99 -39.43 -0.39 -2.49 16 17 C 0.08 1.26 6.48 -39.22 -0.25 1.01 16 18 O -0.33 -4.24 10.43 -19.41 -0.20 -4.44 16 19 C 0.41 4.02 5.98 101.05 0.60 4.63 16 20 F -0.20 -2.27 15.60 2.25 0.04 -2.23 16 21 F -0.20 -2.38 15.56 2.25 0.04 -2.35 16 22 C -0.19 -3.00 8.26 -39.43 -0.33 -3.32 16 23 C -0.08 -1.32 9.69 -39.61 -0.38 -1.70 16 24 H 0.19 3.63 7.80 -54.08 -0.42 3.21 16 25 H 0.09 2.37 6.59 -51.93 -0.34 2.03 16 26 H 0.04 0.76 8.12 -51.93 -0.42 0.33 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.05 0.93 8.01 -51.93 -0.42 0.51 16 29 H 0.06 1.19 7.98 -51.93 -0.41 0.78 16 30 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 31 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.18 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.12 1.82 5.10 -52.49 -0.27 1.55 16 34 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 308.71 15.07 4.65 4.65 Total: -1.00 -30.86 308.71 -5.81 -36.67 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -3.53 Total: 2.04 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -1.86 Total: -11.92 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.09 Total: -38.80 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.20 Total: -4.44 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.07 Total: -4.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.86 -5.81 -36.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281287953.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.401 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds