Wall clock time and date at job start Tue Mar 31 2020 05:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47148 * 240.33565 * 3 2 1 5 5 C 1.36935 * 120.00192 * 270.00138 * 4 3 2 6 6 H 1.07995 * 119.99946 * 14.86324 * 5 4 3 7 7 C 1.38814 * 120.00188 * 194.85931 * 5 4 3 8 8 N 1.31623 * 120.00015 * 318.39067 * 7 5 4 9 9 Si 1.86791 * 120.00031 * 138.38532 * 7 5 4 10 10 H 1.48506 * 109.47201 * 90.00454 * 9 7 5 11 11 H 1.48501 * 109.47208 * 210.00117 * 9 7 5 12 12 H 1.48502 * 109.47383 * 330.00296 * 9 7 5 13 13 C 1.46497 * 119.99573 * 89.99731 * 4 3 2 14 14 C 1.50701 * 109.47661 * 278.51452 * 13 4 3 15 15 C 1.38164 * 120.02912 * 263.63762 * 14 13 4 16 16 C 1.38243 * 120.05530 * 179.97438 * 15 14 13 17 17 C 1.38291 * 120.10971 * 359.97438 * 16 15 14 18 18 C 1.38122 * 120.05805 * 0.02562 * 17 16 15 19 19 C 1.38709 * 120.02413 * 83.61394 * 14 13 4 20 20 O 1.35898 * 120.05566 * 0.02562 * 19 14 13 21 21 C 1.42904 * 116.99756 * 180.02562 * 20 19 14 22 22 F 1.39904 * 109.46947 * 299.99466 * 21 20 19 23 23 F 1.39897 * 109.47388 * 59.99772 * 21 20 19 24 24 H 4.40648 * 5.51321 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.46822 * 120.33961 * 3 2 1 26 26 H 1.08996 * 109.46920 * 0.33873 * 3 2 1 27 27 H 0.96997 * 120.00141 * 173.08818 * 8 7 5 28 28 H 1.09011 * 109.46940 * 158.51437 * 13 4 3 29 29 H 1.09004 * 109.47059 * 38.52249 * 13 4 3 30 30 H 1.08001 * 119.97317 * 359.97438 * 15 14 13 31 31 H 1.07998 * 119.94479 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.97062 * 180.27702 * 17 16 15 33 33 H 1.07997 * 120.02831 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.47048 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.6845 1.2002 5 6 3.3617 2.0345 1.1742 6 1 2.9643 2.6337 0.3684 7 6 4.1032 2.6329 2.1837 8 7 3.9202 2.2730 3.4365 9 14 5.3608 3.9489 1.7642 10 1 4.7093 5.2831 1.7923 11 1 6.4630 3.9153 2.7587 12 1 5.9098 3.6946 0.4080 13 6 3.3785 -0.0762 2.4281 14 6 2.0768 -0.2822 3.1591 15 6 1.7166 0.5717 4.1838 16 6 0.5224 0.3835 4.8543 17 6 -0.3147 -0.6590 4.5011 18 6 0.0408 -1.5154 3.4774 19 6 1.2392 -1.3290 2.8032 20 8 1.5913 -2.1702 1.7957 21 6 0.6798 -3.2255 1.4832 22 9 0.5048 -4.0388 2.6081 23 9 -0.5521 -2.6811 1.1051 24 1 -1.0501 0.0000 -0.0003 25 1 3.0091 0.5199 -0.8869 26 1 3.0098 -1.0268 -0.0061 27 1 4.5052 2.6160 4.1300 28 1 4.0698 0.4753 3.0656 29 1 3.8108 -1.0445 2.1758 30 1 2.3685 1.3868 4.4612 31 1 0.2424 1.0523 5.6548 32 1 -1.2492 -0.8013 5.0235 33 1 -0.6135 -2.3291 3.2017 34 1 1.0811 -3.8214 0.6635 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281335984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:29 Heat of formation + Delta-G solvation = -21.930135 kcal Electronic energy + Delta-G solvation = -22929.313451 eV Core-core repulsion = 19273.367486 eV Total energy + Delta-G solvation = -3655.945965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.05142 -47.04382 -39.39005 -36.79441 -35.89158 -32.65514 -31.25264 -30.28887 -29.44307 -26.28664 -25.84815 -25.37011 -22.23782 -21.61805 -20.37995 -18.38801 -17.66186 -17.62303 -17.38890 -16.78781 -15.48655 -15.34292 -14.71525 -14.26243 -14.16826 -13.74222 -13.63982 -13.56722 -13.44756 -13.15793 -12.96024 -12.53283 -12.31805 -12.02282 -11.85542 -11.51006 -11.10735 -11.01353 -10.68808 -10.44484 -10.30246 -10.18041 -9.69027 -9.42273 -9.14535 -8.22360 -7.94877 -7.56713 -7.19676 -6.06438 -3.15620 2.16021 2.21569 3.06586 3.36567 3.48741 3.52913 3.73294 3.74812 3.84020 4.49420 4.56518 4.58414 4.96032 5.01094 5.38739 5.45698 5.58560 5.73678 5.84594 6.10008 6.25192 6.42355 6.52582 6.62082 6.66945 6.85569 6.91735 7.02562 7.16788 7.46880 7.64706 7.78256 7.80539 7.95981 8.25556 8.59837 9.05028 9.70822 10.17995 10.96548 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.006992 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.107846 B = 4003.457995 C = 4617.442354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.164 4.164 3 C 0.247 3.753 4 N -0.577 5.577 5 C -0.252 4.252 6 H 0.080 0.920 7 C 0.019 3.981 8 N -0.870 5.870 9 Si 0.867 3.133 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.280 1.280 13 C 0.163 3.837 14 C -0.082 4.082 15 C -0.058 4.058 16 C -0.164 4.164 17 C -0.109 4.109 18 C -0.207 4.207 19 C 0.102 3.898 20 O -0.309 6.309 21 C 0.408 3.592 22 F -0.208 7.208 23 F -0.199 7.199 24 H 0.195 0.805 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.258 0.742 28 H 0.135 0.865 29 H 0.025 0.975 30 H 0.173 0.827 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 -9.740 -1.395 10.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.167 4.167 3 C 0.120 3.880 4 N -0.295 5.295 5 C -0.378 4.378 6 H 0.098 0.902 7 C -0.178 4.178 8 N -0.515 5.515 9 Si 0.694 3.306 10 H -0.218 1.218 11 H -0.214 1.214 12 H -0.206 1.206 13 C 0.038 3.962 14 C -0.086 4.086 15 C -0.077 4.077 16 C -0.183 4.183 17 C -0.128 4.128 18 C -0.225 4.225 19 C 0.059 3.941 20 O -0.226 6.226 21 C 0.317 3.683 22 F -0.190 7.190 23 F -0.181 7.181 24 H 0.212 0.788 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.152 0.848 29 H 0.044 0.956 30 H 0.190 0.810 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.432 -9.599 -1.351 10.659 hybrid contribution -0.531 0.528 0.026 0.749 sum -4.963 -9.071 -1.325 10.425 Atomic orbital electron populations 1.24503 0.95527 1.03871 1.03553 1.25187 0.96152 0.97597 0.97725 1.18009 0.82069 0.96849 0.91061 1.44589 1.73927 1.05174 1.05793 1.19301 1.27024 0.83931 1.07584 0.90221 1.24633 1.00851 0.98214 0.94099 1.69932 1.35383 1.47351 0.98805 0.86838 0.83651 0.81727 0.78391 1.21759 1.21416 1.20626 1.21066 0.92450 0.94697 0.87977 1.20478 0.99744 0.91625 0.96706 1.21985 0.95543 0.97969 0.92155 1.21185 0.96348 0.98856 1.01879 1.20687 0.99078 0.95739 0.97277 1.21182 0.97123 1.03238 1.00992 1.18851 0.94784 0.91789 0.88669 1.86625 1.44857 1.39294 1.51851 1.23190 0.77224 0.82167 0.85699 1.93059 1.95442 1.73686 1.56805 1.93075 1.47000 1.86800 1.91217 0.78774 0.91045 0.91414 0.93178 0.84845 0.95639 0.81017 0.87176 0.87338 0.86642 0.81548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.00 18.05 29.55 0.53 -4.47 16 2 C -0.16 -3.38 10.90 -37.12 -0.40 -3.78 16 3 C 0.25 5.03 5.60 -6.83 -0.04 4.99 16 4 N -0.58 -13.65 2.51 -177.95 -0.45 -14.10 16 5 C -0.25 -6.50 9.56 -15.06 -0.14 -6.64 16 6 H 0.08 2.09 8.06 -52.49 -0.42 1.67 16 7 C 0.02 0.48 4.95 -17.43 -0.09 0.39 16 8 N -0.87 -22.06 7.78 55.49 0.43 -21.63 16 9 Si 0.87 20.01 29.70 -169.99 -5.05 14.96 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.16 3.75 5.06 -5.19 -0.03 3.72 16 14 C -0.08 -1.83 5.18 -104.47 -0.54 -2.37 16 15 C -0.06 -1.29 9.44 -39.61 -0.37 -1.66 16 16 C -0.16 -3.21 10.04 -39.56 -0.40 -3.61 16 17 C -0.11 -2.02 10.04 -39.60 -0.40 -2.41 16 18 C -0.21 -3.95 8.26 -39.43 -0.33 -4.27 16 19 C 0.10 2.07 5.26 -39.22 -0.21 1.87 16 20 O -0.31 -5.53 7.10 -19.42 -0.14 -5.66 16 21 C 0.41 5.70 5.98 101.05 0.60 6.30 16 22 F -0.21 -3.05 15.58 2.25 0.04 -3.02 16 23 F -0.20 -3.06 14.50 2.25 0.03 -3.03 16 24 H 0.20 3.31 7.80 -54.09 -0.42 2.89 16 25 H 0.07 1.38 8.04 -51.93 -0.42 0.97 16 26 H 0.07 1.25 7.50 -51.93 -0.39 0.86 16 27 H 0.26 6.30 8.33 -40.82 -0.34 5.96 16 28 H 0.13 3.33 4.72 -51.92 -0.24 3.08 16 29 H 0.03 0.55 7.61 -51.93 -0.40 0.16 16 30 H 0.17 4.07 5.33 -52.49 -0.28 3.79 16 31 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.12 2.06 5.10 -52.49 -0.27 1.79 16 34 H 0.17 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 293.55 15.07 4.42 4.42 Total: -1.00 -28.15 293.55 -5.76 -33.91 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.24 Total: 6.09 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.80 Total: -11.95 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.02 Total: -35.73 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.14 Total: -5.66 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.07 Total: -6.05 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.05 Total: 14.96 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.15 -5.76 -33.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281335984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.981 kcal (2) G-P(sol) polarization free energy of solvation -28.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds