Wall clock time and date at job start Tue Mar 31 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47080 * 2 1 4 4 C 1.46499 * 119.99696 * 91.12169 * 3 2 1 5 5 C 1.50708 * 109.47152 * 90.00609 * 4 3 2 6 6 H 1.07996 * 119.99672 * 359.97438 * 5 4 3 7 7 C 1.37869 * 119.99992 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99949 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00448 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47084 * 89.99710 * 9 7 5 11 11 H 1.48492 * 109.47314 * 210.00275 * 9 7 5 12 12 H 1.48505 * 109.46723 * 329.99997 * 9 7 5 13 13 C 1.34774 * 119.99955 * 271.12352 * 3 2 1 14 14 O 1.21627 * 119.99854 * 185.57504 * 13 3 2 15 15 C 1.47173 * 120.00237 * 5.58157 * 13 3 2 16 16 S 1.77329 * 128.47463 * 6.87993 * 15 13 3 17 17 N 1.56631 * 95.28333 * 179.97438 * 16 15 13 18 18 N 1.27334 * 109.74407 * 0.02562 * 17 16 15 19 19 C 1.31248 * 120.03547 * 359.71662 * 18 17 16 20 20 C 1.50696 * 124.05792 * 180.34194 * 19 18 17 21 21 C 1.52996 * 117.49904 * 8.90902 * 20 19 18 22 22 C 1.53005 * 117.49407 * 300.25425 * 20 19 18 23 23 H 1.08998 * 109.46966 * 60.00127 * 1 2 3 24 24 H 1.09004 * 109.46835 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47090 * 299.99937 * 1 2 3 26 26 H 1.08999 * 109.47540 * 240.00141 * 2 1 3 27 27 H 1.08998 * 109.46966 * 119.99873 * 2 1 3 28 28 H 1.09003 * 109.47024 * 210.00088 * 4 3 2 29 29 H 1.08995 * 109.47712 * 330.00366 * 4 3 2 30 30 H 0.96995 * 120.00416 * 180.02562 * 8 7 5 31 31 H 1.08993 * 115.55002 * 154.58993 * 20 19 18 32 32 H 1.09005 * 117.49789 * 0.02562 * 21 20 19 33 33 H 1.08998 * 117.49663 * 145.02394 * 21 20 19 34 34 H 1.09002 * 117.49427 * 214.98335 * 22 20 19 35 35 H 1.09001 * 117.50236 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2859 2.0635 1.2685 5 6 3.7171 1.8241 1.6756 6 1 4.3625 1.2234 1.0520 7 6 4.2022 2.3718 2.8441 8 7 5.4510 2.1625 3.1996 9 14 3.0860 3.4114 3.9224 10 1 2.3985 2.5397 4.9085 11 1 3.8971 4.4271 4.6403 12 1 2.0750 4.0938 3.0753 13 6 2.2214 2.0242 -1.1670 14 8 2.7218 3.1328 -1.1714 15 6 1.8375 1.3850 -2.4358 16 16 0.9512 -0.1307 -2.6838 17 7 0.9784 -0.0594 -4.2483 18 7 1.5898 0.9937 -4.6203 19 6 2.0753 1.8222 -3.7256 20 6 2.8065 3.0958 -4.0637 21 6 2.8083 3.5422 -5.5271 22 6 4.0839 2.9769 -4.8975 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1166 3.1336 1.1483 29 1 1.6193 1.6744 2.0381 30 1 5.7923 2.5475 4.0218 31 1 2.7743 3.8732 -3.3004 32 1 2.2803 2.9148 -6.2453 33 1 2.7776 4.6133 -5.7265 34 1 4.8918 3.6764 -4.6828 35 1 4.3956 1.9775 -5.2011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290485169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:00 Heat of formation + Delta-G solvation = 73.047430 kcal Electronic energy + Delta-G solvation = -19975.259010 eV Core-core repulsion = 16909.564718 eV Total energy + Delta-G solvation = -3065.694291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89278 -39.24966 -36.89987 -35.71086 -32.96062 -31.71270 -30.57891 -28.48777 -26.83527 -24.07599 -23.31543 -22.59195 -22.30531 -21.10055 -18.85190 -18.16192 -17.09055 -16.76642 -16.19707 -15.75103 -15.33711 -14.63274 -14.56273 -14.15372 -13.96065 -13.58681 -12.87200 -12.65888 -12.40952 -12.18755 -11.98845 -11.84708 -11.65853 -11.52663 -11.43667 -11.05332 -10.99277 -10.66593 -10.37969 -10.22130 -9.87108 -9.67380 -9.48381 -9.37481 -9.24273 -8.67532 -7.99390 -6.16392 -4.16666 -0.11597 0.90370 1.62594 2.02992 3.20385 3.27514 3.31876 3.35159 3.49291 3.85785 4.05850 4.31827 4.50878 4.66353 4.93811 4.98246 5.07807 5.16512 5.17930 5.22547 5.41840 5.67947 5.69393 5.74910 5.90902 5.92593 6.16724 6.18226 6.29072 6.49039 6.78904 7.05902 7.48370 7.76426 7.91812 8.34046 8.60657 8.86881 9.42171 10.96770 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.005896 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.401623 B = 4747.967381 C = 5695.386408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 N -0.580 5.580 4 C 0.219 3.781 5 C -0.533 4.533 6 H 0.076 0.924 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.590 3.410 14 O -0.508 6.508 15 C -0.273 4.273 16 S 0.432 5.568 17 N -0.296 5.296 18 N -0.252 5.252 19 C 0.117 3.883 20 C -0.084 4.084 21 C -0.163 4.163 22 C -0.156 4.156 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.266 0.734 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 -3.603 -10.753 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.032 4.032 3 N -0.312 5.312 4 C 0.100 3.900 5 C -0.571 4.571 6 H 0.094 0.906 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.188 1.188 13 C 0.374 3.626 14 O -0.384 6.384 15 C -0.414 4.414 16 S 0.571 5.429 17 N -0.275 5.275 18 N -0.118 5.118 19 C -0.028 4.028 20 C -0.106 4.106 21 C -0.201 4.201 22 C -0.194 4.194 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.629 -4.573 -11.363 16.217 hybrid contribution 0.300 1.514 1.043 1.862 sum -10.330 -3.059 -10.320 14.919 Atomic orbital electron populations 1.22408 0.95969 1.02866 1.02486 1.21776 0.94108 0.84026 1.03250 1.47839 1.63460 1.13044 1.06835 1.19773 0.97564 0.93660 0.79036 1.21272 0.94742 1.33612 1.07477 0.90596 1.24838 0.94987 0.95641 0.97346 1.69886 1.14388 1.44794 1.24117 0.86890 0.81202 0.80923 0.80998 1.19998 1.20828 1.18810 1.16445 0.79629 0.85424 0.81085 1.90784 1.42664 1.19369 1.85556 1.28001 1.11012 1.02516 0.99840 1.83102 1.39319 1.16502 1.04006 1.78544 1.18942 1.16494 1.13493 1.70599 1.10217 0.99058 1.31903 1.21868 0.97436 0.97004 0.86536 1.20654 1.00161 0.93349 0.96434 1.23042 1.01132 1.01608 0.94275 1.22997 0.91202 1.03023 1.02153 0.92916 0.90599 0.90964 0.91916 0.87739 0.93764 0.95003 0.92428 0.83562 0.87789 0.88115 0.87670 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 9.11 37.16 0.34 -1.63 16 2 C 0.09 1.36 5.63 -4.04 -0.02 1.33 16 3 N -0.58 -11.24 2.46 -176.42 -0.43 -11.67 16 4 C 0.22 4.99 4.18 -5.19 -0.02 4.97 16 5 C -0.53 -14.57 9.94 -34.44 -0.34 -14.91 16 6 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 9 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 13 C 0.59 11.80 7.64 -12.63 -0.10 11.70 16 14 O -0.51 -11.77 14.59 5.25 0.08 -11.70 16 15 C -0.27 -4.55 6.41 -35.95 -0.23 -4.78 16 16 S 0.43 5.59 16.56 -107.50 -1.78 3.81 16 17 N -0.30 -4.44 12.51 60.35 0.75 -3.68 16 18 N -0.25 -4.03 10.95 33.42 0.37 -3.66 16 19 C 0.12 1.91 6.59 -82.84 -0.55 1.37 16 20 C -0.08 -1.27 5.69 -91.77 -0.52 -1.79 16 21 C -0.16 -1.94 10.11 -26.70 -0.27 -2.21 16 22 C -0.16 -2.00 10.24 -26.69 -0.27 -2.27 16 23 H 0.05 0.58 6.04 -47.07 -0.28 0.30 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.83 4.76 -27.50 -0.13 0.70 16 27 H 0.10 1.50 8.06 -51.93 -0.42 1.08 16 28 H 0.04 1.08 6.56 -51.93 -0.34 0.74 16 29 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.15 2.40 6.55 -51.93 -0.34 2.06 16 32 H 0.10 1.25 7.80 -51.93 -0.41 0.85 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -32.17 304.61 -6.42 -38.59 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.01 Total: 0.06 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.08 Total: -6.22 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 1.46 Total: -44.95 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 5.59 SS G_CDS: -1.78 Total: 3.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.17 -6.42 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290485169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.640 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds