Wall clock time and date at job start Tue Mar 31 2020 05:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47422 * 2 1 4 4 H 1.09001 * 109.46964 * 304.99290 * 3 2 1 5 5 C 1.50697 * 109.47001 * 184.99794 * 3 2 1 6 6 H 1.08004 * 119.99601 * 239.99219 * 5 3 2 7 7 C 1.37873 * 120.00680 * 60.00029 * 5 3 2 8 8 N 1.31521 * 119.99311 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47424 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47168 * 120.00200 * 9 7 5 12 12 H 1.48505 * 109.47117 * 239.99837 * 9 7 5 13 13 N 1.46501 * 109.47196 * 64.99494 * 3 2 1 14 14 C 1.34771 * 120.00240 * 275.00366 * 13 3 2 15 15 O 1.21627 * 119.99810 * 359.97438 * 14 13 3 16 16 C 1.47172 * 120.00234 * 180.02562 * 14 13 3 17 17 S 1.77333 * 128.47538 * 0.02562 * 16 14 13 18 18 N 1.56635 * 95.28062 * 179.97438 * 17 16 14 19 19 N 1.27330 * 109.74470 * 359.97438 * 18 17 16 20 20 C 1.31244 * 120.03707 * 0.02562 * 19 18 17 21 21 C 1.50697 * 124.05509 * 179.97438 * 20 19 18 22 22 C 1.53009 * 117.49935 * 8.77112 * 21 20 19 23 23 C 1.53001 * 117.50099 * 300.11219 * 21 20 19 24 24 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47283 * 300.00467 * 1 2 3 26 26 H 1.08999 * 109.46286 * 60.00163 * 1 2 3 27 27 H 1.08997 * 109.47283 * 239.99533 * 2 1 3 28 28 H 1.09005 * 109.46695 * 119.99976 * 2 1 3 29 29 H 0.96999 * 119.99889 * 180.02562 * 8 7 5 30 30 H 0.96999 * 119.99852 * 95.00114 * 13 3 2 31 31 H 1.08995 * 115.55062 * 154.44062 * 21 20 19 32 32 H 1.08997 * 117.49392 * 0.02562 * 22 21 20 33 33 H 1.09000 * 117.49673 * 145.01674 * 22 21 20 34 34 H 1.08997 * 117.50120 * 214.98035 * 23 21 20 35 35 H 1.09004 * 117.49834 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6056 1.9815 -0.8419 5 6 3.5420 1.4441 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1435 0.8782 -1.2278 8 7 3.4063 0.3364 -2.1727 9 14 6.0051 0.8810 -1.3815 10 1 6.5988 1.5471 -0.1945 11 1 6.4971 -0.5177 -1.4627 12 1 6.3992 1.6164 -2.6100 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3414 2.6326 0.4313 16 6 0.0460 3.3230 2.6242 17 16 0.9904 3.5016 4.1144 18 7 -0.1195 4.2833 4.8956 19 7 -1.1436 4.4326 4.1538 20 6 -1.1447 3.9544 2.9316 21 6 -2.3049 4.0785 1.9779 22 6 -3.4688 4.9802 2.3948 23 6 -3.6379 3.4588 2.4025 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8294 -0.0620 -2.9493 30 1 2.2719 2.1232 1.9977 31 1 -2.0488 4.0446 0.9190 32 1 -3.3949 5.4838 3.3586 33 1 -3.9784 5.5392 1.6100 34 1 -4.2588 3.0175 1.6229 35 1 -3.6755 2.9609 3.3714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290635241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:24 Heat of formation + Delta-G solvation = 53.475118 kcal Electronic energy + Delta-G solvation = -19762.603121 eV Core-core repulsion = 16696.060111 eV Total energy + Delta-G solvation = -3066.543010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98251 -39.05490 -36.96616 -35.22672 -32.64299 -31.84976 -30.85943 -27.78395 -26.72171 -23.97816 -23.02111 -22.37178 -21.90939 -20.21814 -19.63701 -17.98906 -17.58802 -16.13482 -15.85447 -15.79381 -15.32702 -14.61692 -14.52772 -14.35447 -13.56387 -13.02267 -12.78929 -12.27966 -12.16783 -11.85600 -11.66180 -11.55274 -11.35016 -11.16437 -11.03860 -10.92987 -10.45069 -10.41340 -10.31715 -10.17621 -9.78852 -9.68683 -9.40672 -9.33444 -9.15774 -8.60931 -8.05269 -6.21646 -4.31693 -0.16131 0.88701 1.52769 1.95944 3.18696 3.27102 3.29121 3.46036 3.65747 3.81894 4.01527 4.28615 4.45203 4.91085 5.01313 5.10291 5.12105 5.24174 5.63005 5.66475 5.86482 6.11744 6.23437 6.30058 6.35893 6.54892 6.93076 7.06531 7.15648 7.26324 7.47812 7.58506 7.69119 7.76749 8.05543 8.40084 8.60449 8.83603 9.35583 10.83743 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.004942 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.450571 B = 5664.529715 C = 6425.977267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.694 5.694 14 C 0.584 3.416 15 O -0.518 6.518 16 C -0.262 4.262 17 S 0.405 5.595 18 N -0.267 5.267 19 N -0.249 5.249 20 C 0.115 3.885 21 C -0.081 4.081 22 C -0.164 4.164 23 C -0.156 4.156 24 H 0.025 0.975 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.102 0.898 28 H 0.033 0.967 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 4.594 9.378 12.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.342 5.342 14 C 0.366 3.634 15 O -0.396 6.396 16 C -0.403 4.403 17 S 0.541 5.459 18 N -0.247 5.247 19 N -0.116 5.116 20 C -0.031 4.031 21 C -0.103 4.103 22 C -0.202 4.202 23 C -0.194 4.194 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.120 0.880 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.165 0.835 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.976 4.880 10.326 13.383 hybrid contribution 0.725 -0.262 -0.903 1.187 sum -6.250 4.618 9.423 12.214 Atomic orbital electron populations 1.21856 0.98247 0.98337 1.01208 1.21960 0.92691 0.99486 1.02608 1.18940 0.94631 0.89310 0.80157 0.92738 1.21224 0.90371 1.39424 1.06544 0.91878 1.24868 0.98744 0.94618 0.95272 1.69895 1.35167 1.37354 1.09340 0.86383 0.84619 0.77857 0.78209 1.19669 1.20803 1.20827 1.46510 1.13473 1.55100 1.19103 1.16485 0.83522 0.79294 0.84129 1.90781 1.51315 1.59455 1.38053 1.28196 0.99054 1.10395 1.02617 1.82596 1.24008 1.40002 0.99309 1.78814 1.01817 1.18420 1.25646 1.70448 1.17562 1.19712 1.03849 1.21864 0.95219 0.95009 0.90999 1.20629 0.84675 1.07168 0.97818 1.23055 1.00161 0.93235 1.03704 1.22986 0.97281 0.96038 1.03103 0.95617 0.94410 0.92952 0.87958 0.94837 0.92478 0.77970 0.83533 0.87795 0.88068 0.87746 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.60 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.37 2.24 -69.08 -0.15 6.21 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.39 8.73 -34.44 -0.30 -13.69 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.52 11.29 55.43 0.63 -22.90 16 9 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.69 -13.49 5.02 -56.09 -0.28 -13.77 16 14 C 0.58 10.99 6.37 -12.64 -0.08 10.91 16 15 O -0.52 -10.94 12.10 5.25 0.06 -10.88 16 16 C -0.26 -4.16 6.80 -35.95 -0.24 -4.40 16 17 S 0.40 5.22 23.05 -107.50 -2.48 2.75 16 18 N -0.27 -3.91 12.51 60.35 0.75 -3.16 16 19 N -0.25 -3.83 10.95 33.42 0.37 -3.46 16 20 C 0.12 1.77 6.59 -82.84 -0.55 1.23 16 21 C -0.08 -1.13 5.63 -91.77 -0.52 -1.65 16 22 C -0.16 -1.83 10.11 -26.69 -0.27 -2.10 16 23 C -0.16 -1.81 10.24 -26.69 -0.27 -2.09 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.77 5.64 -51.93 -0.29 0.47 16 26 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 27 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.39 6.56 7.97 -40.82 -0.33 6.24 16 31 H 0.15 2.23 6.63 -51.93 -0.34 1.89 16 32 H 0.10 1.19 7.80 -51.93 -0.41 0.78 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -27.70 307.92 -7.77 -35.47 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.13 Total: 6.17 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -2.31 Total: -9.60 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 1.47 Total: -43.29 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.06 Total: -10.88 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -2.48 Total: 2.75 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.70 -7.77 -35.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290635241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.947 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds