Wall clock time and date at job start Tue Mar 31 2020 05:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47196 * 2 1 4 4 N 1.46506 * 109.47171 * 240.00395 * 2 1 3 5 5 C 1.34773 * 119.99968 * 84.99494 * 4 2 1 6 6 O 1.21283 * 120.00360 * 359.73034 * 5 4 2 7 7 C 1.50706 * 120.00081 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47348 * 179.72561 * 7 5 4 9 9 C 1.50696 * 109.46969 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00408 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99883 * 180.02562 * 9 8 7 12 12 N 1.31508 * 119.99834 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99926 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47025 * 59.99930 * 13 11 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47148 * 300.00133 * 13 11 9 17 17 C 1.50696 * 109.47280 * 120.00287 * 2 1 3 18 18 C 1.38244 * 119.98483 * 79.72758 * 17 2 1 19 19 C 1.38213 * 120.00848 * 179.72669 * 18 17 2 20 20 C 1.38359 * 119.98780 * 0.54267 * 19 18 17 21 21 Cl 1.73600 * 120.01126 * 179.70432 * 20 19 18 22 22 C 1.38344 * 119.97425 * 359.72848 * 20 19 18 23 23 C 1.38216 * 119.98430 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46922 * 299.99659 * 1 2 3 26 26 H 1.09007 * 109.47428 * 59.99827 * 1 2 3 27 27 H 0.96998 * 119.99507 * 265.00350 * 4 2 1 28 28 H 1.09001 * 109.46564 * 299.73030 * 7 5 4 29 29 H 1.08998 * 109.47012 * 59.72084 * 7 5 4 30 30 H 1.09000 * 109.46986 * 300.00089 * 8 7 5 31 31 H 1.09002 * 109.46857 * 60.00224 * 8 7 5 32 32 H 0.96999 * 119.99905 * 179.97438 * 12 11 9 33 33 H 1.07995 * 119.99641 * 0.02562 * 18 17 2 34 34 H 1.08006 * 120.00664 * 180.26871 * 19 18 17 35 35 H 1.07997 * 120.00994 * 179.97438 * 22 20 19 36 36 H 1.08003 * 119.99406 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0182 -2.3572 6 8 1.8538 1.1574 -2.4129 7 6 2.6487 -0.7286 -3.5879 8 6 2.6937 0.2529 -4.7607 9 6 3.1961 -0.4575 -5.9911 10 1 3.4568 -1.5043 -5.9417 11 6 3.3229 0.2292 -7.1801 12 7 3.0060 1.5041 -7.2401 13 14 3.9450 -0.6515 -8.7055 14 1 3.0316 -1.7748 -9.0356 15 1 3.9888 0.3011 -9.8438 16 1 5.3086 -1.1812 -8.4498 17 6 2.0323 -0.7104 1.2304 18 6 2.0613 -2.0921 1.2670 19 6 2.5272 -2.7441 2.3930 20 6 2.9541 -2.0140 3.4880 21 17 3.5323 -2.8324 4.9056 22 6 2.9196 -0.6314 3.4529 23 6 2.4582 0.0196 2.3243 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 2.2489 -1.6317 -1.1527 28 1 3.6498 -1.1169 -3.4003 29 1 1.9786 -1.5535 -3.8298 30 1 1.6926 0.6411 -4.9481 31 1 3.3640 1.0777 -4.5187 32 1 3.0956 1.9872 -8.0765 33 1 1.7244 -2.6620 0.4137 34 1 2.5539 -3.8235 2.4199 35 1 3.2523 -0.0609 4.3074 36 1 2.4316 1.0989 2.2965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290966483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:50 Heat of formation + Delta-G solvation = -39.233474 kcal Electronic energy + Delta-G solvation = -18665.391014 eV Core-core repulsion = 15560.491400 eV Total energy + Delta-G solvation = -3104.899614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20243 -38.91099 -36.90929 -35.30113 -33.45018 -31.86884 -31.37830 -30.65723 -29.15510 -25.79126 -24.02795 -23.31330 -21.93188 -20.60413 -19.69556 -17.70154 -16.88065 -16.25521 -15.94144 -15.33274 -14.94639 -14.92567 -14.41818 -14.04329 -13.85295 -13.81199 -13.38149 -13.06735 -12.69225 -12.25411 -12.07641 -12.02195 -11.82069 -11.50341 -11.19742 -11.16736 -11.05503 -10.90963 -10.62028 -9.95731 -9.67301 -9.39824 -9.22373 -9.09416 -8.93815 -8.79643 -8.31942 -5.96176 -4.00632 0.76181 0.93780 1.79692 3.18581 3.25007 3.34348 3.38998 3.40509 3.55030 4.35329 4.42091 4.47447 4.53218 4.95016 5.01196 5.14969 5.24083 5.35584 5.38704 5.49175 5.57005 5.64847 5.82089 5.87057 5.89416 6.12585 6.19688 6.23237 6.24002 6.42790 6.70865 6.88451 7.73773 7.83868 7.85989 8.06957 8.38416 8.75053 9.07750 9.62841 11.14748 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032036 B = 0.002803 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.816743 B = 9988.524755 C =10498.469644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 H 0.097 0.903 4 N -0.740 5.740 5 C 0.512 3.488 6 O -0.533 6.533 7 C -0.130 4.130 8 C 0.038 3.962 9 C -0.528 4.528 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.079 4.079 18 C -0.101 4.101 19 C -0.106 4.106 20 C -0.038 4.038 21 Cl -0.074 7.074 22 C -0.107 4.107 23 C -0.096 4.096 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.396 0.604 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.261 0.739 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 -8.424 23.684 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.075 3.925 3 H 0.115 0.885 4 N -0.395 5.395 5 C 0.301 3.699 6 O -0.407 6.407 7 C -0.170 4.170 8 C 0.000 4.000 9 C -0.566 4.566 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.080 4.080 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.065 4.065 21 Cl -0.046 7.046 22 C -0.126 4.126 23 C -0.115 4.115 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.231 0.769 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.405 -7.457 23.618 24.884 hybrid contribution 0.525 -1.031 -0.628 1.317 sum -1.880 -8.488 22.990 24.579 Atomic orbital electron populations 1.22169 0.94222 1.02340 1.02867 1.19729 0.94224 0.96978 0.81618 0.88530 1.46382 1.69643 1.13918 1.09537 1.21583 0.76323 0.87620 0.84414 1.90668 1.48810 1.16452 1.84812 1.21877 1.00939 1.01058 0.93145 1.18890 0.98359 0.93333 0.89414 1.21187 1.44476 0.96415 0.94565 0.92669 1.25024 0.95541 0.94848 0.98953 1.69983 1.48031 1.08218 1.26610 0.86652 0.79361 0.79367 0.82543 1.20256 1.21284 1.20246 1.20173 0.98051 0.93955 0.95781 1.20946 0.99281 0.93862 0.97898 1.21044 0.98949 1.00469 0.92015 1.20958 1.03068 0.92906 0.89544 1.98374 1.87441 1.79247 1.39498 1.21048 1.00099 0.92254 0.99157 1.21027 0.97822 1.00508 0.92142 0.92381 0.91810 0.91126 0.76938 0.90240 0.90222 0.95818 0.95824 0.92885 0.84917 0.84776 0.84792 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.46 37.15 0.35 -1.39 16 2 C 0.18 2.13 2.77 -69.08 -0.19 1.94 16 3 H 0.10 1.31 7.44 -51.93 -0.39 0.92 16 4 N -0.74 -9.90 5.03 -54.93 -0.28 -10.18 16 5 C 0.51 9.52 7.79 -10.98 -0.09 9.43 16 6 O -0.53 -12.13 15.65 5.56 0.09 -12.05 16 7 C -0.13 -2.59 5.64 -27.88 -0.16 -2.75 16 8 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 9 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 10 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 13 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.08 -0.77 4.95 -104.62 -0.52 -1.29 16 18 C -0.10 -0.88 9.05 -39.59 -0.36 -1.24 16 19 C -0.11 -0.89 9.83 -39.55 -0.39 -1.28 16 20 C -0.04 -0.34 6.32 -39.50 -0.25 -0.59 16 21 Cl -0.07 -0.63 28.96 -51.86 -1.50 -2.13 16 22 C -0.11 -0.90 9.83 -39.55 -0.39 -1.29 16 23 C -0.10 -0.86 9.67 -39.59 -0.38 -1.24 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 27 H 0.40 4.20 6.88 -40.82 -0.28 3.92 16 28 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.13 0.95 6.93 -52.49 -0.36 0.58 16 34 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.02 8.04 -52.48 -0.42 0.60 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -33.28 326.29 -8.75 -42.04 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.79 Total: -0.08 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.90 Total: -12.46 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.46 Total: -36.83 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.28 -8.75 -42.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290966483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.802 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds