Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47224 * 2 1 4 4 N 1.46497 * 109.46766 * 120.00518 * 2 1 3 5 5 C 1.34780 * 119.99692 * 274.99257 * 4 2 1 6 6 O 1.21278 * 119.99836 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00061 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47300 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47300 * 179.97438 * 8 7 5 10 10 H 1.07996 * 120.00047 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00017 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99806 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 120.00137 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47141 * 89.99564 * 13 11 9 15 15 H 1.48496 * 109.47058 * 209.99663 * 13 11 9 16 16 H 1.48500 * 109.46593 * 329.99591 * 13 11 9 17 17 C 1.50703 * 109.46885 * 239.99771 * 2 1 3 18 18 C 1.38235 * 120.01086 * 265.00130 * 17 2 1 19 19 C 1.38221 * 120.01454 * 179.74853 * 18 17 2 20 20 C 1.38258 * 120.02693 * 0.02562 * 19 18 17 21 21 C 1.38193 * 120.01234 * 359.97438 * 20 19 18 22 22 C 1.38335 * 120.00097 * 84.73110 * 17 2 1 23 23 Cl 1.73597 * 120.01783 * 0.24590 * 22 17 2 24 24 H 1.09000 * 109.47519 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47117 * 299.99865 * 1 2 3 26 26 H 1.09007 * 109.47419 * 59.99777 * 1 2 3 27 27 H 0.96997 * 120.00383 * 95.00348 * 4 2 1 28 28 H 1.08994 * 109.47235 * 300.00547 * 7 5 4 29 29 H 1.08996 * 109.47278 * 60.00431 * 7 5 4 30 30 H 1.09000 * 109.47346 * 300.00648 * 8 7 5 31 31 H 1.09000 * 109.47219 * 60.00214 * 8 7 5 32 32 H 0.97004 * 119.99935 * 180.02562 * 12 11 9 33 33 H 1.07995 * 119.98862 * 359.72708 * 18 17 2 34 34 H 1.08001 * 119.98312 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99226 * 179.97438 * 20 19 18 36 36 H 1.08004 * 120.00879 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8583 1.1583 2.4116 7 6 2.6498 -0.7287 3.5874 8 6 2.7007 0.2542 4.7588 9 6 3.2029 -0.4562 5.9893 10 1 3.4604 -1.5039 5.9406 11 6 3.3345 0.2316 7.1770 12 7 3.7723 -0.3886 8.2509 13 14 2.8897 2.0439 7.2611 14 1 1.4569 2.1856 7.6251 15 1 3.7295 2.7126 8.2871 16 1 3.1290 2.6742 5.9379 17 6 2.0323 -0.7105 -1.2305 18 6 2.3611 -2.0517 -1.1686 19 6 2.8168 -2.7047 -2.2984 20 6 2.9447 -2.0168 -3.4909 21 6 2.6163 -0.6759 -3.5540 22 6 2.1591 -0.0218 -2.4235 23 17 1.7458 1.6624 -2.5022 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 2.2490 -1.6318 1.1525 28 1 1.9776 -1.5509 3.8324 29 1 3.6491 -1.1205 3.3979 30 1 3.3726 1.0768 4.5140 31 1 1.7012 0.6457 4.9483 32 1 3.8646 0.0952 9.0866 33 1 2.2621 -2.5894 -0.2372 34 1 3.0739 -3.7525 -2.2494 35 1 3.3012 -2.5275 -4.3732 36 1 2.7158 -0.1387 -4.4856 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291052290.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = -31.025056 kcal Electronic energy + Delta-G solvation = -19042.258892 eV Core-core repulsion = 15937.715221 eV Total energy + Delta-G solvation = -3104.543670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29427 -38.97447 -36.71499 -35.61257 -33.46984 -31.95802 -31.13916 -30.99748 -29.35691 -26.16241 -24.13377 -23.21147 -21.73078 -20.53228 -19.76276 -17.84287 -17.04881 -16.36154 -16.05822 -15.50124 -15.09914 -14.86893 -14.30102 -14.18707 -14.06759 -13.62463 -13.42858 -13.01992 -12.57441 -12.52904 -12.25567 -11.95332 -11.80872 -11.76767 -11.40443 -11.36793 -10.95392 -10.80998 -10.15588 -10.03556 -9.77474 -9.34823 -9.22688 -9.16085 -9.09566 -8.86033 -8.49726 -6.02209 -4.00891 0.78135 0.87384 1.85188 3.10964 3.22559 3.38861 3.39625 3.45696 3.56882 4.22900 4.40591 4.52024 4.59872 4.91921 4.96576 5.09280 5.20582 5.28640 5.33435 5.40181 5.51876 5.63101 5.75363 5.84717 6.00981 6.04007 6.09137 6.10297 6.14386 6.40049 6.62693 6.69738 7.37571 7.44734 7.72779 7.80367 8.50630 8.64657 9.00803 9.60966 11.10605 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.003600 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.920989 B = 7776.877221 C = 8395.278085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.177 3.823 3 H 0.103 0.897 4 N -0.739 5.739 5 C 0.512 3.488 6 O -0.537 6.537 7 C -0.122 4.122 8 C 0.001 3.999 9 C -0.525 4.525 10 H 0.072 0.928 11 C 0.069 3.931 12 N -0.904 5.904 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.261 1.261 17 C -0.076 4.076 18 C -0.105 4.105 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.030 4.030 23 Cl -0.062 7.062 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.396 0.604 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.263 0.737 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 -4.438 -26.564 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.072 3.928 3 H 0.121 0.879 4 N -0.394 5.394 5 C 0.301 3.699 6 O -0.412 6.412 7 C -0.162 4.162 8 C -0.036 4.036 9 C -0.563 4.563 10 H 0.091 0.909 11 C -0.132 4.132 12 N -0.543 5.543 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.185 1.185 17 C -0.077 4.077 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.131 4.131 21 C -0.126 4.126 22 C -0.057 4.057 23 Cl -0.033 7.033 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.233 0.767 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.144 -3.381 -26.315 26.853 hybrid contribution -0.103 0.517 0.068 0.531 sum -4.247 -2.864 -26.247 26.742 Atomic orbital electron populations 1.22131 0.93890 1.02359 1.03063 1.19767 0.94479 0.97242 0.81350 0.87883 1.46376 1.69480 1.14003 1.09563 1.21560 0.76285 0.87582 0.84512 1.90656 1.49202 1.16412 1.84931 1.21674 1.01678 1.00639 0.92200 1.19369 0.97574 0.94596 0.92108 1.21111 1.44173 0.98273 0.92703 0.90948 1.24972 0.94443 0.98290 0.95539 1.69914 1.46897 1.36733 1.00734 0.86798 0.78622 0.85785 0.78372 1.20237 1.21450 1.18505 1.19902 0.99341 0.94374 0.94090 1.20935 0.99125 0.93109 0.99158 1.21258 0.98458 1.00439 0.92534 1.21138 0.99831 0.93656 0.98440 1.21061 0.99178 0.94982 0.97330 1.20755 1.03758 0.86125 0.95080 1.98389 1.91958 1.14568 1.98399 0.92310 0.91065 0.91639 0.76731 0.89580 0.89578 0.95795 0.96240 0.92728 0.84978 0.85085 0.85025 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.47 37.16 0.35 -1.50 16 2 C 0.18 2.26 2.29 -69.08 -0.16 2.10 16 3 H 0.10 1.56 6.57 -51.93 -0.34 1.22 16 4 N -0.74 -9.99 5.00 -54.94 -0.27 -10.27 16 5 C 0.51 9.31 7.79 -10.99 -0.09 9.23 16 6 O -0.54 -11.88 15.64 5.56 0.09 -11.79 16 7 C -0.12 -2.35 5.64 -27.89 -0.16 -2.51 16 8 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 9 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 10 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 13 Si 0.88 22.72 27.47 -169.99 -4.67 18.05 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 17 C -0.08 -0.81 5.06 -104.59 -0.53 -1.34 16 18 C -0.10 -0.91 9.24 -39.59 -0.37 -1.28 16 19 C -0.11 -0.78 10.05 -39.58 -0.40 -1.18 16 20 C -0.11 -0.78 10.05 -39.59 -0.40 -1.18 16 21 C -0.11 -0.87 9.83 -39.55 -0.39 -1.26 16 22 C -0.03 -0.31 6.31 -39.49 -0.25 -0.56 16 23 Cl -0.06 -0.67 27.15 -51.86 -1.41 -2.07 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.70 7.89 -51.92 -0.41 0.30 16 27 H 0.40 4.16 6.20 -40.82 -0.25 3.90 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.02 0.63 7.16 -51.93 -0.37 0.25 16 31 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.13 0.95 6.07 -52.49 -0.32 0.63 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -34.03 318.61 -8.22 -42.25 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.63 Total: -0.69 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.90 Total: -12.97 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.50 Total: -37.59 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.67 Total: 18.05 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.41 Total: -2.07 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.03 -8.22 -42.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291052290.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.229 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds