Wall clock time and date at job start Tue Mar 31 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37103 * 119.99568 * 2 1 4 4 H 1.08001 * 119.99770 * 204.39549 * 3 2 1 5 5 C 1.38946 * 120.00327 * 24.39546 * 3 2 1 6 6 N 1.31412 * 119.99563 * 12.64202 * 5 3 2 7 7 Si 1.86795 * 120.00138 * 192.64129 * 5 3 2 8 8 H 1.48490 * 109.47226 * 60.00024 * 7 5 3 9 9 H 1.48500 * 109.47051 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47074 * 299.99947 * 7 5 3 11 11 C 1.34778 * 120.00350 * 180.02562 * 2 1 3 12 12 O 1.21292 * 120.00138 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99615 * 359.97438 * 11 2 1 14 14 C 1.53001 * 109.46848 * 179.97438 * 13 11 2 15 15 C 1.52995 * 109.47033 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47214 * 180.02562 * 15 14 13 17 17 C 1.38243 * 120.00962 * 99.99730 * 16 15 14 18 18 C 1.38218 * 120.01459 * 179.97438 * 17 16 15 19 19 C 1.38262 * 120.02773 * 0.04361 * 18 17 16 20 20 C 1.38193 * 120.01240 * 359.97438 * 19 18 17 21 21 C 1.38339 * 120.00717 * 279.72898 * 16 15 14 22 22 Cl 1.73600 * 120.01124 * 359.97299 * 21 16 15 23 23 H 1.08998 * 109.46413 * 265.86238 * 1 2 3 24 24 H 1.08996 * 109.47060 * 25.86329 * 1 2 3 25 25 H 1.09000 * 109.47106 * 145.86207 * 1 2 3 26 26 H 0.97001 * 119.99481 * 179.97438 * 6 5 3 27 27 H 1.08995 * 109.47078 * 60.00661 * 13 11 2 28 28 H 1.08997 * 109.47028 * 299.99957 * 13 11 2 29 29 H 1.09006 * 109.46907 * 60.00024 * 14 13 11 30 30 H 1.08993 * 109.47495 * 300.00318 * 14 13 11 31 31 H 1.08996 * 109.47211 * 60.00161 * 15 14 13 32 32 H 1.09007 * 109.47422 * 299.99973 * 15 14 13 33 33 H 1.08004 * 119.98782 * 0.02562 * 17 16 15 34 34 H 1.08001 * 119.98428 * 180.02562 * 18 17 16 35 35 H 1.08000 * 119.99316 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.00398 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1582 1.2292 -0.3863 5 6 1.5488 2.3370 0.4970 6 7 0.4346 2.2490 1.1882 7 14 2.3236 4.0073 0.1827 8 1 2.4039 4.2483 -1.2804 9 1 1.4938 5.0646 0.8142 10 1 3.6894 4.0369 0.7649 11 6 2.1390 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 6 2.3798 -3.6352 -0.0018 15 6 1.6148 -4.9602 -0.0025 16 6 2.5941 -6.1056 -0.0031 17 6 2.8855 -6.7668 1.1755 18 6 3.7833 -7.8177 1.1749 19 6 4.3912 -8.2078 -0.0041 20 6 4.1010 -7.5474 -1.1828 21 6 3.1975 -6.4993 -1.1841 22 17 2.8263 -5.6745 -2.6658 23 1 -0.3632 -0.0742 1.0250 24 1 -0.3633 0.9247 -0.4483 25 1 -0.3633 -0.8506 -0.5767 26 1 0.0147 3.0516 1.5355 27 1 0.7586 -2.5299 -0.8903 28 1 0.7592 -2.5302 0.8897 29 1 3.0071 -3.5778 0.8878 30 1 3.0058 -3.5770 -0.8921 31 1 0.9878 -5.0173 -0.8922 32 1 0.9885 -5.0186 0.8878 33 1 2.4109 -6.4625 2.0967 34 1 4.0103 -8.3341 2.0959 35 1 5.0929 -9.0287 -0.0038 36 1 4.5756 -7.8525 -2.1037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291490583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:21 Heat of formation + Delta-G solvation = -27.611934 kcal Electronic energy + Delta-G solvation = -19026.713097 eV Core-core repulsion = 15922.317431 eV Total energy + Delta-G solvation = -3104.395666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.58749 -38.38962 -36.42539 -35.03629 -34.27397 -31.66992 -30.98956 -30.70185 -27.15297 -25.97626 -24.29462 -22.81509 -22.33592 -20.78845 -18.62021 -17.13361 -16.78044 -15.98124 -15.84505 -15.41196 -14.86358 -14.44682 -14.13422 -13.91965 -13.74181 -13.38347 -13.29134 -12.34677 -12.11451 -12.06943 -11.66539 -11.52608 -11.44693 -11.33450 -11.15174 -11.07841 -11.03476 -10.80059 -10.51719 -10.35903 -10.26381 -10.11273 -9.00487 -8.94607 -8.70590 -8.28444 -7.58572 -6.26655 -3.82457 1.04963 1.14968 2.14350 3.22549 3.27221 3.31672 3.50567 3.99810 4.19281 4.58929 4.65845 4.80279 4.98777 5.11155 5.17593 5.22822 5.40618 5.45234 5.55949 5.67588 5.83257 5.88524 6.02296 6.08538 6.12785 6.20875 6.24717 6.33420 6.49056 6.65684 6.67982 6.80248 6.91112 7.24236 7.61912 8.21842 8.56395 9.26304 9.50630 10.08074 10.78572 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032090 B = 0.003409 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.349014 B = 8212.068317 C = 8369.827491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.306 4.306 4 H 0.096 0.904 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.925 3.075 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.447 3.553 12 O -0.590 6.590 13 C -0.128 4.128 14 C -0.092 4.092 15 C -0.088 4.088 16 C -0.062 4.062 17 C -0.107 4.107 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.034 4.034 22 Cl -0.064 7.064 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.025 0.975 26 H 0.267 0.733 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 -19.110 -2.201 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.170 5.170 3 C -0.434 4.434 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.752 3.248 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.236 3.764 12 O -0.475 6.475 13 C -0.168 4.168 14 C -0.130 4.130 15 C -0.125 4.125 16 C -0.063 4.063 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.137 4.137 20 C -0.129 4.129 21 C -0.061 4.061 22 Cl -0.035 7.035 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.605 -18.862 -2.244 19.004 hybrid contribution 0.101 0.982 -0.138 0.997 sum 0.706 -17.880 -2.382 18.052 Atomic orbital electron populations 1.21448 0.81379 0.99788 1.00449 1.43594 1.05395 1.04843 1.63167 1.19599 1.00539 0.84371 1.38901 0.88639 1.25325 0.96676 1.00052 0.95275 1.69988 1.19323 1.29577 1.33564 0.86016 0.79039 0.81083 0.78659 1.19973 1.20996 1.19829 1.20151 0.88098 0.84991 0.83194 1.90505 1.14129 1.87293 1.55612 1.21521 0.98791 0.93992 1.02534 1.21228 0.97531 0.90498 1.03755 1.20783 0.96217 0.92175 1.03307 1.19899 0.97795 0.97021 0.91590 1.21091 0.98377 0.95705 0.97341 1.21231 0.96678 0.97133 0.98291 1.21061 1.00331 1.00184 0.92144 1.21041 0.97411 0.95192 0.99288 1.20878 1.00501 0.96866 0.87821 1.98379 1.93593 1.78104 1.33463 0.93145 0.90885 0.95613 0.92320 0.90666 0.90466 0.91442 0.91024 0.90393 0.90643 0.85055 0.85573 0.85409 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.57 8.44 59.85 0.51 3.08 16 2 N -0.45 -11.89 3.01 -122.19 -0.37 -12.26 16 3 C -0.31 -8.80 9.24 -14.93 -0.14 -8.93 16 4 H 0.10 2.87 7.45 -52.49 -0.39 2.48 16 5 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 6 N -0.88 -24.10 10.83 55.50 0.60 -23.49 16 7 Si 0.93 21.22 29.57 -169.99 -5.03 16.19 16 8 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 C 0.45 11.19 7.63 -10.98 -0.08 11.11 16 12 O -0.59 -16.85 15.70 5.55 0.09 -16.76 16 13 C -0.13 -2.36 4.31 -27.88 -0.12 -2.48 16 14 C -0.09 -1.55 4.44 -26.73 -0.12 -1.67 16 15 C -0.09 -1.13 4.80 -27.89 -0.13 -1.27 16 16 C -0.06 -0.78 5.14 -104.58 -0.54 -1.32 16 17 C -0.11 -1.16 9.67 -39.59 -0.38 -1.54 16 18 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 19 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 20 C -0.11 -1.18 9.83 -39.55 -0.39 -1.57 16 21 C -0.03 -0.43 6.31 -39.49 -0.25 -0.68 16 22 Cl -0.06 -0.84 26.65 -51.86 -1.38 -2.22 16 23 H 0.05 1.17 7.83 -51.93 -0.41 0.76 16 24 H 0.07 1.75 6.80 -51.93 -0.35 1.40 16 25 H 0.03 0.48 6.61 -51.93 -0.34 0.14 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 27 H 0.07 1.25 7.41 -51.93 -0.38 0.87 16 28 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 29 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.07 1.32 7.25 -51.93 -0.38 0.94 16 31 H 0.08 0.97 7.34 -51.93 -0.38 0.59 16 32 H 0.07 0.85 8.00 -51.93 -0.42 0.44 16 33 H 0.13 1.21 8.04 -52.48 -0.42 0.79 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 317.45 15.07 4.78 4.78 Total: -1.00 -32.16 317.45 -8.55 -40.71 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.72 Total: 0.59 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.53 Total: -7.54 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.23 Total: -35.76 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.09 Total: -16.76 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.38 Total: -2.22 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.16 -8.55 -40.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291490583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.100 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds