Wall clock time and date at job start Tue Mar 31 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40074 * 125.97634 * 2 1 4 4 C 1.31212 * 108.17080 * 180.13527 * 3 2 1 5 5 N 1.40158 * 125.97585 * 179.88795 * 4 3 2 6 6 C 1.34777 * 120.00060 * 179.41177 * 5 4 3 7 7 O 1.21293 * 120.00229 * 0.28031 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27594 * 6 5 4 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00011 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46850 * 90.00589 * 14 12 10 16 16 H 1.48498 * 109.47329 * 210.00016 * 14 12 10 17 17 H 1.48499 * 109.47220 * 330.01003 * 14 12 10 18 18 C 1.40415 * 108.05338 * 359.62188 * 4 3 2 19 19 C 1.34969 * 125.97611 * 179.71412 * 2 1 3 20 20 C 1.50698 * 126.07029 * 359.97438 * 19 2 1 21 21 C 1.53004 * 117.50189 * 213.75539 * 20 19 2 22 22 C 1.52999 * 117.50108 * 145.09199 * 20 19 2 23 23 H 1.08996 * 109.46876 * 270.28874 * 1 2 3 24 24 H 1.09000 * 109.46872 * 30.29432 * 1 2 3 25 25 H 1.09003 * 109.46603 * 150.28856 * 1 2 3 26 26 H 0.97001 * 120.00153 * 359.69490 * 5 4 3 27 27 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 28 28 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 29 29 H 0.96991 * 119.99795 * 179.97438 * 13 12 10 30 30 H 1.07997 * 126.06700 * 180.27209 * 18 4 3 31 31 H 1.09007 * 115.54736 * 359.41856 * 20 19 2 32 32 H 1.09004 * 117.49351 * 359.97438 * 21 20 19 33 33 H 1.08996 * 117.49993 * 145.01979 * 21 20 19 34 34 H 1.09000 * 117.50003 * 214.98015 * 22 20 19 35 35 H 1.08997 * 117.49666 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2879 1.1336 0.0000 4 6 3.5372 0.7323 -0.0029 5 7 4.6679 1.5605 -0.0062 6 6 5.9012 1.0171 0.0030 7 8 6.0327 -0.1887 0.0089 8 6 7.1171 1.9075 0.0058 9 16 8.6121 0.8874 0.0177 10 6 9.8428 2.1483 0.0183 11 1 9.5508 3.1880 0.0128 12 6 11.1878 1.8053 0.0271 13 7 11.5438 0.5380 0.0344 14 14 12.4926 3.1420 0.0270 15 1 12.8312 3.5032 1.4271 16 1 13.7096 2.6458 -0.6642 17 1 11.9743 4.3397 -0.6816 18 6 3.5433 -0.6718 0.0039 19 6 2.2579 -1.0922 0.0054 20 6 1.7934 -2.5258 0.0131 21 6 2.6493 -3.5418 0.7723 22 6 2.6340 -3.5450 -0.7584 23 1 -0.3633 0.0052 1.0276 24 1 -0.3633 0.8873 -0.5184 25 1 -0.3633 -0.8926 -0.5094 26 1 4.5629 2.5248 -0.0108 27 1 7.1114 2.5329 -0.8869 28 1 7.1016 2.5406 0.8930 29 1 12.4836 0.2984 0.0401 30 1 4.4190 -1.3038 0.0077 31 1 0.7129 -2.6698 0.0243 32 1 3.5486 -3.1732 1.2658 33 1 2.1320 -4.3544 1.2824 34 1 2.1068 -4.3598 -1.2547 35 1 3.5229 -3.1786 -1.2720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291592803.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:48 Heat of formation + Delta-G solvation = 74.502200 kcal Electronic energy + Delta-G solvation = -18772.870542 eV Core-core repulsion = 15707.239334 eV Total energy + Delta-G solvation = -3065.631208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.42979 -39.21118 -37.17887 -34.78048 -32.45511 -32.43437 -29.81268 -29.34240 -26.15661 -25.47116 -23.74761 -22.52779 -21.64596 -20.19071 -19.44443 -17.75455 -17.38445 -16.28868 -15.98384 -15.74004 -15.05924 -14.94717 -14.81675 -14.23910 -14.07028 -13.63127 -13.34022 -13.11218 -12.61952 -12.59056 -12.16920 -11.91400 -11.69055 -11.29592 -11.07337 -11.04186 -10.89424 -10.78730 -10.45932 -10.34165 -9.85504 -9.44592 -9.08203 -8.52221 -8.29082 -8.10885 -6.53347 -6.23748 -3.94851 1.72592 2.18152 2.54232 3.02263 3.22158 3.27575 3.31432 3.35051 3.60451 3.80661 4.17953 4.29874 4.47862 4.68954 4.75412 4.80823 4.98074 5.03039 5.11851 5.20343 5.43315 5.49585 5.51039 5.57850 5.78032 5.81079 5.88443 6.01058 6.02045 6.07585 6.36183 6.93881 7.06698 7.27077 7.58355 7.95579 8.33446 8.41573 9.21869 10.83680 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033116 B = 0.003357 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.308508 B = 8337.800595 C = 9094.407443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.373 5.373 3 N -0.332 5.332 4 C 0.311 3.689 5 N -0.642 5.642 6 C 0.540 3.460 7 O -0.490 6.490 8 C -0.151 4.151 9 S -0.054 6.054 10 C -0.537 4.537 11 H 0.074 0.926 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.263 4.263 19 C 0.122 3.878 20 C -0.108 4.108 21 C -0.159 4.159 22 C -0.159 4.159 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.414 0.586 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.269 0.731 30 H 0.174 0.826 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.804 -3.398 -0.144 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.157 5.157 3 N -0.162 5.162 4 C 0.056 3.944 5 N -0.292 5.292 6 C 0.327 3.673 7 O -0.361 6.361 8 C -0.302 4.302 9 S 0.173 5.827 10 C -0.685 4.685 11 H 0.092 0.908 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.746 3.254 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.293 4.293 19 C -0.005 4.005 20 C -0.128 4.128 21 C -0.196 4.196 22 C -0.197 4.197 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.249 0.751 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.191 0.809 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.275 -4.516 -0.141 22.728 hybrid contribution 0.980 2.234 0.016 2.440 sum -21.295 -2.282 -0.125 21.417 Atomic orbital electron populations 1.21747 0.74480 1.04124 1.03017 1.47822 1.05748 1.02438 1.59662 1.77325 0.99386 1.06935 1.32538 1.19144 0.86726 0.90617 0.97942 1.42922 1.02668 1.09699 1.73930 1.20510 0.82673 0.89386 0.74759 1.90625 1.85224 1.14772 1.45480 1.23531 0.97949 1.03097 1.05583 1.85394 0.91304 1.09251 1.96760 1.22869 0.92602 0.93910 1.59130 0.90778 1.24991 0.97864 0.96218 0.94451 1.70010 1.17604 1.15886 1.46749 0.86155 0.80076 0.80823 0.78380 1.20249 1.20748 1.19652 1.21569 0.97091 0.93352 1.17271 1.20155 0.90440 0.88675 1.01192 1.20393 0.97899 0.85612 1.08867 1.23113 1.01920 0.99731 0.94858 1.23113 1.02080 0.99717 0.94787 0.91103 0.89472 0.89732 0.75083 0.88576 0.88582 0.92133 0.80890 0.86879 0.87569 0.88115 0.88128 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.83 11.21 59.85 0.67 1.50 16 2 N -0.37 -4.83 4.01 -63.90 -0.26 -5.09 16 3 N -0.33 -5.18 12.59 31.44 0.40 -4.79 16 4 C 0.31 5.20 8.11 -154.39 -1.25 3.95 16 5 N -0.64 -10.13 5.45 -11.13 -0.06 -10.19 16 6 C 0.54 10.21 7.82 -10.98 -0.09 10.12 16 7 O -0.49 -10.73 12.99 5.55 0.07 -10.66 16 8 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 9 S -0.05 -1.42 20.57 -107.50 -2.21 -3.63 16 10 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 14 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C -0.26 -4.31 8.60 -39.83 -0.34 -4.65 16 19 C 0.12 1.63 6.61 -82.28 -0.54 1.09 16 20 C -0.11 -1.04 5.96 -91.77 -0.55 -1.59 16 21 C -0.16 -1.47 10.05 -26.69 -0.27 -1.74 16 22 C -0.16 -1.47 10.05 -26.69 -0.27 -1.74 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.44 7.22 -51.93 -0.38 0.06 16 26 H 0.41 5.22 8.82 -40.82 -0.36 4.86 16 27 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 28 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.17 3.12 5.92 -52.49 -0.31 2.81 16 31 H 0.11 0.80 7.24 -51.92 -0.38 0.42 16 32 H 0.11 1.17 7.93 -51.93 -0.41 0.76 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.11 1.16 7.96 -51.93 -0.41 0.75 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -34.78 319.32 -8.08 -42.86 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.33 Total: 4.15 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.22 Total: -8.58 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.81 Total: -45.15 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.63 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.78 -8.08 -42.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291592803.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.365 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds