Wall clock time and date at job start Tue Mar 31 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35926 * 117.00193 * 2 1 4 4 C 1.38519 * 120.14863 * 0.02562 * 3 2 1 5 5 C 1.38586 * 120.32631 * 179.97438 * 4 3 2 6 6 C 1.37920 * 119.91611 * 359.86855 * 5 4 3 7 7 C 1.38738 * 119.82071 * 0.20439 * 6 5 4 8 8 C 1.38048 * 120.44681 * 359.87190 * 7 6 5 9 9 Cl 1.73607 * 120.10586 * 179.97438 * 8 7 6 10 10 C 1.50637 * 121.82419 * 180.28704 * 6 5 4 11 11 N 1.46629 * 110.48514 * 342.46880 * 10 6 5 12 12 C 1.46896 * 111.00185 * 289.18896 * 11 10 6 13 13 C 1.50696 * 109.47452 * 292.96838 * 12 11 10 14 14 H 1.07999 * 119.99822 * 0.02562 * 13 12 11 15 15 C 1.37884 * 120.00126 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99707 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99956 * 0.27447 * 15 13 12 18 18 H 1.48503 * 109.47407 * 269.72718 * 17 15 13 19 19 H 1.48505 * 109.47281 * 29.72474 * 17 15 13 20 20 H 1.48501 * 109.47274 * 149.72572 * 17 15 13 21 21 C 1.47165 * 110.23144 * 52.60154 * 11 10 6 22 22 C 1.50730 * 118.42900 * 179.82113 * 5 4 3 23 23 H 1.09000 * 109.47339 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46976 * 300.00377 * 1 2 3 25 25 H 1.08999 * 109.46833 * 60.00014 * 1 2 3 26 26 H 1.07995 * 119.83643 * 359.96798 * 4 3 2 27 27 H 1.08003 * 119.77580 * 179.85446 * 7 6 5 28 28 H 1.09001 * 109.29655 * 222.16640 * 10 6 5 29 29 H 1.09000 * 109.31075 * 102.78957 * 10 6 5 30 30 H 1.08996 * 109.47227 * 172.96480 * 12 11 10 31 31 H 1.09004 * 109.46764 * 52.97255 * 12 11 10 32 32 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 33 33 H 1.08992 * 109.63603 * 48.38432 * 21 11 10 34 34 H 1.09002 * 109.62867 * 168.97098 * 21 11 10 35 35 H 1.09002 * 109.38715 * 43.12220 * 22 5 4 36 36 H 1.09005 * 109.30248 * 283.38067 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2948 2.3748 0.0005 5 6 1.9201 3.6115 0.0011 6 6 3.2973 3.6859 0.0038 7 6 4.0512 2.5212 0.0017 8 6 3.4322 1.2873 -0.0004 9 17 4.3842 -0.1645 -0.0037 10 6 4.0215 5.0068 0.0109 11 7 3.1204 6.0882 -0.3996 12 6 2.8063 5.9967 -1.8317 13 6 4.0502 6.2697 -2.6373 14 1 4.9812 6.4889 -2.1356 15 6 4.0001 6.2386 -4.0149 16 7 5.0859 6.4764 -4.7179 17 14 2.3886 5.8657 -4.8827 18 1 2.2701 4.4013 -5.0989 19 1 1.2554 6.3357 -4.0459 20 1 2.3589 6.5635 -6.1932 21 6 1.8931 6.0638 0.4121 22 6 1.0611 4.8500 -0.0025 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.2163 2.3180 0.0004 27 1 5.1296 2.5803 0.0015 28 1 4.8645 4.9591 -0.6784 29 1 4.3927 5.2090 1.0156 30 1 2.0417 6.7314 -2.0837 31 1 2.4380 4.9964 -2.0596 32 1 5.0507 6.4542 -5.6870 33 1 2.1536 5.9860 1.4676 34 1 1.3216 6.9758 0.2394 35 1 0.2362 4.7203 0.6982 36 1 0.6628 5.0094 -1.0046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293133683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:48 Heat of formation + Delta-G solvation = -12.436552 kcal Electronic energy + Delta-G solvation = -20126.994511 eV Core-core repulsion = 17023.256899 eV Total energy + Delta-G solvation = -3103.737612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.53379 -38.83467 -36.67946 -35.74184 -32.86651 -32.20736 -30.42362 -29.10973 -27.88941 -27.25458 -23.98333 -23.17494 -22.07001 -21.62859 -18.94150 -17.69934 -17.00015 -16.57762 -15.87724 -15.63285 -14.64467 -14.55043 -14.42299 -14.10883 -13.95814 -13.66897 -13.37089 -12.88713 -12.40365 -12.23441 -12.09755 -12.02149 -11.54446 -11.49067 -11.41354 -11.19308 -10.76142 -10.62348 -10.59357 -10.29102 -10.25506 -9.84775 -9.28962 -8.60651 -8.59087 -7.86352 -7.52509 -6.06557 -4.03380 1.25892 1.44784 2.31619 3.17210 3.26832 3.34185 3.34583 3.68963 4.40525 4.66771 4.74539 4.84004 4.96983 5.01591 5.19053 5.20762 5.27869 5.35467 5.41383 5.51834 5.60584 5.66697 5.91365 6.00381 6.07689 6.14418 6.23705 6.30207 6.42431 6.68710 6.78676 6.90937 6.94708 7.27096 7.56044 7.82555 7.95451 8.62261 9.01260 9.55441 11.06579 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.005946 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.392720 B = 4708.087522 C = 4943.387386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.125 3.875 4 C -0.200 4.200 5 C -0.031 4.031 6 C -0.113 4.113 7 C -0.066 4.066 8 C -0.068 4.068 9 Cl -0.068 7.068 10 C 0.097 3.903 11 N -0.514 5.514 12 C 0.157 3.843 13 C -0.509 4.509 14 H 0.081 0.919 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.871 3.129 18 H -0.278 1.278 19 H -0.267 1.267 20 H -0.285 1.285 21 C 0.050 3.950 22 C -0.121 4.121 23 H 0.099 0.901 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.131 0.869 27 H 0.141 0.859 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.028 0.972 31 H -0.007 1.007 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.217 -10.235 11.796 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.080 3.920 4 C -0.218 4.218 5 C -0.031 4.031 6 C -0.115 4.115 7 C -0.085 4.085 8 C -0.095 4.095 9 Cl -0.039 7.039 10 C -0.031 4.031 11 N -0.235 5.235 12 C 0.030 3.970 13 C -0.547 4.547 14 H 0.099 0.901 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.698 3.302 18 H -0.204 1.204 19 H -0.192 1.192 20 H -0.211 1.211 21 C -0.079 4.079 22 C -0.159 4.159 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.149 0.851 27 H 0.158 0.842 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.738 -10.047 11.673 17.707 hybrid contribution -1.512 -1.156 -0.909 2.109 sum -10.250 -11.202 10.764 18.612 Atomic orbital electron populations 1.23048 0.78536 1.03798 1.01372 1.86125 1.21162 1.26125 1.88802 1.18492 0.90437 0.84827 0.98288 1.21043 0.99749 0.91204 1.09848 1.19464 0.93376 0.94238 0.96051 1.20523 0.93257 0.97123 1.00645 1.20894 1.00710 0.89127 0.97785 1.20058 0.88469 0.88505 1.12494 1.98337 1.71569 1.36756 1.97244 1.21133 0.96679 0.83934 1.01385 1.62604 1.12419 1.42368 1.06077 1.20259 0.98032 0.94915 0.83753 1.21009 0.95671 1.47490 0.90553 0.90076 1.24862 0.95922 0.94920 0.97393 1.69886 1.27624 1.49874 1.06384 0.86930 0.85048 0.78737 0.79478 1.20361 1.19224 1.21111 1.22245 0.91635 0.96048 0.97965 1.21205 0.98045 0.93759 1.02902 0.88268 0.92714 0.92624 0.85112 0.84170 0.87719 0.90593 0.95449 0.98973 0.92665 0.91235 0.90430 0.90746 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.29 9.97 -19.51 -0.19 -4.48 16 3 C 0.13 1.93 6.68 -39.26 -0.26 1.67 16 4 C -0.20 -2.92 8.66 -39.35 -0.34 -3.26 16 5 C -0.03 -0.50 5.05 -104.59 -0.53 -1.02 16 6 C -0.11 -1.95 5.19 -104.58 -0.54 -2.49 16 7 C -0.07 -1.07 9.42 -39.47 -0.37 -1.45 16 8 C -0.07 -1.09 6.33 -39.44 -0.25 -1.34 16 9 Cl -0.07 -1.01 28.52 -51.86 -1.48 -2.49 16 10 C 0.10 1.76 5.41 -5.15 -0.03 1.74 16 11 N -0.51 -10.18 5.01 -237.64 -1.19 -11.37 16 12 C 0.16 3.66 2.75 -4.98 -0.01 3.64 16 13 C -0.51 -14.12 8.92 -34.44 -0.31 -14.42 16 14 H 0.08 2.43 7.49 -52.49 -0.39 2.04 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 17 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 C 0.05 0.78 6.02 -3.74 -0.02 0.76 16 22 C -0.12 -1.78 5.16 -27.93 -0.14 -1.92 16 23 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 25 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.13 1.56 6.29 -52.49 -0.33 1.23 16 27 H 0.14 2.07 8.06 -52.48 -0.42 1.64 16 28 H 0.10 2.14 6.68 -51.93 -0.35 1.79 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.03 0.65 7.12 -51.93 -0.37 0.28 16 31 H -0.01 -0.18 5.34 -51.93 -0.28 -0.45 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 33 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.33 7.06 -51.93 -0.37 0.97 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -31.08 302.85 -8.69 -39.77 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.58 Total: -1.34 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -1.92 Total: -14.92 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.42 Total: -37.91 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.19 Total: -4.48 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.48 Total: -2.49 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.08 -8.69 -39.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293133683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.336 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds