Wall clock time and date at job start Tue Mar 31 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46973 * 2 1 4 4 C 1.37099 * 119.99918 * 264.76728 * 3 2 1 5 5 H 1.07996 * 119.99863 * 138.85182 * 4 3 2 6 6 C 1.38948 * 119.99949 * 318.85368 * 4 3 2 7 7 N 1.31414 * 120.00139 * 341.83729 * 6 4 3 8 8 Si 1.86808 * 119.99821 * 161.83284 * 6 4 3 9 9 H 1.48501 * 109.46877 * 60.00330 * 8 6 4 10 10 H 1.48495 * 109.47021 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47036 * 300.00101 * 8 6 4 12 12 C 1.34773 * 119.99915 * 84.77441 * 3 2 1 13 13 O 1.21290 * 120.00106 * 179.97438 * 12 3 2 14 14 C 1.50706 * 120.00260 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.47212 * 180.02562 * 14 12 3 16 16 C 1.50693 * 109.47031 * 179.97438 * 15 14 12 17 17 C 1.38242 * 119.99004 * 270.29883 * 16 15 14 18 18 C 1.38217 * 120.01586 * 180.25286 * 17 16 15 19 19 C 1.38349 * 119.98509 * 359.47260 * 18 17 16 20 20 Cl 1.73605 * 120.01298 * 180.27550 * 19 18 17 21 21 C 1.38356 * 119.97178 * 0.24994 * 19 18 17 22 22 C 1.38214 * 119.98830 * 0.02562 * 21 19 18 23 23 H 1.08999 * 109.47286 * 299.99913 * 1 2 3 24 24 H 1.08998 * 109.47137 * 59.99797 * 1 2 3 25 25 H 1.09001 * 109.47243 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46932 * 239.99725 * 2 1 3 27 27 H 1.08998 * 109.47137 * 120.00203 * 2 1 3 28 28 H 0.97001 * 119.99787 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46612 * 59.99818 * 14 12 3 30 30 H 1.09003 * 109.46769 * 300.00491 * 14 12 3 31 31 H 1.09002 * 109.46780 * 60.00125 * 15 14 12 32 32 H 1.08991 * 109.47112 * 300.00067 * 15 14 12 33 33 H 1.07999 * 119.99269 * 0.02562 * 17 16 15 34 34 H 1.08005 * 120.00892 * 179.74716 * 18 17 16 35 35 H 1.08007 * 120.00044 * 180.02562 * 21 19 18 36 36 H 1.07998 * 119.99194 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9914 -1.1824 5 1 2.0743 3.0218 -1.3535 6 6 3.0372 1.2842 -2.1605 7 7 3.6791 0.1817 -1.8451 8 14 3.0501 1.9005 -3.9239 9 1 3.6538 3.2565 -3.9699 10 1 3.8492 0.9746 -4.7660 11 1 1.6579 1.9607 -4.4374 12 6 2.1427 2.0520 1.1623 13 8 2.5474 3.1954 1.1624 14 6 1.7790 1.3814 2.4620 15 6 2.0100 2.3542 3.6200 16 6 1.6457 1.6839 4.9195 17 6 0.3531 1.7691 5.4024 18 6 0.0196 1.1588 6.5969 19 6 0.9770 0.4534 7.3038 20 17 0.5571 -0.3194 8.8006 21 6 2.2690 0.3637 6.8172 22 6 2.6027 0.9791 5.6255 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.1599 -0.3118 -2.5279 29 1 2.4004 0.4967 2.6007 30 1 0.7294 1.0881 2.4382 31 1 1.3882 3.2387 3.4810 32 1 3.0593 2.6479 3.6440 33 1 -0.3954 2.3157 4.8480 34 1 -0.9893 1.2289 6.9760 35 1 3.0167 -0.1873 7.3686 36 1 3.6113 0.9095 5.2458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299306113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:25 Heat of formation + Delta-G solvation = -29.726782 kcal Electronic energy + Delta-G solvation = -19187.629180 eV Core-core repulsion = 16083.141806 eV Total energy + Delta-G solvation = -3104.487373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.55867 -38.48051 -36.63776 -35.04839 -33.49243 -32.00376 -31.13016 -29.45739 -29.23979 -25.52327 -23.72259 -22.89590 -22.20457 -20.96937 -18.67335 -17.20128 -16.74734 -15.98329 -15.75793 -15.14329 -14.90238 -14.28665 -14.23132 -13.61484 -13.57251 -13.45886 -13.00159 -12.81560 -12.52259 -12.06989 -11.76107 -11.71504 -11.45380 -11.19256 -11.14907 -11.01006 -10.93709 -10.86847 -10.66032 -10.35727 -10.27114 -10.06829 -9.11400 -8.90581 -8.66214 -8.30292 -7.40761 -6.30960 -3.99522 1.08472 1.22295 2.02137 3.20250 3.25533 3.28883 3.56043 3.94817 4.17409 4.70345 4.73005 4.79978 5.00645 5.11556 5.26113 5.29567 5.54092 5.58672 5.66976 5.83413 5.85335 5.87890 6.09622 6.14031 6.18032 6.21285 6.27638 6.39691 6.50893 6.55198 6.68823 6.77639 6.87761 7.22402 7.59223 8.31410 8.53521 9.21533 9.42210 10.04527 10.74234 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.038110 B = 0.003253 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.532706 B = 8605.637797 C = 8750.263183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.442 5.442 4 C -0.310 4.310 5 H 0.087 0.913 6 C 0.039 3.961 7 N -0.873 5.873 8 Si 0.918 3.082 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.461 3.539 13 O -0.583 6.583 14 C -0.128 4.128 15 C -0.066 4.066 16 C -0.064 4.064 17 C -0.106 4.106 18 C -0.109 4.109 19 C -0.045 4.045 20 Cl -0.082 7.082 21 C -0.109 4.109 22 C -0.105 4.105 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.267 0.733 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 -3.377 14.696 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.162 5.162 4 C -0.438 4.438 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.510 5.510 8 Si 0.744 3.256 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.249 3.751 13 O -0.467 6.467 14 C -0.169 4.169 15 C -0.104 4.104 16 C -0.064 4.064 17 C -0.124 4.124 18 C -0.128 4.128 19 C -0.072 4.072 20 Cl -0.053 7.053 21 C -0.127 4.127 22 C -0.123 4.123 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.120 0.880 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.922 -3.040 14.703 16.139 hybrid contribution -0.013 -0.119 -0.711 0.721 sum -5.935 -3.159 13.991 15.523 Atomic orbital electron populations 1.22224 0.98289 1.00331 1.01491 1.21446 0.91558 0.85687 1.03406 1.43451 1.56109 1.11712 1.04890 1.19330 1.34889 0.98503 0.91104 0.89561 1.25416 0.94063 0.96559 1.00521 1.69918 1.29487 1.17577 1.34054 0.86149 0.78349 0.78851 0.82237 1.19743 1.20997 1.19906 1.20366 0.81881 0.87882 0.84922 1.90514 1.50313 1.18862 1.86961 1.21625 1.02452 0.99167 0.93608 1.20382 1.03462 0.97645 0.88875 1.20263 0.93294 0.96265 0.96568 1.21090 0.96404 0.99647 0.95300 1.21020 0.98983 0.97641 0.95155 1.20887 0.95408 1.01094 0.89795 1.98355 1.93715 1.80222 1.33018 1.21036 0.94651 1.00339 0.96706 1.21121 1.00133 0.96991 0.94087 0.93858 0.92454 0.93143 0.87955 0.93359 0.92257 0.90126 0.90377 0.90236 0.90099 0.84997 0.85194 0.85150 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.15 37.16 0.38 -2.53 16 2 C 0.10 2.20 5.41 -4.04 -0.02 2.18 16 3 N -0.44 -11.05 2.50 -114.81 -0.29 -11.34 16 4 C -0.31 -8.57 8.84 -14.93 -0.13 -8.70 16 5 H 0.09 2.48 7.82 -52.49 -0.41 2.07 16 6 C 0.04 1.02 4.95 -17.47 -0.09 0.94 16 7 N -0.87 -23.52 11.61 55.50 0.64 -22.88 16 8 Si 0.92 20.57 29.59 -169.99 -5.03 15.54 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.46 11.00 7.59 -10.98 -0.08 10.92 16 13 O -0.58 -15.94 15.89 5.55 0.09 -15.85 16 14 C -0.13 -2.26 4.29 -27.88 -0.12 -2.38 16 15 C -0.07 -1.03 4.63 -27.89 -0.13 -1.16 16 16 C -0.06 -0.83 5.13 -104.62 -0.54 -1.36 16 17 C -0.11 -1.24 9.70 -39.59 -0.38 -1.63 16 18 C -0.11 -1.19 9.83 -39.55 -0.39 -1.58 16 19 C -0.05 -0.51 6.32 -39.50 -0.25 -0.76 16 20 Cl -0.08 -0.84 28.96 -51.86 -1.50 -2.35 16 21 C -0.11 -1.21 9.83 -39.55 -0.39 -1.60 16 22 C -0.11 -1.26 9.70 -39.59 -0.38 -1.65 16 23 H 0.04 0.71 6.60 -51.93 -0.34 0.36 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.10 2.42 5.76 -51.93 -0.30 2.12 16 27 H 0.05 0.94 6.66 -51.93 -0.35 0.59 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.08 1.37 7.41 -51.93 -0.38 0.98 16 30 H 0.08 1.25 6.54 -51.93 -0.34 0.91 16 31 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 32 H 0.08 1.33 8.04 -51.93 -0.42 0.92 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -30.36 319.94 -8.42 -38.78 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.63 Total: 2.58 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.53 Total: -9.31 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.36 Total: -34.22 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.09 Total: -15.85 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.36 -8.42 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299306113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.053 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds