Wall clock time and date at job start Tue Mar 31 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46973 * 2 1 4 4 C 1.37099 * 119.99918 * 264.76728 * 3 2 1 5 5 H 1.07996 * 119.99863 * 138.85182 * 4 3 2 6 6 C 1.38948 * 119.99949 * 318.85368 * 4 3 2 7 7 N 1.31414 * 120.00139 * 341.83729 * 6 4 3 8 8 Si 1.86808 * 119.99821 * 161.83284 * 6 4 3 9 9 H 1.48501 * 109.46877 * 60.00330 * 8 6 4 10 10 H 1.48495 * 109.47021 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47036 * 300.00101 * 8 6 4 12 12 C 1.34773 * 119.99915 * 84.77441 * 3 2 1 13 13 O 1.21290 * 120.00106 * 179.97438 * 12 3 2 14 14 C 1.50706 * 120.00260 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.47212 * 180.02562 * 14 12 3 16 16 C 1.50693 * 109.47031 * 179.97438 * 15 14 12 17 17 C 1.38242 * 119.99004 * 270.29883 * 16 15 14 18 18 C 1.38217 * 120.01586 * 180.25286 * 17 16 15 19 19 C 1.38349 * 119.98509 * 359.47260 * 18 17 16 20 20 Cl 1.73605 * 120.01298 * 180.27550 * 19 18 17 21 21 C 1.38356 * 119.97178 * 0.24994 * 19 18 17 22 22 C 1.38214 * 119.98830 * 0.02562 * 21 19 18 23 23 H 1.08999 * 109.47286 * 299.99913 * 1 2 3 24 24 H 1.08998 * 109.47137 * 59.99797 * 1 2 3 25 25 H 1.09001 * 109.47243 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46932 * 239.99725 * 2 1 3 27 27 H 1.08998 * 109.47137 * 120.00203 * 2 1 3 28 28 H 0.97001 * 119.99787 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46612 * 59.99818 * 14 12 3 30 30 H 1.09003 * 109.46769 * 300.00491 * 14 12 3 31 31 H 1.09002 * 109.46780 * 60.00125 * 15 14 12 32 32 H 1.08991 * 109.47112 * 300.00067 * 15 14 12 33 33 H 1.07999 * 119.99269 * 0.02562 * 17 16 15 34 34 H 1.08005 * 120.00892 * 179.74716 * 18 17 16 35 35 H 1.08007 * 120.00044 * 180.02562 * 21 19 18 36 36 H 1.07998 * 119.99194 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9914 -1.1824 5 1 2.0743 3.0218 -1.3535 6 6 3.0372 1.2842 -2.1605 7 7 3.6791 0.1817 -1.8451 8 14 3.0501 1.9005 -3.9239 9 1 3.6538 3.2565 -3.9699 10 1 3.8492 0.9746 -4.7660 11 1 1.6579 1.9607 -4.4374 12 6 2.1427 2.0520 1.1623 13 8 2.5474 3.1954 1.1624 14 6 1.7790 1.3814 2.4620 15 6 2.0100 2.3542 3.6200 16 6 1.6457 1.6839 4.9195 17 6 0.3531 1.7691 5.4024 18 6 0.0196 1.1588 6.5969 19 6 0.9770 0.4534 7.3038 20 17 0.5571 -0.3194 8.8006 21 6 2.2690 0.3637 6.8172 22 6 2.6027 0.9791 5.6255 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 4.1599 -0.3118 -2.5279 29 1 2.4004 0.4967 2.6007 30 1 0.7294 1.0881 2.4382 31 1 1.3882 3.2387 3.4810 32 1 3.0593 2.6479 3.6440 33 1 -0.3954 2.3157 4.8480 34 1 -0.9893 1.2289 6.9760 35 1 3.0167 -0.1873 7.3686 36 1 3.6113 0.9095 5.2458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299306113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:25 Heat of formation + Delta-G solvation = -45.198285 kcal Electronic energy + Delta-G solvation = -19188.300074 eV Core-core repulsion = 16083.141806 eV Total energy + Delta-G solvation = -3105.158268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72674 -40.05909 -37.50386 -36.90574 -34.79760 -33.89795 -31.99350 -31.13999 -30.48337 -27.25746 -25.20727 -23.82738 -23.75693 -22.05825 -20.44603 -18.72085 -18.11960 -17.58955 -17.05283 -16.69268 -16.06499 -15.95391 -15.79882 -14.81910 -14.56996 -14.47869 -14.42527 -14.24370 -14.04522 -13.56692 -13.29483 -13.23936 -12.82179 -12.64409 -12.58512 -12.31045 -12.23393 -12.12619 -12.05944 -11.95176 -11.74829 -11.62102 -10.86344 -10.33326 -9.97507 -9.49236 -9.37281 -8.32312 -6.08953 0.16682 0.36019 1.17752 1.40154 1.41302 1.51374 2.10202 2.31059 2.64868 3.03061 3.13698 3.79630 3.82854 3.99736 4.16660 4.19965 4.31479 4.38856 4.42993 4.48207 4.65037 4.69878 4.77574 4.86510 4.97096 5.06528 5.11579 5.24735 5.28029 5.29562 5.32458 5.47106 5.57161 5.67218 5.86372 6.25816 6.58351 7.21512 7.50993 8.11807 8.71090 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.038110 B = 0.003253 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.532706 B = 8605.637797 C = 8750.263183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.457 5.457 4 C -0.344 4.344 5 H 0.060 0.940 6 C 0.004 3.996 7 N -0.892 5.892 8 Si 0.980 3.020 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.263 1.263 12 C 0.447 3.553 13 O -0.630 6.630 14 C -0.112 4.112 15 C -0.056 4.056 16 C -0.076 4.076 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.050 4.050 20 Cl -0.073 7.073 21 C -0.110 4.110 22 C -0.111 4.111 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.272 0.728 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 -4.690 15.652 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.176 5.176 4 C -0.472 4.472 5 H 0.078 0.922 6 C -0.198 4.198 7 N -0.529 5.529 8 Si 0.803 3.197 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.188 1.188 12 C 0.237 3.763 13 O -0.517 6.517 14 C -0.152 4.152 15 C -0.093 4.093 16 C -0.076 4.076 17 C -0.125 4.125 18 C -0.127 4.127 19 C -0.077 4.077 20 Cl -0.044 7.044 21 C -0.129 4.129 22 C -0.129 4.129 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.061 -4.389 15.669 17.738 hybrid contribution 0.356 0.270 -0.933 1.035 sum -6.705 -4.119 14.735 16.705 Atomic orbital electron populations 1.22112 0.95248 1.02478 1.01384 1.21547 0.94021 0.83574 1.02984 1.43762 1.56201 1.12969 1.04637 1.19315 1.36584 0.98119 0.93211 0.92191 1.26137 0.93179 0.96629 1.03883 1.69986 1.29467 1.18201 1.35284 0.85220 0.78869 0.78014 0.77592 1.20384 1.19698 1.18776 1.21396 0.80824 0.87485 0.86605 1.90471 1.52257 1.21036 1.87916 1.21533 1.03807 0.99198 0.90652 1.20190 1.02298 0.97133 0.89715 1.20024 0.94369 0.97444 0.95769 1.21231 0.96042 0.99572 0.95687 1.21238 0.99912 0.96920 0.94636 1.21071 0.95588 1.00889 0.90118 1.98361 1.93639 1.80012 1.32406 1.21214 0.95165 1.00108 0.96367 1.21221 1.00271 0.96959 0.94466 0.92411 0.94108 0.89789 0.90481 0.91563 0.91805 0.89071 0.88056 0.91109 0.91809 0.83809 0.83197 0.83486 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 10.15 71.98 0.73 -4.41 16 2 C 0.10 4.29 5.41 86.38 0.47 4.75 16 3 N -0.46 -23.20 2.50 -635.53 -1.59 -24.80 16 4 C -0.34 -19.58 8.84 84.04 0.74 -18.83 16 5 H 0.06 3.64 7.82 -2.91 -0.02 3.62 16 6 C 0.00 0.23 4.95 84.93 0.42 0.65 16 7 N -0.89 -48.36 11.61 21.66 0.25 -48.11 16 8 Si 0.98 42.49 29.59 68.60 2.03 44.52 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 C 0.45 21.70 7.59 87.66 0.67 22.37 16 13 O -0.63 -35.81 15.89 -3.06 -0.05 -35.86 16 14 C -0.11 -3.86 4.29 29.85 0.13 -3.73 16 15 C -0.06 -1.72 4.63 29.84 0.14 -1.58 16 16 C -0.08 -1.87 5.13 -19.87 -0.10 -1.97 16 17 C -0.11 -2.27 9.70 22.27 0.22 -2.06 16 18 C -0.11 -2.08 9.83 22.29 0.22 -1.86 16 19 C -0.05 -1.00 6.32 22.32 0.14 -0.86 16 20 Cl -0.07 -1.33 28.96 -2.72 -0.08 -1.41 16 21 C -0.11 -2.20 9.83 22.29 0.22 -1.99 16 22 C -0.11 -2.50 9.70 22.26 0.22 -2.28 16 23 H 0.06 1.74 6.60 -2.39 -0.02 1.73 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.08 3.65 5.76 -2.39 -0.01 3.63 16 27 H 0.07 2.49 6.66 -2.39 -0.02 2.47 16 28 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.09 2.96 7.41 -2.39 -0.02 2.94 16 30 H 0.10 3.02 6.54 -2.39 -0.02 3.00 16 31 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 32 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 33 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -66.96 319.94 5.84 -61.12 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.08 Total: 16.32 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 4.20 Total: -11.79 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.34 Total: -72.90 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.05 Total: -35.86 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -66.96 5.84 -61.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299306113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.919 kcal (2) G-P(sol) polarization free energy of solvation -66.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds