Wall clock time and date at job start Tue Mar 31 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37093 * 120.00213 * 2 1 4 4 H 1.08002 * 120.00074 * 204.39785 * 3 2 1 5 5 C 1.38949 * 120.00050 * 24.39428 * 3 2 1 6 6 N 1.31414 * 119.99653 * 12.65935 * 5 3 2 7 7 Si 1.86799 * 120.00184 * 192.65439 * 5 3 2 8 8 H 1.48500 * 109.47381 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47218 * 120.00360 * 7 5 3 10 10 H 1.48502 * 109.46993 * 240.00263 * 7 5 3 11 11 C 1.34779 * 119.99738 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99626 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00011 * 0.02562 * 11 2 1 14 14 C 1.53008 * 109.46782 * 179.97438 * 13 11 2 15 15 C 1.52999 * 109.46567 * 179.97438 * 14 13 11 16 16 C 1.50704 * 109.46700 * 179.97438 * 15 14 13 17 17 C 1.38245 * 119.98784 * 270.29873 * 16 15 14 18 18 C 1.38214 * 120.01293 * 180.25475 * 17 16 15 19 19 C 1.38353 * 119.98345 * 359.47467 * 18 17 16 20 20 Cl 1.73602 * 120.00970 * 180.27871 * 19 18 17 21 21 C 1.38354 * 119.97437 * 0.24607 * 19 18 17 22 22 C 1.38207 * 119.99003 * 0.02562 * 21 19 18 23 23 H 1.08996 * 109.47573 * 265.86272 * 1 2 3 24 24 H 1.09004 * 109.47052 * 25.86516 * 1 2 3 25 25 H 1.09003 * 109.47306 * 145.85897 * 1 2 3 26 26 H 0.97000 * 119.99558 * 179.97438 * 6 5 3 27 27 H 1.08994 * 109.47057 * 59.99765 * 13 11 2 28 28 H 1.08992 * 109.46794 * 299.99322 * 13 11 2 29 29 H 1.09002 * 109.46877 * 59.99826 * 14 13 11 30 30 H 1.08997 * 109.46932 * 299.99801 * 14 13 11 31 31 H 1.09002 * 109.47375 * 60.00485 * 15 14 13 32 32 H 1.08997 * 109.47621 * 299.99733 * 15 14 13 33 33 H 1.07998 * 119.99516 * 0.02562 * 17 16 15 34 34 H 1.07994 * 120.00599 * 179.74638 * 18 17 16 35 35 H 1.08005 * 120.00112 * 180.02562 * 21 19 18 36 36 H 1.08000 * 119.99837 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1582 1.2290 -0.3864 5 6 1.5488 2.3369 0.4970 6 7 0.4348 2.2490 1.1885 7 14 2.3236 4.0073 0.1824 8 1 3.5639 3.8353 -0.6159 9 1 1.3683 4.8629 -0.5663 10 1 2.6542 4.6516 1.4788 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0005 14 6 2.3796 -3.6353 0.0005 15 6 1.6145 -4.9602 0.0012 16 6 2.5938 -6.1057 0.0005 17 6 3.0467 -6.6269 -1.1971 18 6 3.9408 -7.6809 -1.1983 19 6 4.3909 -8.2072 -0.0006 20 17 5.5194 -9.5263 -0.0013 21 6 3.9417 -7.6813 1.1977 22 6 3.0433 -6.6311 1.1977 23 1 -0.3634 -0.0741 1.0249 24 1 -0.3633 0.9248 -0.4483 25 1 -0.3634 -0.8506 -0.5768 26 1 0.0150 3.0515 1.5357 27 1 0.7590 -2.5302 -0.8896 28 1 0.7584 -2.5298 0.8903 29 1 3.0062 -3.5775 0.8905 30 1 3.0062 -3.5775 -0.8895 31 1 0.9875 -5.0183 -0.8886 32 1 0.9881 -5.0178 0.8914 33 1 2.6989 -6.2129 -2.1320 34 1 4.2913 -8.0907 -2.1340 35 1 4.2931 -8.0915 2.1330 36 1 2.6923 -6.2207 2.1330 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299539619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:22 Heat of formation + Delta-G solvation = -30.340714 kcal Electronic energy + Delta-G solvation = -18655.049067 eV Core-core repulsion = 15550.535072 eV Total energy + Delta-G solvation = -3104.513995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.59585 -38.44740 -36.73028 -34.98244 -34.21634 -31.67678 -31.20816 -30.73809 -27.11625 -25.99929 -24.31684 -22.98598 -22.32114 -20.78873 -18.67020 -17.24484 -16.82932 -15.94877 -15.88122 -15.37624 -14.92958 -14.49915 -14.13672 -13.75113 -13.71346 -13.59073 -13.40290 -12.52611 -12.42755 -12.14227 -11.70312 -11.59270 -11.44682 -11.30020 -11.17551 -11.00477 -10.96832 -10.95344 -10.74349 -10.36967 -10.30410 -10.17245 -9.18491 -8.99776 -8.65644 -8.33522 -7.62816 -6.30433 -3.86324 1.00703 1.15085 1.96870 3.16017 3.26180 3.33313 3.48170 3.94801 4.16039 4.60731 4.65523 4.73237 4.96688 5.09549 5.14552 5.20024 5.39812 5.43135 5.51701 5.68826 5.75068 5.86748 5.94938 6.03217 6.07140 6.09187 6.18111 6.38106 6.44773 6.61148 6.66079 6.73021 6.86877 7.20569 7.58790 8.18154 8.52139 9.22396 9.46467 10.03287 10.74809 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.042133 B = 0.002678 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.395511 B =10451.743313 C =10736.379385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.028 3.972 6 N -0.884 5.884 7 Si 0.925 3.075 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.446 3.554 12 O -0.591 6.591 13 C -0.130 4.130 14 C -0.092 4.092 15 C -0.085 4.085 16 C -0.065 4.065 17 C -0.105 4.105 18 C -0.109 4.109 19 C -0.044 4.044 20 Cl -0.080 7.080 21 C -0.109 4.109 22 C -0.105 4.105 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.025 0.975 26 H 0.266 0.734 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 -18.821 -2.283 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.170 5.170 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.524 5.524 7 Si 0.751 3.249 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.234 3.766 12 O -0.476 6.476 13 C -0.170 4.170 14 C -0.130 4.130 15 C -0.123 4.123 16 C -0.065 4.065 17 C -0.124 4.124 18 C -0.128 4.128 19 C -0.071 4.071 20 Cl -0.051 7.051 21 C -0.127 4.127 22 C -0.123 4.123 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.533 -18.774 -2.196 18.909 hybrid contribution 0.215 0.810 0.014 0.838 sum 0.749 -17.964 -2.182 18.111 Atomic orbital electron populations 1.21454 0.81355 0.99812 1.00490 1.43619 1.05430 1.04895 1.63052 1.19684 1.00537 0.84290 1.38778 0.88530 1.25343 0.96677 1.00120 0.95278 1.70003 1.19353 1.29422 1.33608 0.85888 0.79182 0.81580 0.78207 1.19249 1.20700 1.20773 1.20156 0.88097 0.85012 0.83290 1.90510 1.14137 1.87298 1.55691 1.21545 0.98815 0.94031 1.02612 1.21249 0.97454 0.90652 1.03665 1.20759 0.96151 0.92223 1.03137 1.20126 0.97266 0.96244 0.92911 1.21067 0.97162 0.95758 0.98368 1.21030 0.97950 0.97007 0.96780 1.20901 0.97052 0.93731 0.95369 1.98359 1.60596 1.47186 1.98983 1.21036 0.97881 0.97032 0.96787 1.21079 0.97076 0.95750 0.98414 0.93113 0.90855 0.95597 0.92385 0.90639 0.90399 0.91300 0.91372 0.90771 0.90701 0.84991 0.85127 0.85110 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 8.44 59.85 0.51 3.00 16 2 N -0.45 -11.63 3.01 -122.19 -0.37 -12.00 16 3 C -0.30 -8.61 9.24 -14.94 -0.14 -8.74 16 4 H 0.10 2.87 7.45 -52.49 -0.39 2.48 16 5 C 0.03 0.76 5.04 -17.47 -0.09 0.67 16 6 N -0.88 -23.76 10.83 55.50 0.60 -23.16 16 7 Si 0.92 20.92 29.57 -169.99 -5.03 15.89 16 8 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 C 0.45 10.82 7.63 -10.98 -0.08 10.73 16 12 O -0.59 -16.47 15.69 5.55 0.09 -16.38 16 13 C -0.13 -2.25 4.31 -27.88 -0.12 -2.38 16 14 C -0.09 -1.42 4.49 -26.73 -0.12 -1.54 16 15 C -0.09 -0.97 5.34 -27.88 -0.15 -1.12 16 16 C -0.07 -0.74 5.13 -104.61 -0.54 -1.28 16 17 C -0.11 -1.13 9.70 -39.59 -0.38 -1.51 16 18 C -0.11 -1.13 9.83 -39.55 -0.39 -1.52 16 19 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 20 Cl -0.08 -0.80 28.96 -51.86 -1.50 -2.31 16 21 C -0.11 -1.14 9.83 -39.55 -0.39 -1.53 16 22 C -0.10 -1.14 9.70 -39.59 -0.38 -1.52 16 23 H 0.05 1.15 7.83 -51.93 -0.41 0.74 16 24 H 0.07 1.72 6.80 -51.93 -0.35 1.37 16 25 H 0.03 0.46 6.61 -51.93 -0.34 0.12 16 26 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.08 1.16 7.41 -51.93 -0.38 0.77 16 28 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 29 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 31 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -31.41 321.51 -8.70 -40.10 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.81 Total: 0.47 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.53 Total: -7.46 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.23 Total: -35.16 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.09 Total: -16.38 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.41 -8.70 -40.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299539619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.764 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds