Wall clock time and date at job start Tue Mar 31 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35922 * 117.00325 * 2 1 4 4 C 1.38741 * 120.03661 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.95209 * 180.02562 * 4 3 2 6 6 C 1.38381 * 120.04494 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 119.95760 * 180.27925 * 6 5 4 8 8 C 1.38346 * 120.08685 * 0.02562 * 6 5 4 9 9 C 1.38164 * 120.03957 * 0.02562 * 8 6 5 10 10 C 1.50699 * 120.02265 * 180.02562 * 9 8 6 11 11 N 1.46504 * 109.47101 * 259.99978 * 10 9 8 12 12 C 1.36938 * 119.99479 * 89.99888 * 11 10 9 13 13 H 1.08002 * 119.99355 * 214.83406 * 12 11 10 14 14 C 1.38806 * 120.00628 * 34.84221 * 12 11 10 15 15 N 1.31625 * 119.99711 * 22.18638 * 14 12 11 16 16 Si 1.86799 * 120.00061 * 202.19336 * 14 12 11 17 17 H 1.48501 * 109.47076 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47148 * 119.99686 * 16 14 12 19 19 H 1.48504 * 109.47253 * 239.99370 * 16 14 12 20 20 C 1.46496 * 120.00031 * 269.99684 * 11 10 9 21 21 C 1.52998 * 117.49881 * 194.18555 * 20 11 10 22 22 C 1.52998 * 117.49623 * 125.56344 * 20 11 10 23 23 H 1.08990 * 109.47305 * 300.00116 * 1 2 3 24 24 H 1.09006 * 109.47136 * 60.00251 * 1 2 3 25 25 H 1.09001 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.02603 * 359.95749 * 4 3 2 27 27 H 1.08000 * 119.97878 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.98151 * 180.02562 * 8 6 5 29 29 H 1.09004 * 109.46964 * 20.00179 * 10 9 8 30 30 H 1.08997 * 109.47562 * 139.99974 * 10 9 8 31 31 H 0.97002 * 119.99252 * 174.56864 * 15 14 12 32 32 H 1.09000 * 115.54798 * 339.90260 * 20 11 10 33 33 H 1.09001 * 117.50122 * 0.02562 * 21 20 11 34 34 H 1.09000 * 117.49511 * 145.01954 * 21 20 11 35 35 H 1.09002 * 117.49991 * 214.97478 * 22 20 11 36 36 H 1.08997 * 117.49862 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9203 3.6049 0.0000 6 6 3.3022 3.6763 -0.0005 7 17 4.0904 5.2231 0.0061 8 6 4.0566 2.5166 -0.0011 9 6 3.4312 1.2846 -0.0016 10 6 4.2533 0.0216 -0.0016 11 7 4.3192 -0.5182 -1.3620 12 6 5.3289 -0.1332 -2.2031 13 1 5.1394 -0.0273 -3.2611 14 6 6.5958 0.1208 -1.6961 15 7 6.9610 -0.4025 -0.5449 16 14 7.7824 1.2054 -2.6474 17 1 7.1349 1.6658 -3.9020 18 1 8.1505 2.3817 -1.8192 19 1 9.0054 0.4304 -2.9776 20 6 3.3049 -1.4697 -1.8224 21 6 3.5973 -2.2473 -3.1072 22 6 2.5511 -1.1308 -3.1099 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2128 2.3199 0.0003 27 1 1.3331 4.5113 0.0000 28 1 5.1351 2.5743 -0.0011 29 1 5.2607 0.2439 0.3504 30 1 3.7915 -0.7125 0.6586 31 1 7.8710 -0.2907 -0.2283 32 1 2.7525 -1.9849 -1.0365 33 1 4.5444 -2.0511 -3.6098 34 1 3.2374 -3.2744 -3.1667 35 1 1.5029 -1.4236 -3.1713 36 1 2.8101 -0.2001 -3.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299558459.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:07 Heat of formation + Delta-G solvation = 31.113836 kcal Electronic energy + Delta-G solvation = -20447.205386 eV Core-core repulsion = 17345.356260 eV Total energy + Delta-G solvation = -3101.849126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.82128 -37.28142 -36.88880 -35.76766 -33.66957 -31.66244 -29.84342 -29.32612 -27.04434 -25.66200 -23.61829 -21.76919 -21.30603 -20.97133 -19.74852 -17.67729 -16.47121 -15.98098 -15.65055 -15.44933 -15.19332 -14.32109 -14.11003 -13.82374 -13.55345 -13.20478 -12.76708 -12.59064 -12.08538 -11.82124 -11.63031 -11.45348 -11.16932 -10.95092 -10.80061 -10.71042 -10.56215 -10.37465 -10.31777 -10.01721 -9.96963 -9.59370 -9.25860 -8.47376 -8.39625 -7.59212 -6.51727 -5.86074 -3.36625 1.71528 1.73305 2.57930 3.32808 3.42777 3.46153 3.65698 4.08470 4.43939 5.01215 5.06022 5.16070 5.26449 5.31986 5.35691 5.39502 5.58826 5.63110 5.83531 6.00941 6.06904 6.17956 6.30429 6.38123 6.41206 6.53052 6.60981 6.68888 6.74952 7.00144 7.06331 7.17766 7.21585 7.61234 7.79646 7.81143 8.46758 9.12595 9.76378 10.32195 11.15233 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.009579 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.933751 B = 2922.495850 C = 4738.085896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.298 6.298 3 C 0.137 3.863 4 C -0.207 4.207 5 C -0.092 4.092 6 C -0.071 4.071 7 Cl -0.092 7.092 8 C -0.058 4.058 9 C -0.088 4.088 10 C 0.182 3.818 11 N -0.539 5.539 12 C -0.253 4.253 13 H 0.063 0.937 14 C 0.015 3.985 15 N -0.887 5.887 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.289 1.289 20 C 0.143 3.857 21 C -0.202 4.202 22 C -0.224 4.224 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.043 0.957 31 H 0.258 0.742 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 3.986 2.709 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.211 6.211 3 C 0.091 3.909 4 C -0.227 4.227 5 C -0.112 4.112 6 C -0.098 4.098 7 Cl -0.063 7.063 8 C -0.078 4.078 9 C -0.092 4.092 10 C 0.056 3.944 11 N -0.254 5.254 12 C -0.383 4.383 13 H 0.081 0.919 14 C -0.186 4.186 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.215 1.215 20 C 0.033 3.967 21 C -0.241 4.241 22 C -0.265 4.265 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.113 0.887 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.154 0.846 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.986 3.965 2.854 12.024 hybrid contribution 0.331 0.996 -0.757 1.294 sum -10.655 4.961 2.097 11.939 Atomic orbital electron populations 1.22966 0.79730 1.03368 1.00648 1.86189 1.20019 1.26566 1.88277 1.18983 0.92123 0.83834 0.95936 1.21008 0.99487 0.91890 1.10268 1.20535 0.92190 0.97479 1.00955 1.20777 0.92639 0.85999 1.10378 1.98318 1.81129 1.29486 1.97378 1.20865 1.00430 0.89376 0.97132 1.20652 0.90890 0.98246 0.99401 1.19998 1.00023 0.87883 0.86447 1.43334 1.25848 1.44593 1.11577 1.19005 0.87853 1.40254 0.91173 0.91944 1.25091 0.96698 0.99587 0.97177 1.69866 1.17454 1.44156 1.21412 0.86379 0.80863 0.80764 0.79870 1.20016 1.21035 1.21542 1.21024 0.93719 0.93701 0.88207 1.23113 1.00446 0.94518 1.06000 1.23267 0.95107 0.99552 1.08592 0.93316 0.93106 0.88724 0.85628 0.85857 0.84643 0.87096 0.93887 0.93206 0.89087 0.88470 0.90942 0.91286 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 16 2 O -0.30 -4.93 8.38 -19.49 -0.16 -5.09 16 3 C 0.14 2.45 6.66 -39.23 -0.26 2.19 16 4 C -0.21 -3.18 9.04 -39.44 -0.36 -3.53 16 5 C -0.09 -1.43 9.82 -39.57 -0.39 -1.82 16 6 C -0.07 -1.25 6.32 -39.49 -0.25 -1.50 16 7 Cl -0.09 -1.47 28.95 -51.86 -1.50 -2.97 16 8 C -0.06 -1.16 9.45 -39.57 -0.37 -1.53 16 9 C -0.09 -1.79 5.48 -104.48 -0.57 -2.37 16 10 C 0.18 4.18 5.13 -5.19 -0.03 4.16 16 11 N -0.54 -13.05 2.79 -167.03 -0.47 -13.51 16 12 C -0.25 -6.68 8.15 -15.06 -0.12 -6.81 16 13 H 0.06 1.70 7.08 -52.49 -0.37 1.33 16 14 C 0.01 0.39 4.96 -17.43 -0.09 0.30 16 15 N -0.89 -24.34 11.32 55.49 0.63 -23.71 16 16 Si 0.89 21.25 29.61 -169.99 -5.03 16.22 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C 0.14 3.06 5.62 -67.93 -0.38 2.68 16 21 C -0.20 -4.09 9.79 -26.73 -0.26 -4.35 16 22 C -0.22 -4.40 10.07 -26.73 -0.27 -4.67 16 23 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 24 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.13 1.54 6.30 -52.49 -0.33 1.21 16 27 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.14 2.85 8.04 -52.49 -0.42 2.43 16 29 H 0.11 2.83 5.21 -51.93 -0.27 2.56 16 30 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16 31 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 32 H 0.09 1.86 7.77 -51.93 -0.40 1.46 16 33 H 0.10 2.17 6.89 -51.93 -0.36 1.81 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.73 8.01 -51.93 -0.42 1.32 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -27.89 315.84 -8.73 -36.62 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.60 Total: 3.62 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.36 Total: -15.93 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.16 Total: -37.23 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.16 Total: -5.09 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.50 Total: -2.97 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.89 -8.73 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299558459.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.732 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds