Wall clock time and date at job start Tue Mar 31 2020 05:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 115.55154 * 2 1 4 4 C 1.53005 * 117.49612 * 145.66658 * 2 1 3 5 5 H 1.08994 * 117.49932 * 214.97843 * 4 2 1 6 6 C 1.50701 * 117.49717 * 359.97438 * 4 2 1 7 7 O 1.21278 * 120.00061 * 359.90674 * 6 4 2 8 8 N 1.34776 * 119.99405 * 179.91183 * 6 4 2 9 9 C 1.37135 * 120.00463 * 354.89856 * 8 6 4 10 10 H 1.08001 * 119.99944 * 344.60438 * 9 8 6 11 11 C 1.38890 * 120.00189 * 164.60078 * 9 8 6 12 12 N 1.31425 * 119.99787 * 343.57266 * 11 9 8 13 13 Si 1.86794 * 120.00305 * 163.57573 * 11 9 8 14 14 H 1.48501 * 109.46949 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47441 * 119.99913 * 13 11 9 16 16 H 1.48504 * 109.47348 * 240.00117 * 13 11 9 17 17 C 1.39792 * 119.99721 * 174.90207 * 8 6 4 18 18 C 1.38966 * 120.07665 * 101.09318 * 17 8 6 19 19 C 1.38087 * 119.91708 * 179.79220 * 18 17 8 20 20 C 1.38304 * 120.07911 * 0.46514 * 19 18 17 21 21 C 1.38302 * 120.15990 * 359.78512 * 20 19 18 22 22 C 1.38086 * 120.07375 * 359.97438 * 21 20 19 23 23 C 1.53001 * 117.49645 * 214.28721 * 2 1 3 24 24 F 1.39902 * 117.49211 * 145.02080 * 23 2 1 25 25 F 1.39901 * 117.49951 * 0.02562 * 23 2 1 26 26 H 1.08999 * 109.47027 * 274.33083 * 1 2 3 27 27 H 1.09003 * 109.47005 * 34.32747 * 1 2 3 28 28 H 1.08995 * 109.47365 * 154.33345 * 1 2 3 29 29 H 0.97002 * 119.99677 * 185.01444 * 12 11 9 30 30 H 1.07999 * 120.03928 * 0.02562 * 18 17 8 31 31 H 1.08006 * 119.95368 * 180.21193 * 19 18 17 32 32 H 1.08004 * 119.91702 * 179.76517 * 20 19 18 33 33 H 1.07993 * 119.96557 * 179.97438 * 21 20 19 34 34 H 1.08008 * 120.03493 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1208 0.7655 5 1 3.1715 -0.8748 1.2687 6 6 1.3719 -2.1397 1.4622 7 8 0.1638 -2.0511 1.4043 8 7 1.9415 -3.1494 2.1496 9 6 3.3032 -3.3107 2.1291 10 1 3.8959 -2.8023 1.3830 11 6 3.9200 -4.1276 3.0678 12 7 3.2729 -4.4847 4.1545 13 14 5.6694 -4.7187 2.7858 14 1 6.1718 -4.1807 1.4961 15 1 6.5372 -4.2428 3.8929 16 1 5.6897 -6.2030 2.7439 17 6 1.1441 -4.0324 2.8837 18 6 0.8390 -5.2868 2.3695 19 6 0.0546 -6.1580 3.0993 20 6 -0.4351 -5.7798 4.3361 21 6 -0.1377 -4.5301 4.8487 22 6 0.6502 -3.6557 4.1266 23 6 2.2365 -1.1213 -0.7646 24 9 3.4366 -0.8060 -1.4106 25 9 1.4339 -2.0678 -1.4106 26 1 -0.3633 0.0776 1.0247 27 1 -0.3633 0.8487 -0.5795 28 1 -0.3634 -0.9262 -0.4451 29 1 3.7268 -4.9942 4.8439 30 1 1.2180 -5.5814 1.4021 31 1 -0.1801 -7.1345 2.7017 32 1 -1.0515 -6.4618 4.9030 33 1 -0.5221 -4.2378 5.8146 34 1 0.8823 -2.6800 4.5276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334693652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:35 Heat of formation + Delta-G solvation = -59.736743 kcal Electronic energy + Delta-G solvation = -22547.934536 eV Core-core repulsion = 18890.349153 eV Total energy + Delta-G solvation = -3657.585383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.26043 -46.92761 -39.57526 -37.76727 -35.64142 -34.61700 -31.78818 -29.92136 -29.28855 -27.97109 -25.08977 -23.83714 -21.56841 -21.35740 -20.62919 -19.20751 -17.68921 -17.63340 -16.41851 -15.86372 -15.55990 -15.41801 -14.76821 -14.50883 -14.22207 -13.63377 -13.48751 -13.43924 -13.17865 -12.93650 -12.74581 -12.46864 -12.31791 -11.95024 -11.69842 -11.58336 -11.53109 -11.22138 -11.01746 -10.55903 -10.41811 -10.33406 -10.09145 -9.50337 -9.44895 -8.58068 -8.21424 -7.90500 -7.62576 -6.34733 -4.11576 2.41399 2.47576 2.89439 3.13632 3.16239 3.18190 3.34539 3.89999 4.13062 4.24794 4.64259 4.79983 4.96281 5.07719 5.13144 5.45593 5.76757 5.84290 5.88342 5.94292 5.98638 6.14499 6.19032 6.34515 6.38633 6.52794 6.74906 6.86276 7.00781 7.23643 7.29831 7.42007 7.54492 7.70576 7.91919 8.32557 8.88318 9.22326 9.65591 10.49635 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.008332 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.325095 B = 3359.926377 C = 4619.875014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 H 0.127 0.873 4 C -0.151 4.151 5 H 0.144 0.856 6 C 0.488 3.512 7 O -0.579 6.579 8 N -0.400 5.400 9 C -0.355 4.355 10 H 0.103 0.897 11 C 0.047 3.953 12 N -0.842 5.842 13 Si 0.920 3.080 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.278 1.278 17 C 0.236 3.764 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.144 4.144 21 C -0.122 4.122 22 C -0.065 4.065 23 C 0.206 3.794 24 F -0.165 7.165 25 F -0.154 7.154 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.273 0.727 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 3.609 -2.456 4.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.143 4.143 3 H 0.145 0.855 4 C -0.173 4.173 5 H 0.162 0.838 6 C 0.277 3.723 7 O -0.463 6.463 8 N -0.115 5.115 9 C -0.481 4.481 10 H 0.121 0.879 11 C -0.161 4.161 12 N -0.477 5.477 13 Si 0.746 3.254 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.203 1.203 17 C 0.146 3.854 18 C -0.141 4.141 19 C -0.141 4.141 20 C -0.162 4.162 21 C -0.140 4.140 22 C -0.085 4.085 23 C 0.169 3.831 24 F -0.146 7.146 25 F -0.134 7.134 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.240 3.433 -2.356 4.728 hybrid contribution 1.552 -0.585 -0.105 1.662 sum -0.688 2.848 -2.461 3.826 Atomic orbital electron populations 1.21331 0.89871 1.02014 1.03567 1.23703 0.98650 0.94423 0.97500 0.85498 1.23580 1.03174 0.99232 0.91289 0.83814 1.18724 0.87141 0.82273 0.84209 1.90592 1.13835 1.75930 1.65987 1.41267 1.06473 1.22280 1.41507 1.19664 0.80490 1.31340 1.16565 0.87938 1.25288 1.00057 0.96377 0.94423 1.69950 1.36800 1.35196 1.05754 0.85969 0.81601 0.79043 0.78799 1.19048 1.20497 1.20311 1.17067 0.89210 0.88983 0.90125 1.20988 0.99298 0.94099 0.99677 1.20667 0.99526 0.98537 0.95406 1.20747 1.02353 0.96614 0.96495 1.20679 0.99943 0.94388 0.99033 1.20781 0.95673 0.98928 0.93073 1.20048 0.80741 0.94613 0.87734 1.92993 1.45447 1.92659 1.83492 1.93003 1.71947 1.65335 1.83142 0.90069 0.93404 0.90580 0.91563 0.87487 0.87556 0.87721 0.87528 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 8.40 37.16 0.31 -1.48 16 2 C -0.12 -1.97 6.39 -90.61 -0.58 -2.55 16 3 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 4 C -0.15 -2.90 4.86 -91.77 -0.45 -3.34 16 5 H 0.14 2.60 7.29 -51.93 -0.38 2.22 16 6 C 0.49 11.33 6.98 -10.99 -0.08 11.26 16 7 O -0.58 -14.21 13.08 5.56 0.07 -14.14 16 8 N -0.40 -9.88 2.66 -58.98 -0.16 -10.03 16 9 C -0.35 -8.72 9.02 -14.94 -0.13 -8.85 16 10 H 0.10 2.41 6.52 -52.49 -0.34 2.07 16 11 C 0.05 1.15 5.24 -17.48 -0.09 1.05 16 12 N -0.84 -21.19 10.34 55.49 0.57 -20.62 16 13 Si 0.92 19.15 29.59 -169.99 -5.03 14.12 16 14 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 17 C 0.24 5.77 2.30 -83.69 -0.19 5.58 16 18 C -0.12 -2.80 9.96 -39.37 -0.39 -3.19 16 19 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 20 C -0.14 -2.75 10.04 -39.53 -0.40 -3.14 16 21 C -0.12 -2.45 10.04 -39.61 -0.40 -2.85 16 22 C -0.07 -1.51 8.65 -39.37 -0.34 -1.85 16 23 C 0.21 3.78 5.13 -26.73 -0.14 3.65 16 24 F -0.17 -2.91 17.60 2.25 0.04 -2.87 16 25 F -0.15 -3.13 16.03 2.25 0.04 -3.09 16 26 H 0.08 1.40 7.25 -51.93 -0.38 1.03 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.41 6.22 -51.93 -0.32 1.09 16 29 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 30 H 0.11 2.46 8.06 -52.49 -0.42 2.03 16 31 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 32 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.11 2.45 8.06 -52.48 -0.42 2.03 16 LS Contribution 299.84 15.07 4.52 4.52 Total: -1.00 -27.73 299.84 -6.73 -34.46 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.52 Total: 6.23 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -3.27 Total: -8.58 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.42 Total: -30.65 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.07 Total: -14.14 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.08 Total: -5.96 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.73 -6.73 -34.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334693652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.278 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds