Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 115.56419 * 2 1 4 4 C 1.52998 * 117.49773 * 145.69790 * 2 1 3 5 5 H 1.09002 * 117.52014 * 0.02562 * 4 2 1 6 6 C 1.50699 * 117.49742 * 214.97716 * 4 2 1 7 7 O 1.21287 * 120.00219 * 359.97438 * 6 4 2 8 8 N 1.34775 * 120.00173 * 179.97438 * 6 4 2 9 9 C 1.39242 * 120.00178 * 185.08415 * 8 6 4 10 10 C 1.39472 * 119.83111 * 33.37527 * 9 8 6 11 11 C 1.36377 * 120.16779 * 179.97438 * 10 9 8 12 12 C 1.40867 * 119.82774 * 0.02562 * 11 10 9 13 13 C 1.41152 * 120.16460 * 179.97438 * 12 11 10 14 14 H 1.08006 * 120.00145 * 209.22914 * 13 12 11 15 15 C 1.39907 * 120.00174 * 29.22185 * 13 12 11 16 16 N 1.30865 * 119.99770 * 15.73496 * 15 13 12 17 17 Si 1.86798 * 120.00193 * 195.73358 * 15 13 12 18 18 H 1.48495 * 109.47020 * 59.99897 * 17 15 13 19 19 H 1.48500 * 109.47204 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47068 * 300.00160 * 17 15 13 21 21 C 1.40873 * 119.67347 * 359.97438 * 12 11 10 22 22 C 1.36372 * 119.82736 * 0.02562 * 21 12 11 23 23 C 1.53000 * 60.00324 * 107.48529 * 4 2 1 24 24 F 1.39905 * 117.49681 * 107.48594 * 23 4 2 25 25 F 1.39898 * 117.50031 * 252.48746 * 23 4 2 26 26 H 1.08995 * 109.46912 * 274.30929 * 1 2 3 27 27 H 1.09002 * 109.47076 * 34.30691 * 1 2 3 28 28 H 1.08999 * 109.47609 * 154.30134 * 1 2 3 29 29 H 0.97001 * 119.99509 * 5.08520 * 8 6 4 30 30 H 1.08001 * 119.91839 * 0.28057 * 10 9 8 31 31 H 1.08003 * 120.08390 * 180.02562 * 11 10 9 32 32 H 0.97007 * 120.00320 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.08763 * 179.97438 * 21 12 11 34 34 H 1.07994 * 119.91709 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1211 0.7648 5 1 1.6115 -1.8591 1.2678 6 6 3.5292 -0.7813 1.4607 7 8 3.9720 0.3462 1.4008 8 7 4.1934 -1.7304 2.1495 9 6 5.3303 -1.3936 2.8796 10 6 5.4193 -0.1410 3.4864 11 6 6.5293 0.1959 4.2035 12 6 7.5878 -0.7249 4.3299 13 6 8.7403 -0.3835 5.0700 14 1 9.6958 -0.8153 4.8112 15 6 8.6448 0.5144 6.1387 16 7 7.4749 0.7998 6.6509 17 14 10.1873 1.3058 6.8343 18 1 10.8665 2.0865 5.7693 19 1 9.8183 2.2101 7.9529 20 1 11.1034 0.2492 7.3342 21 6 7.4906 -1.9882 3.7141 22 6 6.3743 -2.3107 3.0003 23 6 2.2364 -1.1210 -0.7652 24 9 3.4366 -0.8054 -1.4111 25 9 1.4342 -2.0677 -1.4112 26 1 -0.3633 0.0772 1.0247 27 1 -0.3633 0.8489 -0.5792 28 1 -0.3634 -0.9260 -0.4456 29 1 3.8795 -2.6481 2.1366 30 1 4.6049 0.5622 3.3923 31 1 6.5966 1.1661 4.6732 32 1 7.4087 1.4221 7.3922 33 1 8.2984 -2.6991 3.8064 34 1 6.2984 -3.2786 2.5273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335329005.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = -86.301605 kcal Electronic energy + Delta-G solvation = -21101.420328 eV Core-core repulsion = 17442.683006 eV Total energy + Delta-G solvation = -3658.737322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.83676 -47.48709 -39.91914 -37.65928 -36.22939 -34.50077 -32.99390 -29.68592 -29.42785 -28.67535 -25.49890 -23.61193 -21.62030 -21.34537 -20.72821 -19.68559 -18.15240 -17.35912 -17.22037 -16.47625 -16.19858 -16.02403 -15.19297 -14.34837 -14.31345 -14.11709 -13.93882 -13.75456 -13.53551 -13.26542 -13.02082 -12.97345 -12.63609 -12.10245 -11.99491 -11.87191 -11.50147 -11.16421 -11.12373 -10.87431 -10.70808 -10.21773 -9.95475 -9.69037 -9.51717 -9.16995 -8.96114 -7.58051 -7.01503 -6.75391 -4.33872 2.13255 2.73699 2.79294 3.03315 3.06897 3.09003 3.14503 3.31493 3.55567 3.93007 4.02040 4.29306 4.44838 4.62737 4.85721 4.96537 5.21304 5.34966 5.41635 5.64853 5.65378 5.88853 6.10228 6.32409 6.69769 6.90749 6.99316 7.10780 7.23045 7.52541 7.60896 7.86290 8.01710 8.11930 8.25109 8.56431 8.64047 8.85284 8.94707 10.18591 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.038032 B = 0.003524 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.037905 B = 7943.084117 C = 8240.082512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.114 4.114 3 H 0.144 0.856 4 C -0.186 4.186 5 H 0.146 0.854 6 C 0.526 3.474 7 O -0.516 6.516 8 N -0.639 5.639 9 C -0.008 4.008 10 C -0.085 4.085 11 C -0.150 4.150 12 C 0.110 3.890 13 C -0.462 4.462 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.909 3.091 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.266 1.266 21 C -0.212 4.212 22 C -0.103 4.103 23 C 0.218 3.782 24 F -0.149 7.149 25 F -0.157 7.157 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.396 0.604 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.282 0.718 33 H 0.097 0.903 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.075 -3.213 -8.458 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.134 4.134 3 H 0.162 0.838 4 C -0.209 4.209 5 H 0.164 0.836 6 C 0.311 3.689 7 O -0.392 6.392 8 N -0.281 5.281 9 C -0.100 4.100 10 C -0.105 4.105 11 C -0.170 4.170 12 C 0.107 3.893 13 C -0.492 4.492 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.420 5.420 17 Si 0.734 3.266 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.232 4.232 22 C -0.123 4.123 23 C 0.181 3.819 24 F -0.130 7.130 25 F -0.137 7.137 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.870 -2.286 -8.333 14.682 hybrid contribution 0.564 -0.403 0.256 0.739 sum -11.306 -2.689 -8.077 14.153 Atomic orbital electron populations 1.21434 0.90198 1.03489 1.03512 1.23733 0.97330 0.96359 0.95970 0.83835 1.23892 1.00040 1.04384 0.92545 0.83604 1.19068 0.84292 0.85933 0.79607 1.90729 1.67045 1.20924 1.60474 1.42850 1.27243 1.10797 1.47248 1.17156 0.88852 0.98312 1.05649 1.20395 0.98590 0.94775 0.96764 1.20900 0.94677 1.00046 1.01383 1.17663 0.92723 0.89645 0.89278 1.19510 0.95553 1.22405 1.11697 0.90351 1.25902 0.97369 0.94890 0.96069 1.69818 1.25274 1.27307 1.19554 0.86350 0.81916 0.79591 0.78759 1.18794 1.20332 1.19023 1.20591 0.98060 0.97215 1.07301 1.20040 0.93505 0.97515 1.01199 1.19890 0.81488 0.94035 0.86482 1.93093 1.44402 1.92463 1.83010 1.93010 1.72043 1.65483 1.83166 0.90437 0.90682 0.91281 0.76991 0.87981 0.86576 0.90757 0.88451 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 10.16 37.16 0.38 -0.60 16 2 C -0.11 -1.25 5.91 -90.62 -0.54 -1.79 16 3 H 0.14 1.73 7.67 -51.93 -0.40 1.34 16 4 C -0.19 -2.27 5.90 -91.77 -0.54 -2.81 16 5 H 0.15 1.30 8.14 -51.93 -0.42 0.87 16 6 C 0.53 9.11 6.97 -10.99 -0.08 9.04 16 7 O -0.52 -11.02 13.91 5.55 0.08 -10.94 16 8 N -0.64 -11.20 5.31 -9.74 -0.05 -11.25 16 9 C -0.01 -0.17 6.29 -83.57 -0.53 -0.70 16 10 C -0.09 -2.10 8.57 -39.79 -0.34 -2.44 16 11 C -0.15 -3.99 8.60 -39.26 -0.34 -4.33 16 12 C 0.11 2.92 5.52 -106.80 -0.59 2.33 16 13 C -0.46 -12.22 9.02 -37.85 -0.34 -12.56 16 14 H 0.08 1.98 7.89 -52.48 -0.41 1.56 16 15 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 16 N -0.79 -20.57 11.15 55.55 0.62 -19.95 16 17 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 18 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 C -0.21 -5.11 9.74 -39.26 -0.38 -5.49 16 22 C -0.10 -2.24 9.89 -39.79 -0.39 -2.64 16 23 C 0.22 2.75 5.13 -26.73 -0.14 2.62 16 24 F -0.15 -2.34 17.13 2.25 0.04 -2.30 16 25 F -0.16 -1.83 16.50 2.25 0.04 -1.80 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.49 7.10 -51.93 -0.37 0.12 16 29 H 0.40 5.37 8.81 -40.82 -0.36 5.01 16 30 H 0.10 2.49 6.40 -52.49 -0.34 2.16 16 31 H 0.12 3.20 6.43 -52.48 -0.34 2.86 16 32 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 33 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 34 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -30.17 304.90 -7.09 -37.26 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.46 Total: 8.32 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -3.91 Total: -17.57 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.57 Total: -31.20 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.08 Total: -4.10 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.17 -7.09 -37.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335329005.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.043 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds