Wall clock time and date at job start Tue Mar 31 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 115.56073 * 2 1 4 4 C 1.53002 * 117.50013 * 145.67963 * 2 1 3 5 5 H 1.08999 * 117.50256 * 215.00458 * 4 2 1 6 6 C 1.50702 * 117.49556 * 0.02562 * 4 2 1 7 7 O 1.21284 * 120.00246 * 359.90434 * 6 4 2 8 8 N 1.34781 * 119.99883 * 179.91132 * 6 4 2 9 9 C 1.39235 * 120.00098 * 184.97215 * 8 6 4 10 10 C 1.39474 * 119.83566 * 211.53215 * 9 8 6 11 11 C 1.36379 * 120.17122 * 180.02562 * 10 9 8 12 12 C 1.40864 * 119.82397 * 0.02562 * 11 10 9 13 13 C 1.41157 * 120.15917 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00423 * 330.43533 * 13 12 11 15 15 C 1.39909 * 119.99810 * 150.43209 * 13 12 11 16 16 N 1.30872 * 120.00114 * 333.70465 * 15 13 12 17 17 Si 1.86799 * 119.99785 * 153.70544 * 15 13 12 18 18 H 1.48493 * 109.47349 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47176 * 239.99851 * 17 15 13 20 20 H 1.48501 * 109.47259 * 120.00226 * 17 15 13 21 21 C 1.40865 * 119.67702 * 0.25197 * 12 11 10 22 22 C 1.36381 * 119.82522 * 359.48493 * 21 12 11 23 23 C 1.52999 * 60.02824 * 107.50574 * 4 2 1 24 24 F 1.39909 * 117.49900 * 107.48314 * 23 4 2 25 25 F 1.39905 * 117.50156 * 252.47721 * 23 4 2 26 26 H 1.08997 * 109.47565 * 274.31654 * 1 2 3 27 27 H 1.09002 * 109.46892 * 34.31735 * 1 2 3 28 28 H 1.08998 * 109.46699 * 154.31082 * 1 2 3 29 29 H 0.97003 * 119.99678 * 4.97378 * 8 6 4 30 30 H 1.08005 * 119.91477 * 0.04328 * 10 9 8 31 31 H 1.08001 * 120.08418 * 180.02562 * 11 10 9 32 32 H 0.97001 * 119.99958 * 354.20473 * 16 15 13 33 33 H 1.07998 * 120.08705 * 179.72719 * 21 12 11 34 34 H 1.07997 * 119.91381 * 180.25325 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 0.7652 5 1 3.1714 -0.8749 1.2688 6 6 1.3720 -2.1407 1.4607 7 8 0.1638 -2.0526 1.4021 8 7 1.9416 -3.1506 2.1479 9 6 1.1469 -4.1501 2.7030 10 6 1.5447 -4.7774 3.8835 11 6 0.7719 -5.7576 4.4330 12 6 -0.4306 -6.1364 3.8047 13 6 -1.2357 -7.1504 4.3669 14 1 -0.7819 -7.9422 4.9444 15 6 -2.6215 -7.1298 4.1760 16 7 -3.2350 -5.9947 3.9567 17 14 -3.5961 -8.7223 4.2340 18 1 -2.6747 -9.8573 4.4944 19 1 -4.2820 -8.9306 2.9334 20 1 -4.6065 -8.6451 5.3195 21 6 -0.8228 -5.5024 2.6095 22 6 -0.0422 -4.5201 2.0749 23 6 2.2372 -1.1215 -0.7648 24 9 3.4376 -0.8060 -1.4104 25 9 1.4357 -2.0690 -1.4108 26 1 -0.3634 0.0773 1.0247 27 1 -0.3633 0.8488 -0.5794 28 1 -0.3633 -0.9261 -0.4455 29 1 2.9051 -3.1811 2.2558 30 1 2.4671 -4.4859 4.3640 31 1 1.0811 -6.2421 5.3473 32 1 -2.7440 -5.1599 4.0098 33 1 -1.7413 -5.7907 2.1198 34 1 -0.3436 -4.0302 1.1608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335329009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:21 Heat of formation + Delta-G solvation = -87.946976 kcal Electronic energy + Delta-G solvation = -21459.104109 eV Core-core repulsion = 17800.295439 eV Total energy + Delta-G solvation = -3658.808670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.83848 -47.50043 -40.06301 -37.85035 -36.13842 -34.64096 -33.06750 -29.74862 -29.28151 -28.36232 -25.42257 -23.63570 -21.76297 -21.46833 -20.76785 -19.59753 -18.16234 -17.93759 -17.29929 -16.46940 -16.32418 -15.88462 -14.77782 -14.45942 -14.23000 -14.10011 -14.07175 -13.76038 -13.65280 -13.37926 -12.89502 -12.65939 -12.45343 -12.38848 -12.08146 -11.97577 -11.41316 -11.15017 -11.04910 -10.83017 -10.42919 -10.16023 -10.03846 -9.77556 -9.39587 -9.11283 -8.77553 -7.79932 -7.29635 -7.08492 -4.40171 2.08471 2.71212 2.78816 2.85850 3.16064 3.21308 3.33125 3.34978 3.50940 3.93998 4.02010 4.34811 4.42502 4.56047 4.86773 5.01420 5.30531 5.41114 5.46137 5.78099 5.91955 5.96491 6.20392 6.40822 6.59470 6.76240 6.85175 7.05970 7.33206 7.41615 7.70936 7.72719 7.80387 8.06313 8.17817 8.24805 8.55503 8.74508 8.87304 10.05108 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.030881 B = 0.003956 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.497744 B = 7076.587558 C = 7442.928386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 H 0.136 0.864 4 C -0.190 4.190 5 H 0.145 0.855 6 C 0.525 3.475 7 O -0.510 6.510 8 N -0.640 5.640 9 C -0.020 4.020 10 C -0.092 4.092 11 C -0.215 4.215 12 C 0.094 3.906 13 C -0.522 4.522 14 H 0.077 0.923 15 C 0.038 3.962 16 N -0.793 5.793 17 Si 1.069 2.931 18 H -0.276 1.276 19 H -0.274 1.274 20 H -0.278 1.278 21 C -0.205 4.205 22 C -0.067 4.067 23 C 0.216 3.784 24 F -0.159 7.159 25 F -0.148 7.148 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.396 0.604 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.300 0.700 33 H 0.105 0.895 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.386 9.368 -5.651 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.128 4.128 3 H 0.153 0.847 4 C -0.212 4.212 5 H 0.162 0.838 6 C 0.310 3.690 7 O -0.386 6.386 8 N -0.282 5.282 9 C -0.112 4.112 10 C -0.112 4.112 11 C -0.235 4.235 12 C 0.091 3.909 13 C -0.550 4.550 14 H 0.095 0.905 15 C -0.184 4.184 16 N -0.415 5.415 17 Si 0.893 3.107 18 H -0.201 1.201 19 H -0.199 1.199 20 H -0.204 1.204 21 C -0.225 4.225 22 C -0.086 4.086 23 C 0.178 3.822 24 F -0.139 7.139 25 F -0.128 7.128 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.230 0.770 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.976 8.825 -5.952 12.727 hybrid contribution 2.459 0.605 0.137 2.536 sum 9.435 9.430 -5.815 14.552 Atomic orbital electron populations 1.21438 0.89226 1.02924 1.04133 1.23722 0.99030 0.94353 0.95692 0.84663 1.23841 1.03677 1.01052 0.92672 0.83755 1.19087 0.88033 0.81240 0.80640 1.90737 1.13747 1.73707 1.60398 1.42862 1.09585 1.22896 1.52819 1.17062 0.97339 0.98124 0.98650 1.20094 0.98952 0.98498 0.93704 1.20562 0.99477 1.02342 1.01121 1.17733 0.91907 0.90821 0.90440 1.20548 0.94031 1.09425 1.31022 0.90490 1.27020 0.96341 1.03635 0.91397 1.70404 1.41511 1.00363 1.29229 0.83596 0.75528 0.73467 0.78125 1.20129 1.19924 1.20400 1.20800 1.02013 1.01868 0.97806 1.20396 0.93674 0.95992 0.98579 1.19889 0.81044 0.94805 0.86415 1.93036 1.45051 1.92594 1.83234 1.93068 1.71825 1.64950 1.82944 0.89713 0.92340 0.90339 0.77047 0.88958 0.88427 0.88688 0.87694 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.40 37.16 0.31 -1.18 16 2 C -0.11 -1.17 6.39 -90.58 -0.58 -1.75 16 3 H 0.14 1.01 8.14 -51.92 -0.42 0.59 16 4 C -0.19 -2.27 6.17 -91.77 -0.57 -2.83 16 5 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 6 C 0.52 8.78 6.97 -10.98 -0.08 8.71 16 7 O -0.51 -10.31 10.63 5.55 0.06 -10.25 16 8 N -0.64 -10.87 5.32 -9.74 -0.05 -10.92 16 9 C -0.02 -0.43 6.33 -83.57 -0.53 -0.96 16 10 C -0.09 -1.97 9.89 -39.79 -0.39 -2.37 16 11 C -0.22 -5.14 9.74 -39.26 -0.38 -5.52 16 12 C 0.09 2.48 5.18 -106.80 -0.55 1.93 16 13 C -0.52 -13.82 8.94 -37.85 -0.34 -14.16 16 14 H 0.08 1.97 7.97 -52.49 -0.42 1.56 16 15 C 0.04 0.98 4.87 -17.34 -0.08 0.90 16 16 N -0.79 -21.41 12.49 55.55 0.69 -20.71 16 17 Si 1.07 21.71 30.01 -169.99 -5.10 16.60 16 18 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 21 C -0.21 -5.36 8.00 -39.26 -0.31 -5.67 16 22 C -0.07 -1.61 8.58 -39.79 -0.34 -1.95 16 23 C 0.22 2.73 5.14 -26.70 -0.14 2.60 16 24 F -0.16 -1.91 17.60 2.25 0.04 -1.87 16 25 F -0.15 -2.31 16.04 2.25 0.04 -2.28 16 26 H 0.08 1.17 7.26 -51.93 -0.38 0.79 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.18 6.22 -51.93 -0.32 0.86 16 29 H 0.40 5.18 8.80 -40.82 -0.36 4.82 16 30 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.30 8.42 6.97 -40.82 -0.28 8.13 16 33 H 0.10 2.85 6.86 -52.49 -0.36 2.49 16 34 H 0.11 2.61 6.24 -52.49 -0.33 2.28 16 LS Contribution 298.88 15.07 4.50 4.50 Total: -1.00 -29.67 298.88 -7.16 -36.83 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -3.36 Total: 10.37 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.98 Total: -22.27 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.64 Total: -31.64 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.06 Total: -10.25 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.08 Total: -4.15 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.10 Total: 16.60 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.67 -7.16 -36.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335329009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.115 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds