Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 115.56329 * 2 1 4 4 C 1.52997 * 117.49901 * 214.31387 * 2 1 3 5 5 H 1.09005 * 117.50020 * 0.02562 * 4 2 1 6 6 C 1.50698 * 117.50057 * 145.02310 * 4 2 1 7 7 O 1.21282 * 119.99812 * 359.90559 * 6 4 2 8 8 N 1.34772 * 120.00079 * 179.91360 * 6 4 2 9 9 C 1.39121 * 120.00361 * 174.16207 * 8 6 4 10 10 C 1.38649 * 120.28130 * 335.23666 * 9 8 6 11 11 C 1.38226 * 120.03363 * 179.97438 * 10 9 8 12 12 C 1.38865 * 120.61396 * 0.02998 * 11 10 9 13 13 C 1.36467 * 120.57867 * 359.70962 * 12 11 10 14 14 C 1.40729 * 119.94015 * 0.54073 * 13 12 11 15 15 C 1.41076 * 120.29740 * 179.73655 * 14 13 12 16 16 H 1.08003 * 119.99593 * 154.09497 * 15 14 13 17 17 C 1.39952 * 120.00123 * 334.09438 * 15 14 13 18 18 N 1.30845 * 120.00125 * 354.33452 * 17 15 14 19 19 Si 1.86796 * 119.99810 * 174.60263 * 17 15 14 20 20 H 1.48507 * 109.47179 * 179.72800 * 19 17 15 21 21 H 1.48500 * 109.47455 * 299.72659 * 19 17 15 22 22 H 1.48507 * 109.47315 * 59.73085 * 19 17 15 23 23 C 1.53000 * 60.03061 * 252.51980 * 4 2 1 24 24 F 1.39901 * 117.50185 * 107.47563 * 23 4 2 25 25 F 1.39901 * 117.50053 * 252.49915 * 23 4 2 26 26 H 1.08996 * 109.46941 * 205.69087 * 1 2 3 27 27 H 1.08998 * 109.46721 * 325.68875 * 1 2 3 28 28 H 1.08998 * 109.47348 * 85.68771 * 1 2 3 29 29 H 0.97004 * 119.99792 * 354.15708 * 8 6 4 30 30 H 1.07997 * 119.98507 * 359.97438 * 10 9 8 31 31 H 1.08002 * 119.69284 * 180.02562 * 11 10 9 32 32 H 1.08006 * 119.70951 * 179.97438 * 12 11 10 33 33 H 1.08004 * 120.02689 * 180.28483 * 13 12 11 34 34 H 0.97005 * 120.00516 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 1 1.6112 -1.8582 -1.2688 6 6 3.5293 -0.7811 -1.4608 7 8 3.9710 0.3470 -1.4025 8 7 4.1946 -1.7306 -2.1479 9 6 5.3214 -1.3914 -2.8900 10 6 5.4868 -0.0968 -3.3580 11 6 6.6086 0.2347 -4.0944 12 6 7.5783 -0.7192 -4.3739 13 6 7.4436 -1.9995 -3.9212 14 6 6.3083 -2.3644 -3.1738 15 6 6.1587 -3.6872 -2.7069 16 1 5.5625 -3.8855 -1.8284 17 6 6.7826 -4.7425 -3.3820 18 7 7.4121 -4.5182 -4.5070 19 14 6.7105 -6.4724 -2.6809 20 1 7.4377 -7.4024 -3.5818 21 1 7.3429 -6.4888 -1.3374 22 1 5.2933 -6.9013 -2.5662 23 6 2.2367 -1.1218 0.7650 24 9 1.4340 -2.0685 1.4106 25 9 3.4371 -0.8070 1.4110 26 1 -0.3633 -0.9260 0.4455 27 1 -0.3633 0.8488 0.5793 28 1 -0.3634 0.0773 -1.0247 29 1 3.8878 -2.6505 -2.1250 30 1 4.7387 0.6530 -3.1470 31 1 6.7320 1.2449 -4.4558 32 1 8.4489 -0.4443 -4.9510 33 1 8.2055 -2.7331 -4.1399 34 1 7.8449 -5.2495 -4.9748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335491780.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = -84.142956 kcal Electronic energy + Delta-G solvation = -21619.188463 eV Core-core repulsion = 17960.544747 eV Total energy + Delta-G solvation = -3658.643716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.71543 -47.36825 -39.85682 -37.61531 -36.09392 -33.88586 -33.70905 -29.67398 -29.35071 -28.19321 -25.42249 -23.97033 -21.67966 -21.18998 -20.51117 -19.53834 -18.03423 -17.39020 -17.06742 -16.36230 -16.06271 -15.93022 -15.12044 -14.37745 -14.21353 -14.07235 -13.94493 -13.64186 -13.44208 -13.17388 -13.00487 -12.91241 -12.64749 -12.29078 -11.91703 -11.75519 -11.37081 -11.18120 -11.08531 -10.75254 -10.52630 -10.22360 -9.97608 -9.79104 -9.44161 -9.34364 -8.91651 -7.40984 -7.00680 -6.67046 -4.46502 2.21678 2.75501 2.87237 2.99895 3.01436 3.03143 3.18430 3.44902 3.69179 3.84712 4.13305 4.42436 4.56077 4.62166 4.94508 5.11992 5.30623 5.43024 5.53000 5.64048 5.70664 5.96426 6.32191 6.48671 6.56711 6.83769 6.99438 7.13958 7.24494 7.58500 7.69654 7.92776 8.05512 8.08949 8.34372 8.52918 8.72902 8.78246 8.94280 10.12204 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.005733 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.097450 B = 4882.970056 C = 6176.099058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.115 4.115 3 H 0.143 0.857 4 C -0.185 4.185 5 H 0.147 0.853 6 C 0.524 3.476 7 O -0.526 6.526 8 N -0.624 5.624 9 C 0.013 3.987 10 C -0.097 4.097 11 C -0.221 4.221 12 C -0.117 4.117 13 C -0.149 4.149 14 C 0.096 3.904 15 C -0.462 4.462 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.798 5.798 19 Si 0.913 3.087 20 H -0.277 1.277 21 H -0.264 1.264 22 H -0.265 1.265 23 C 0.219 3.781 24 F -0.157 7.157 25 F -0.149 7.149 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.406 0.594 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 2.108 5.463 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.134 4.134 3 H 0.161 0.839 4 C -0.208 4.208 5 H 0.164 0.836 6 C 0.309 3.691 7 O -0.404 6.404 8 N -0.264 5.264 9 C -0.080 4.080 10 C -0.117 4.117 11 C -0.241 4.241 12 C -0.136 4.136 13 C -0.169 4.169 14 C 0.092 3.908 15 C -0.492 4.492 16 H 0.092 0.908 17 C -0.143 4.143 18 N -0.424 5.424 19 Si 0.738 3.262 20 H -0.202 1.202 21 H -0.189 1.189 22 H -0.190 1.190 23 C 0.182 3.818 24 F -0.137 7.137 25 F -0.130 7.130 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.242 0.758 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.154 0.846 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.340 2.724 5.352 11.958 hybrid contribution -0.006 -1.544 0.384 1.591 sum -10.347 1.180 5.736 11.889 Atomic orbital electron populations 1.21430 0.90289 1.03453 1.03433 1.23729 0.97227 0.96295 0.96184 0.83935 1.23886 1.00045 1.04212 0.92639 0.83562 1.19061 0.84384 0.85832 0.79834 1.90648 1.67361 1.21211 1.61167 1.42809 1.26932 1.11144 1.45542 1.17784 0.89371 0.95935 1.04930 1.20735 0.98264 0.94949 0.97766 1.20347 0.97872 0.98025 1.07891 1.20543 0.98007 0.94386 1.00650 1.21272 0.98579 0.95029 1.02016 1.17407 0.89020 0.91879 0.92480 1.19319 1.27974 0.90953 1.10993 0.90821 1.25873 0.93095 1.01512 0.93846 1.69747 1.25993 1.34166 1.12528 0.86284 0.79443 0.80724 0.79789 1.20219 1.18909 1.19016 1.19894 0.81426 0.93922 0.86604 1.93010 1.71988 1.65519 1.83182 1.93089 1.44407 1.92461 1.83000 0.91263 0.90776 0.90492 0.75836 0.86661 0.89176 0.89330 0.84584 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 10.16 37.16 0.38 -0.69 16 2 C -0.11 -1.35 5.91 -90.58 -0.54 -1.89 16 3 H 0.14 1.79 7.67 -51.93 -0.40 1.40 16 4 C -0.19 -2.55 5.89 -91.77 -0.54 -3.09 16 5 H 0.15 1.57 8.14 -51.93 -0.42 1.15 16 6 C 0.52 9.84 7.04 -10.99 -0.08 9.76 16 7 O -0.53 -11.43 13.43 5.56 0.07 -11.36 16 8 N -0.62 -12.70 5.09 -9.48 -0.05 -12.75 16 9 C 0.01 0.32 6.46 -83.17 -0.54 -0.21 16 10 C -0.10 -2.34 8.71 -39.43 -0.34 -2.68 16 11 C -0.22 -5.17 10.04 -39.35 -0.39 -5.57 16 12 C -0.12 -2.78 9.97 -39.99 -0.40 -3.18 16 13 C -0.15 -3.83 8.66 -39.28 -0.34 -4.17 16 14 C 0.10 2.47 5.62 -106.65 -0.60 1.87 16 15 C -0.46 -11.50 8.42 -37.86 -0.32 -11.82 16 16 H 0.07 1.73 7.08 -52.48 -0.37 1.36 16 17 C 0.07 1.75 5.36 -17.33 -0.09 1.66 16 18 N -0.80 -19.68 10.41 55.55 0.58 -19.10 16 19 Si 0.91 17.91 29.56 -169.99 -5.03 12.88 16 20 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 23 C 0.22 3.07 5.14 -26.70 -0.14 2.94 16 24 F -0.16 -2.07 16.50 2.25 0.04 -2.03 16 25 F -0.15 -2.55 17.13 2.25 0.04 -2.51 16 26 H 0.07 0.56 7.10 -51.93 -0.37 0.19 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.41 7.42 7.53 -40.82 -0.31 7.11 16 30 H 0.12 2.72 5.79 -52.49 -0.30 2.41 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 33 H 0.14 3.58 5.79 -52.48 -0.30 3.28 16 34 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -28.76 300.61 -7.06 -35.81 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -3.30 Total: 11.59 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -3.94 Total: -17.06 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.53 Total: -31.85 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.08 Total: -4.54 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.76 -7.06 -35.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335491780.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.328 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds