Wall clock time and date at job start Tue Mar 31 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.43893 * 2 1 4 4 C 1.50820 * 109.43853 * 240.08686 * 2 1 3 5 5 C 1.38822 * 117.76917 * 49.08263 * 4 2 1 6 6 C 1.38183 * 120.54258 * 178.86028 * 5 4 2 7 7 F 1.35101 * 120.15525 * 180.02562 * 6 5 4 8 8 C 1.38451 * 119.69179 * 0.02562 * 6 5 4 9 9 C 1.38097 * 119.77207 * 0.24986 * 8 6 5 10 10 F 1.35099 * 119.71579 * 179.97438 * 9 8 6 11 11 C 1.37652 * 122.34277 * 228.41254 * 4 2 1 12 12 C 1.50607 * 122.85879 * 1.46171 * 11 4 2 13 13 C 1.52785 * 110.86493 * 339.84729 * 12 11 4 14 14 N 1.46672 * 109.41671 * 119.83895 * 2 1 3 15 15 C 1.34777 * 121.32554 * 344.47220 * 14 2 1 16 16 O 1.21681 * 120.00317 * 4.54404 * 15 14 2 17 17 C 1.46378 * 119.99589 * 184.54690 * 15 14 2 18 18 H 1.07996 * 120.00280 * 8.48804 * 17 15 14 19 19 C 1.40045 * 120.00094 * 188.48823 * 17 15 14 20 20 N 1.30683 * 119.99789 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00388 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46803 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46983 * 120.00015 * 21 19 17 24 24 H 1.48492 * 109.47348 * 240.00322 * 21 19 17 25 25 H 1.08999 * 109.46981 * 188.09727 * 1 2 3 26 26 H 1.08999 * 109.46976 * 308.10258 * 1 2 3 27 27 H 1.09003 * 109.47065 * 68.09761 * 1 2 3 28 28 H 1.08004 * 119.72672 * 358.83685 * 5 4 2 29 29 H 1.08001 * 120.11623 * 180.24794 * 8 6 5 30 30 H 1.08999 * 109.19616 * 219.49351 * 12 11 4 31 31 H 1.08999 * 109.19943 * 100.20871 * 12 11 4 32 32 H 1.09007 * 109.76764 * 167.06025 * 13 12 11 33 33 H 1.08996 * 109.77712 * 287.79683 * 13 12 11 34 34 H 0.96996 * 119.99867 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0319 -0.7092 -1.2328 5 6 1.4885 -0.3424 -2.4564 6 6 1.9233 -0.9383 -3.6248 7 9 1.3893 -0.5749 -4.8115 8 6 2.9086 -1.9096 -3.5738 9 6 3.4452 -2.2787 -2.3561 10 9 4.4063 -3.2270 -2.3076 11 6 3.0049 -1.6814 -1.1782 12 6 3.6277 -2.1427 0.1131 13 6 3.4303 -1.1024 1.2146 14 7 2.0176 -0.6883 1.1999 15 6 1.2043 -0.9332 2.2464 16 8 0.0215 -0.6564 2.1756 17 6 1.7440 -1.5322 3.4681 18 1 2.8110 -1.6517 3.5852 19 6 0.8769 -1.9504 4.4851 20 7 -0.4142 -1.8063 4.3432 21 14 1.5655 -2.7155 6.0439 22 1 3.0471 -2.7660 5.9577 23 1 1.1659 -1.8957 7.2160 24 1 1.0309 -4.0923 6.1975 25 1 -0.3633 -1.0174 0.1448 26 1 -0.3633 0.6341 0.8087 27 1 -0.3633 0.3834 -0.9535 28 1 0.7193 0.4148 -2.4954 29 1 3.2563 -2.3770 -4.4832 30 1 4.6947 -2.3036 -0.0409 31 1 3.1650 -3.0810 0.4191 32 1 3.6765 -1.5391 2.1825 33 1 4.0694 -0.2399 1.0260 34 1 -1.0149 -2.0963 5.0475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336570948.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:33 Heat of formation + Delta-G solvation = -88.797183 kcal Electronic energy + Delta-G solvation = -22158.600534 eV Core-core repulsion = 18499.754996 eV Total energy + Delta-G solvation = -3658.845538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.96275 -48.94013 -39.93859 -37.58067 -34.87284 -33.35432 -32.37821 -31.11340 -29.29373 -27.42890 -26.08888 -24.22650 -23.21446 -21.44111 -20.98154 -19.06169 -17.66005 -17.14478 -16.52058 -16.07370 -15.86365 -15.67096 -15.31495 -15.14885 -14.63143 -14.59746 -14.32618 -13.82036 -13.42097 -12.88109 -12.72193 -12.52039 -12.11335 -11.96394 -11.79162 -11.49970 -11.23631 -11.08353 -10.92549 -10.86351 -10.78662 -10.56624 -10.28535 -9.99942 -8.94395 -8.78143 -8.43456 -7.38563 -7.31356 -6.24440 -4.72943 1.02812 1.07555 3.07860 3.16855 3.20197 3.40227 3.89127 3.97705 4.26409 4.44537 4.54674 4.61094 4.78748 4.92710 5.09063 5.50701 5.57065 5.64194 5.71751 5.79559 5.84070 5.91007 5.94097 6.07039 6.12583 6.33453 6.38320 6.46798 6.50391 6.84840 6.90802 7.24157 7.37368 7.46116 8.03151 8.24555 8.94579 9.30686 10.47757 10.66054 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.005257 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.771789 B = 5324.900403 C = 6105.666266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.187 3.813 3 H 0.068 0.932 4 C -0.022 4.022 5 C -0.158 4.158 6 C 0.118 3.882 7 F -0.136 7.136 8 C -0.199 4.199 9 C 0.121 3.879 10 F -0.133 7.133 11 C -0.103 4.103 12 C -0.098 4.098 13 C 0.122 3.878 14 N -0.639 5.639 15 C 0.563 3.437 16 O -0.565 6.565 17 C -0.543 4.543 18 H 0.073 0.927 19 C 0.089 3.911 20 N -0.767 5.767 21 Si 0.906 3.094 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.025 0.975 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.523 0.629 -10.754 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.082 3.918 3 H 0.086 0.914 4 C -0.024 4.024 5 C -0.177 4.177 6 C 0.099 3.901 7 F -0.115 7.115 8 C -0.219 4.219 9 C 0.102 3.898 10 F -0.111 7.111 11 C -0.104 4.104 12 C -0.136 4.136 13 C -0.002 4.002 14 N -0.378 5.378 15 C 0.370 3.630 16 O -0.447 6.447 17 C -0.580 4.580 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.396 5.396 21 Si 0.731 3.269 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.202 1.202 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.044 0.956 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.069 0.931 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.668 0.734 -10.717 12.643 hybrid contribution 0.570 -0.666 0.248 0.911 sum 7.238 0.068 -10.469 12.727 Atomic orbital electron populations 1.22207 0.91524 1.04844 0.99525 1.19778 0.96200 0.93683 0.82123 0.91416 1.20005 0.92842 0.94008 0.95509 1.21189 1.02890 1.03189 0.90476 1.17088 0.95168 0.96790 0.81056 1.91502 1.84900 1.90643 1.44430 1.20817 1.00908 1.01923 0.98238 1.17347 0.89498 0.89698 0.93280 1.91486 1.60737 1.61690 1.97207 1.19724 0.98420 0.97702 0.94567 1.20857 0.99944 1.00976 0.91805 1.21421 0.84042 0.95636 0.99126 1.48340 1.10128 1.63166 1.16122 1.18187 0.84882 0.78216 0.81747 1.90609 1.16093 1.56105 1.81905 1.20984 0.93936 1.42895 1.00156 0.90884 1.25700 0.94416 0.94003 0.98981 1.69999 1.02867 1.34908 1.31807 0.86338 0.79992 0.79031 0.81579 1.18708 1.20126 1.20176 0.91408 0.89239 0.95631 0.83831 0.83900 0.90322 0.89599 0.87854 0.93146 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 7.45 37.16 0.28 -2.19 16 2 C 0.19 3.48 3.49 -68.93 -0.24 3.24 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 4 C -0.02 -0.36 5.43 -104.56 -0.57 -0.93 16 5 C -0.16 -2.28 8.99 -39.39 -0.35 -2.63 16 6 C 0.12 1.63 7.30 -39.52 -0.29 1.34 16 7 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 8 C -0.20 -2.63 10.00 -39.55 -0.40 -3.03 16 9 C 0.12 1.76 7.21 -39.27 -0.28 1.47 16 10 F -0.13 -1.88 16.40 2.25 0.04 -1.84 16 11 C -0.10 -1.64 5.77 -104.52 -0.60 -2.24 16 12 C -0.10 -1.53 5.57 -28.04 -0.16 -1.68 16 13 C 0.12 2.13 6.35 -3.76 -0.02 2.10 16 14 N -0.64 -13.61 2.94 -168.43 -0.49 -14.11 16 15 C 0.56 14.87 7.48 -12.99 -0.10 14.77 16 16 O -0.56 -16.55 10.82 5.21 0.06 -16.49 16 17 C -0.54 -14.30 8.84 -35.63 -0.31 -14.62 16 18 H 0.07 1.75 5.80 -52.49 -0.30 1.45 16 19 C 0.09 2.35 5.50 -17.36 -0.10 2.25 16 20 N -0.77 -21.87 11.86 55.55 0.66 -21.21 16 21 Si 0.91 19.23 29.56 -169.99 -5.02 14.21 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H 0.07 1.56 7.16 -51.93 -0.37 1.19 16 26 H 0.09 2.01 6.48 -51.93 -0.34 1.67 16 27 H 0.03 0.41 6.33 -51.93 -0.33 0.08 16 28 H 0.14 1.86 6.63 -52.48 -0.35 1.51 16 29 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.08 1.04 7.74 -51.93 -0.40 0.64 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.10 1.85 5.44 -51.92 -0.28 1.57 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 LS Contribution 285.90 15.07 4.31 4.31 Total: -1.00 -30.06 285.90 -6.76 -36.82 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.20 Total: 2.24 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.14 Total: -2.14 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.16 Total: -35.31 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.06 Total: -16.49 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.06 -6.76 -36.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336570948.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.973 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds