Wall clock time and date at job start Tue Mar 31 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46893 * 2 1 4 4 C 1.52997 * 109.47095 * 240.00301 * 2 1 3 5 5 C 1.50703 * 109.47220 * 64.99763 * 4 2 1 6 6 C 1.38238 * 119.98563 * 269.72678 * 5 4 2 7 7 C 1.38216 * 120.00970 * 179.72872 * 6 5 4 8 8 C 1.38350 * 119.98850 * 0.54101 * 7 6 5 9 9 Cl 1.73599 * 120.01235 * 179.70713 * 8 7 6 10 10 C 1.38351 * 119.97428 * 359.73253 * 8 7 6 11 11 C 1.38211 * 119.98240 * 359.97438 * 10 8 7 12 12 C 1.50694 * 109.47412 * 119.99933 * 2 1 3 13 13 O 1.21295 * 119.99809 * 105.71229 * 12 2 1 14 14 N 1.34779 * 119.99988 * 285.71584 * 12 2 1 15 15 C 1.46498 * 119.99624 * 185.27139 * 14 12 2 16 16 C 1.37094 * 120.00277 * 5.27757 * 14 12 2 17 17 H 1.08004 * 119.99842 * 19.47834 * 16 14 12 18 18 C 1.38948 * 120.00221 * 199.49132 * 16 14 12 19 19 N 1.31412 * 119.99761 * 351.23679 * 18 16 14 20 20 Si 1.86792 * 120.00207 * 171.24258 * 18 16 14 21 21 H 1.48496 * 109.47420 * 59.99568 * 20 18 16 22 22 H 1.48507 * 109.47085 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47320 * 299.99473 * 20 18 16 24 24 H 1.09001 * 109.47358 * 53.36104 * 1 2 3 25 25 H 1.08997 * 109.46518 * 173.35960 * 1 2 3 26 26 H 1.08998 * 109.47126 * 293.35390 * 1 2 3 27 27 H 1.08998 * 109.47139 * 184.99339 * 4 2 1 28 28 H 1.09000 * 109.47328 * 304.99518 * 4 2 1 29 29 H 1.07993 * 119.99636 * 359.97438 * 6 5 4 30 30 H 1.08005 * 120.00410 * 180.27156 * 7 6 5 31 31 H 1.07996 * 120.00971 * 179.97438 * 10 8 7 32 32 H 1.08012 * 119.98993 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.47564 * 234.49713 * 15 14 12 34 34 H 1.09003 * 109.47487 * 354.50453 * 15 14 12 35 35 H 1.09009 * 109.46699 * 114.50112 * 15 14 12 36 36 H 0.97002 * 120.00237 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 6 0.4380 -0.2090 -3.1028 7 6 0.0692 0.5084 -4.2252 8 6 0.9097 1.4853 -4.7285 9 17 0.4506 2.3814 -6.1426 10 6 2.1165 1.7473 -4.1046 11 6 2.4813 1.0335 -2.9788 12 6 2.0324 -0.7104 1.2304 13 8 2.5028 -1.8245 1.1378 14 7 1.9590 -0.1077 2.4337 15 6 2.5510 -0.7479 3.6109 16 6 1.3303 1.1045 2.5561 17 1 0.6347 1.4310 1.7971 18 6 1.5882 1.9130 3.6563 19 7 2.2965 1.4488 4.6611 20 14 0.9279 3.6595 3.7072 21 1 -0.5544 3.6311 3.6224 22 1 1.3382 4.3070 4.9791 23 1 1.4745 4.4290 2.5607 24 1 -0.3634 0.6133 -0.8246 25 1 -0.3632 -1.0208 -0.1188 26 1 -0.3633 0.4074 0.9435 27 1 3.1263 -0.7993 -1.2057 28 1 1.6055 -1.7197 -1.2952 29 1 -0.2159 -0.9749 -2.7127 30 1 -0.8729 0.3033 -4.7118 31 1 2.7732 2.5095 -4.4973 32 1 3.4236 1.2377 -2.4919 33 1 1.7971 -0.8388 4.3928 34 1 2.9156 -1.7390 3.3407 35 1 3.3809 -0.1423 3.9750 36 1 2.4762 2.0130 5.4294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339399588.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:42 Heat of formation + Delta-G solvation = -20.412987 kcal Electronic energy + Delta-G solvation = -19576.732658 eV Core-core repulsion = 16472.649161 eV Total energy + Delta-G solvation = -3104.083497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.64317 -38.54521 -36.59237 -34.92049 -34.14078 -31.47883 -31.08222 -30.42950 -26.60401 -26.12543 -24.73931 -22.86560 -22.31250 -20.58900 -18.87172 -17.06977 -16.99259 -16.19307 -15.51270 -15.05922 -14.50290 -14.30737 -14.08320 -13.58948 -13.50706 -13.41864 -13.12190 -12.75259 -12.36511 -11.85685 -11.60665 -11.49932 -11.44285 -11.29134 -11.13326 -10.98143 -10.83278 -10.69984 -10.50008 -10.43319 -10.31508 -10.07749 -9.07284 -9.02560 -8.53131 -8.26309 -7.84135 -6.32415 -3.95635 1.16931 1.30446 2.08869 3.08640 3.16741 3.17600 3.63969 3.89911 4.04296 4.72488 4.77877 4.87264 5.05544 5.15868 5.33165 5.37690 5.53798 5.65876 5.71511 5.86298 5.93618 6.16033 6.21761 6.25291 6.28665 6.35384 6.49386 6.65559 6.69755 6.84596 6.86525 6.94315 7.19510 7.39852 7.54510 7.78260 8.38129 9.04984 9.53541 9.93372 10.61630 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.004391 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.702883 B = 6374.657228 C = 7292.121430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.088 0.912 4 C -0.063 4.063 5 C -0.059 4.059 6 C -0.103 4.103 7 C -0.111 4.111 8 C -0.046 4.046 9 Cl -0.084 7.084 10 C -0.109 4.109 11 C -0.105 4.105 12 C 0.456 3.544 13 O -0.617 6.617 14 N -0.444 5.444 15 C 0.114 3.886 16 C -0.337 4.337 17 H 0.105 0.895 18 C 0.038 3.962 19 N -0.872 5.872 20 Si 0.920 3.080 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.049 0.951 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 1.890 -14.282 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.107 0.893 4 C -0.101 4.101 5 C -0.059 4.059 6 C -0.122 4.122 7 C -0.129 4.129 8 C -0.072 4.072 9 Cl -0.055 7.055 10 C -0.128 4.128 11 C -0.123 4.123 12 C 0.244 3.756 13 O -0.505 6.505 14 N -0.161 5.161 15 C -0.029 4.029 16 C -0.464 4.464 17 H 0.122 0.878 18 C -0.166 4.166 19 N -0.511 5.511 20 Si 0.746 3.254 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.752 1.514 -14.184 14.528 hybrid contribution -0.438 1.214 0.128 1.297 sum -3.190 2.728 -14.056 14.669 Atomic orbital electron populations 1.21905 0.94309 1.01399 1.02799 1.20896 0.96789 1.00441 0.92373 0.89350 1.20479 1.01875 0.98070 0.89626 1.20220 0.93832 0.95659 0.96216 1.21089 0.96478 0.99823 0.94766 1.21009 0.99457 0.95499 0.96978 1.20865 0.96888 0.97741 0.91699 1.98350 1.92469 1.74719 1.39950 1.21013 0.95216 1.00429 0.96118 1.21107 1.00296 0.95498 0.95441 1.19959 0.83929 0.87067 0.84628 1.90506 1.52853 1.20805 1.86309 1.43640 1.48068 1.18493 1.05854 1.21634 0.99341 0.95051 0.86849 1.19827 1.23653 0.93752 1.09201 0.87772 1.25410 0.96204 0.99676 0.95360 1.70135 1.38114 1.36084 1.06718 0.86103 0.79166 0.82206 0.77881 1.19784 1.20767 1.19687 0.92815 0.93103 0.90651 0.90554 0.90300 0.85031 0.85284 0.85242 0.84961 0.93266 0.94631 0.90388 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.18 37.16 0.30 -2.18 16 2 C -0.08 -1.58 1.89 -91.77 -0.17 -1.75 16 3 H 0.09 1.70 7.64 -51.93 -0.40 1.30 16 4 C -0.06 -1.02 4.16 -27.88 -0.12 -1.13 16 5 C -0.06 -0.81 4.71 -104.62 -0.49 -1.30 16 6 C -0.10 -1.28 8.16 -39.59 -0.32 -1.60 16 7 C -0.11 -1.28 9.83 -39.55 -0.39 -1.67 16 8 C -0.05 -0.54 6.32 -39.50 -0.25 -0.79 16 9 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.42 16 10 C -0.11 -1.30 9.83 -39.55 -0.39 -1.68 16 11 C -0.11 -1.35 9.70 -39.59 -0.38 -1.73 16 12 C 0.46 10.82 6.89 -10.99 -0.08 10.74 16 13 O -0.62 -16.04 15.43 5.54 0.09 -15.95 16 14 N -0.44 -11.22 3.03 -122.19 -0.37 -11.59 16 15 C 0.11 2.87 8.93 59.85 0.53 3.41 16 16 C -0.34 -8.35 8.48 -14.94 -0.13 -8.47 16 17 H 0.10 2.40 4.76 -52.48 -0.25 2.15 16 18 C 0.04 0.94 5.46 -17.47 -0.10 0.85 16 19 N -0.87 -22.52 9.76 55.50 0.54 -21.98 16 20 Si 0.92 19.17 29.56 -169.99 -5.03 14.14 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H 0.05 0.79 6.73 -51.93 -0.35 0.44 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.40 5.69 -51.93 -0.30 1.11 16 27 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 28 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 29 H 0.13 1.47 8.05 -52.49 -0.42 1.04 16 30 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.05 1.25 7.71 -51.93 -0.40 0.85 16 34 H 0.04 0.87 6.91 -51.93 -0.36 0.51 16 35 H 0.08 2.03 6.52 -51.92 -0.34 1.69 16 36 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -27.95 311.34 -8.03 -35.98 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.47 Total: 4.46 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.98 Total: -7.33 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.17 Total: -33.57 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.09 Total: -15.95 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.95 -8.03 -35.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339399588.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.565 kcal (2) G-P(sol) polarization free energy of solvation -27.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds