Wall clock time and date at job start Tue Mar 31 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47454 * 2 1 4 4 S 1.81000 * 109.47236 * 239.99474 * 2 1 3 5 5 C 1.76204 * 99.99786 * 64.99957 * 4 2 1 6 6 N 1.32389 * 126.25914 * 0.03042 * 5 4 2 7 7 N 1.28516 * 110.20242 * 179.97438 * 6 5 4 8 8 C 1.33098 * 109.74574 * 359.97438 * 7 6 5 9 9 C 1.39776 * 126.56257 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99778 * 186.09356 * 9 8 7 11 11 C 1.40085 * 120.00068 * 6.08606 * 9 8 7 12 12 N 1.30808 * 119.99942 * 184.12744 * 11 9 8 13 13 Si 1.86799 * 119.99669 * 4.13543 * 11 9 8 14 14 H 1.48509 * 109.46950 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47355 * 299.99259 * 13 11 9 16 16 H 1.48501 * 109.47215 * 59.99928 * 13 11 9 17 17 N 1.36671 * 126.25846 * 180.29350 * 5 4 2 18 18 C 1.46504 * 127.15199 * 0.04162 * 17 5 4 19 19 C 1.50707 * 109.47281 * 119.99519 * 2 1 3 20 20 O 1.20762 * 119.99880 * 94.99937 * 19 2 1 21 21 C 1.50703 * 119.99874 * 275.00033 * 19 2 1 22 22 C 1.53005 * 117.49724 * 223.61824 * 21 19 2 23 23 C 1.52997 * 117.49584 * 154.99915 * 21 19 2 24 24 H 1.09007 * 109.47089 * 300.00629 * 1 2 3 25 25 H 1.09002 * 109.47040 * 60.00201 * 1 2 3 26 26 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00392 * 354.84969 * 12 11 9 28 28 H 1.09000 * 109.46642 * 270.17152 * 18 17 5 29 29 H 1.08991 * 109.47275 * 30.17219 * 18 17 5 30 30 H 1.08996 * 109.46979 * 150.17779 * 18 17 5 31 31 H 1.09001 * 115.55036 * 9.32885 * 21 19 2 32 32 H 1.09004 * 117.49402 * 0.02562 * 22 21 19 33 33 H 1.08993 * 117.49921 * 145.02074 * 22 21 19 34 34 H 1.09003 * 117.49643 * 214.97772 * 23 21 19 35 35 H 1.09000 * 117.50085 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8534 -1.4778 5 6 1.5439 0.2421 -2.7257 6 7 0.8581 1.3572 -2.5285 7 7 0.5865 1.9161 -3.6535 8 6 1.0860 1.1880 -4.6494 9 6 0.9956 1.4719 -6.0151 10 1 1.3550 0.7567 -6.7402 11 6 0.4388 2.6839 -6.4431 12 7 0.2800 2.9157 -7.7207 13 14 -0.0768 3.9692 -5.1895 14 1 -0.6324 5.1527 -5.8938 15 1 -1.1110 3.3971 -4.2906 16 1 1.1037 4.3801 -4.3876 17 7 1.7067 0.0933 -4.0745 18 6 2.3978 -0.9970 -4.7674 19 6 2.0323 -0.7103 1.2306 20 8 2.3195 -1.8820 1.1764 21 6 2.1763 0.0416 2.5286 22 6 3.4471 -0.1976 3.3464 23 6 2.1107 -0.7682 3.8251 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.6154 2.2819 -8.3740 28 1 3.4504 -0.7410 -4.8884 29 1 2.3114 -1.9121 -4.1817 30 1 1.9458 -1.1488 -5.7475 31 1 1.7514 1.0453 2.5401 32 1 4.1792 -0.8985 2.9452 33 1 3.8587 0.6489 3.8960 34 1 1.6430 -0.2970 4.6896 35 1 1.9630 -1.8447 3.7391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347789186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:40 Heat of formation + Delta-G solvation = 45.205794 kcal Electronic energy + Delta-G solvation = -19343.314447 eV Core-core repulsion = 16276.412851 eV Total energy + Delta-G solvation = -3066.901595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.97793 -40.05755 -36.33224 -34.03902 -33.66259 -33.11780 -30.00409 -26.78092 -26.07858 -25.29838 -23.16409 -22.69400 -21.48988 -20.37000 -19.33365 -18.23340 -17.26809 -16.66417 -15.69216 -15.13803 -15.03481 -14.85189 -14.57201 -14.15505 -13.72047 -13.28985 -12.97058 -12.89908 -12.67775 -12.40008 -12.14916 -11.98220 -11.83688 -11.66646 -11.13347 -10.93803 -10.85320 -10.77986 -10.21416 -9.91084 -9.74062 -9.54734 -9.43128 -9.13674 -8.70831 -8.43231 -7.45918 -7.13353 -4.87574 1.48426 1.83868 2.50706 2.86724 3.53987 3.56031 3.57207 3.67892 3.84094 4.01641 4.10559 4.37743 4.46639 4.61277 4.77131 4.99285 5.04205 5.07403 5.29853 5.30585 5.36935 5.53151 5.68954 5.71044 5.74217 5.79526 5.89565 5.96224 6.30587 6.42325 6.65915 7.08692 7.29495 7.36690 7.49466 8.01535 8.31334 8.52182 9.92788 10.06513 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031397 B = 0.004457 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.595444 B = 6280.753194 C = 6893.756511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 H 0.123 0.877 4 S -0.002 6.002 5 C 0.061 3.939 6 N -0.269 5.269 7 N -0.416 5.416 8 C 0.346 3.654 9 C -0.492 4.492 10 H 0.083 0.917 11 C 0.064 3.936 12 N -0.807 5.807 13 Si 1.113 2.887 14 H -0.311 1.311 15 H -0.260 1.260 16 H -0.281 1.281 17 N -0.511 5.511 18 C 0.101 3.899 19 C 0.408 3.592 20 O -0.442 6.442 21 C -0.214 4.214 22 C -0.148 4.148 23 C -0.151 4.151 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.283 0.717 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -6.046 15.868 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.249 4.249 3 H 0.141 0.859 4 S 0.226 5.774 5 C -0.313 4.313 6 N -0.113 5.113 7 N -0.266 5.266 8 C 0.103 3.897 9 C -0.533 4.533 10 H 0.101 0.899 11 C -0.158 4.158 12 N -0.431 5.431 13 Si 0.942 3.058 14 H -0.241 1.241 15 H -0.186 1.186 16 H -0.207 1.207 17 N -0.212 5.212 18 C -0.044 4.044 19 C 0.282 3.718 20 O -0.315 6.315 21 C -0.235 4.235 22 C -0.185 4.185 23 C -0.188 4.188 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.549 -5.175 16.526 17.678 hybrid contribution 0.828 -1.436 -1.224 2.060 sum 4.378 -6.610 15.302 17.234 Atomic orbital electron populations 1.21975 0.89793 1.03158 1.04913 1.23738 1.02307 1.04816 0.93991 0.85890 1.85015 1.70397 1.28703 0.93311 1.25546 1.14828 1.03924 0.87015 1.74172 1.12404 1.03735 1.20963 1.73981 1.31870 1.26852 0.93882 1.21708 0.89938 0.82457 0.95621 1.19409 1.40472 1.05621 0.87773 0.89884 1.27365 0.90309 0.98807 0.99366 1.70672 1.32140 1.38395 1.01866 0.82693 0.79487 0.72024 0.71629 1.24133 1.18571 1.20715 1.45823 1.48763 1.22533 1.04110 1.21556 0.96763 0.88224 0.97831 1.23259 0.72175 0.87678 0.88702 1.90399 1.37624 1.17344 1.86125 1.22738 1.06488 1.02550 0.91676 1.22970 0.90544 1.03591 1.01364 1.22978 1.00315 1.00409 0.95092 0.91652 0.88400 0.91941 0.90523 0.92097 0.91107 0.90197 0.85248 0.87962 0.87555 0.87699 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.99 37.15 0.33 -1.72 16 2 C -0.12 -1.78 2.62 -27.88 -0.07 -1.85 16 3 H 0.12 1.84 8.14 -51.91 -0.42 1.42 16 4 S 0.00 -0.04 20.55 -107.50 -2.21 -2.25 16 5 C 0.06 1.36 7.77 -87.28 -0.68 0.68 16 6 N -0.27 -6.65 9.74 30.89 0.30 -6.35 16 7 N -0.42 -11.32 7.51 31.26 0.23 -11.08 16 8 C 0.35 9.15 7.27 -154.81 -1.13 8.02 16 9 C -0.49 -13.14 9.50 -38.31 -0.36 -13.51 16 10 H 0.08 2.16 7.47 -52.49 -0.39 1.76 16 11 C 0.06 1.73 5.52 -17.29 -0.10 1.63 16 12 N -0.81 -21.57 13.65 55.56 0.76 -20.82 16 13 Si 1.11 27.73 25.90 -169.99 -4.40 23.32 16 14 H -0.31 -7.46 7.11 56.52 0.40 -7.06 16 15 H -0.26 -6.64 6.76 56.52 0.38 -6.26 16 16 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 17 N -0.51 -11.84 3.26 -123.18 -0.40 -12.24 16 18 C 0.10 1.81 10.89 59.85 0.65 2.46 16 19 C 0.41 5.40 6.04 -29.03 -0.18 5.22 16 20 O -0.44 -6.90 16.21 6.00 0.10 -6.80 16 21 C -0.21 -2.08 6.13 -91.77 -0.56 -2.65 16 22 C -0.15 -1.22 10.14 -26.73 -0.27 -1.49 16 23 C -0.15 -1.24 10.05 -26.73 -0.27 -1.50 16 24 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.10 1.77 5.89 -51.93 -0.31 1.47 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.28 7.20 8.72 -40.82 -0.36 6.85 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 30 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 31 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.95 7.89 -51.93 -0.41 0.54 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -31.53 313.14 -7.99 -39.51 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -4.46 Total: -3.32 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.63 Total: -4.71 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.89 Total: -50.48 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: 0.10 Total: -6.80 kcal Atomic # 14 Polarization: 27.73 SS G_CDS: -4.40 Total: 23.32 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.21 Total: -2.25 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.53 -7.99 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347789186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.718 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds