Wall clock time and date at job start Tue Mar 31 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47454 * 2 1 4 4 S 1.81000 * 109.47236 * 239.99474 * 2 1 3 5 5 C 1.76204 * 99.99786 * 64.99957 * 4 2 1 6 6 N 1.32389 * 126.25914 * 0.03042 * 5 4 2 7 7 N 1.28516 * 110.20242 * 179.97438 * 6 5 4 8 8 C 1.33098 * 109.74574 * 359.97438 * 7 6 5 9 9 C 1.39776 * 126.56257 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99778 * 186.09356 * 9 8 7 11 11 C 1.40085 * 120.00068 * 6.08606 * 9 8 7 12 12 N 1.30808 * 119.99942 * 184.12744 * 11 9 8 13 13 Si 1.86799 * 119.99669 * 4.13543 * 11 9 8 14 14 H 1.48509 * 109.46950 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47355 * 299.99259 * 13 11 9 16 16 H 1.48501 * 109.47215 * 59.99928 * 13 11 9 17 17 N 1.36671 * 126.25846 * 180.29350 * 5 4 2 18 18 C 1.46504 * 127.15199 * 0.04162 * 17 5 4 19 19 C 1.50707 * 109.47281 * 119.99519 * 2 1 3 20 20 O 1.20762 * 119.99880 * 94.99937 * 19 2 1 21 21 C 1.50703 * 119.99874 * 275.00033 * 19 2 1 22 22 C 1.53005 * 117.49724 * 223.61824 * 21 19 2 23 23 C 1.52997 * 117.49584 * 154.99915 * 21 19 2 24 24 H 1.09007 * 109.47089 * 300.00629 * 1 2 3 25 25 H 1.09002 * 109.47040 * 60.00201 * 1 2 3 26 26 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00392 * 354.84969 * 12 11 9 28 28 H 1.09000 * 109.46642 * 270.17152 * 18 17 5 29 29 H 1.08991 * 109.47275 * 30.17219 * 18 17 5 30 30 H 1.08996 * 109.46979 * 150.17779 * 18 17 5 31 31 H 1.09001 * 115.55036 * 9.32885 * 21 19 2 32 32 H 1.09004 * 117.49402 * 0.02562 * 22 21 19 33 33 H 1.08993 * 117.49921 * 145.02074 * 22 21 19 34 34 H 1.09003 * 117.49643 * 214.97772 * 23 21 19 35 35 H 1.09000 * 117.50085 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8534 -1.4778 5 6 1.5439 0.2421 -2.7257 6 7 0.8581 1.3572 -2.5285 7 7 0.5865 1.9161 -3.6535 8 6 1.0860 1.1880 -4.6494 9 6 0.9956 1.4719 -6.0151 10 1 1.3550 0.7567 -6.7402 11 6 0.4388 2.6839 -6.4431 12 7 0.2800 2.9157 -7.7207 13 14 -0.0768 3.9692 -5.1895 14 1 -0.6324 5.1527 -5.8938 15 1 -1.1110 3.3971 -4.2906 16 1 1.1037 4.3801 -4.3876 17 7 1.7067 0.0933 -4.0745 18 6 2.3978 -0.9970 -4.7674 19 6 2.0323 -0.7103 1.2306 20 8 2.3195 -1.8820 1.1764 21 6 2.1763 0.0416 2.5286 22 6 3.4471 -0.1976 3.3464 23 6 2.1107 -0.7682 3.8251 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.6154 2.2819 -8.3740 28 1 3.4504 -0.7410 -4.8884 29 1 2.3114 -1.9121 -4.1817 30 1 1.9458 -1.1488 -5.7475 31 1 1.7514 1.0453 2.5401 32 1 4.1792 -0.8985 2.9452 33 1 3.8587 0.6489 3.8960 34 1 1.6430 -0.2970 4.6896 35 1 1.9630 -1.8447 3.7391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347789186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:40 Heat of formation + Delta-G solvation = 27.583960 kcal Electronic energy + Delta-G solvation = -19344.078587 eV Core-core repulsion = 16276.412851 eV Total energy + Delta-G solvation = -3067.665735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.86881 -41.07987 -37.11315 -35.96890 -35.45677 -34.39456 -31.93995 -28.45573 -27.37589 -26.92669 -24.17798 -23.35668 -23.31360 -22.21408 -20.36593 -20.20054 -18.67681 -17.73731 -17.20967 -16.86060 -16.48773 -15.92690 -15.75788 -15.67910 -15.42840 -14.90080 -14.65894 -14.25554 -13.90977 -13.75499 -13.53341 -13.41975 -13.09012 -12.93952 -12.72766 -12.43358 -11.94184 -11.63621 -11.56789 -11.50501 -11.45857 -11.38259 -10.95064 -10.78955 -10.55686 -10.37046 -9.50035 -8.77582 -6.87381 0.12742 0.64788 0.96871 1.04808 1.54787 1.59686 1.94311 2.11664 2.19159 2.41527 2.67794 2.87429 3.03499 3.71767 3.78711 3.90131 3.98531 4.01538 4.07904 4.24172 4.29808 4.44613 4.52445 4.63057 4.66646 4.73583 4.75071 4.94371 5.03036 5.18649 5.20558 5.24056 5.35970 5.67473 5.99416 6.25990 6.37870 6.55094 7.91541 8.13260 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031397 B = 0.004457 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.595444 B = 6280.753194 C = 6893.756511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 H 0.126 0.874 4 S 0.015 5.985 5 C 0.077 3.923 6 N -0.295 5.295 7 N -0.444 5.444 8 C 0.327 3.673 9 C -0.510 4.510 10 H 0.082 0.918 11 C 0.042 3.958 12 N -0.823 5.823 13 Si 1.146 2.854 14 H -0.298 1.298 15 H -0.275 1.275 16 H -0.293 1.293 17 N -0.515 5.515 18 C 0.092 3.908 19 C 0.416 3.584 20 O -0.471 6.471 21 C -0.225 4.225 22 C -0.142 4.142 23 C -0.141 4.141 24 H 0.098 0.902 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.286 0.714 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -6.555 18.357 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.250 4.250 3 H 0.144 0.856 4 S 0.243 5.757 5 C -0.298 4.298 6 N -0.138 5.138 7 N -0.293 5.293 8 C 0.080 3.920 9 C -0.551 4.551 10 H 0.100 0.900 11 C -0.178 4.178 12 N -0.448 5.448 13 Si 0.975 3.025 14 H -0.227 1.227 15 H -0.201 1.201 16 H -0.220 1.220 17 N -0.215 5.215 18 C -0.050 4.050 19 C 0.291 3.709 20 O -0.346 6.346 21 C -0.245 4.245 22 C -0.179 4.179 23 C -0.178 4.178 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.168 0.832 32 H 0.109 0.891 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.222 -5.687 19.000 20.277 hybrid contribution 0.706 -1.456 -1.785 2.409 sum 4.928 -7.143 17.215 19.278 Atomic orbital electron populations 1.21881 0.89449 1.03185 1.04846 1.24006 1.02742 1.04996 0.93304 0.85552 1.85034 1.69839 1.27568 0.93295 1.26424 1.11971 1.03439 0.87961 1.74136 1.14298 1.05117 1.20207 1.73878 1.32604 1.28059 0.94771 1.21771 0.90863 0.83782 0.95591 1.19418 1.41635 1.05908 0.88110 0.89983 1.27820 0.90472 0.99646 0.99877 1.70668 1.33310 1.38868 1.01967 0.82211 0.78327 0.71588 0.70418 1.22713 1.20108 1.22002 1.46181 1.48043 1.22680 1.04594 1.21893 0.97285 0.87680 0.98139 1.23472 0.70991 0.87257 0.89139 1.90401 1.39132 1.18495 1.86526 1.22759 1.08379 1.03279 0.90090 1.23113 0.90060 1.04157 1.00556 1.23100 1.00176 0.99768 0.94757 0.88342 0.91756 0.91844 0.90301 0.90292 0.88682 0.89727 0.83199 0.89147 0.85006 0.84996 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 8.99 71.98 0.65 -3.10 16 2 C -0.12 -3.40 2.62 29.85 0.08 -3.32 16 3 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 4 S 0.02 0.52 20.55 -56.49 -1.16 -0.64 16 5 C 0.08 3.39 7.77 179.18 1.39 4.79 16 6 N -0.30 -14.57 9.74 -56.17 -0.55 -15.12 16 7 N -0.44 -24.42 7.51 -55.02 -0.41 -24.83 16 8 C 0.33 17.40 7.27 133.23 0.97 18.37 16 9 C -0.51 -27.59 9.50 23.09 0.22 -27.37 16 10 H 0.08 4.32 7.47 -2.91 -0.02 4.30 16 11 C 0.04 2.27 5.52 85.29 0.47 2.74 16 12 N -0.82 -44.34 13.65 21.86 0.30 -44.04 16 13 Si 1.15 57.36 25.90 68.60 1.78 59.13 16 14 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 15 H -0.27 -14.24 6.76 99.48 0.67 -13.57 16 16 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 17 N -0.52 -23.52 3.26 -543.63 -1.77 -25.29 16 18 C 0.09 3.18 10.89 127.77 1.39 4.57 16 19 C 0.42 10.06 6.04 29.10 0.18 10.24 16 20 O -0.47 -13.87 16.21 -1.45 -0.02 -13.90 16 21 C -0.22 -3.64 6.13 -11.54 -0.07 -3.71 16 22 C -0.14 -1.88 10.14 30.60 0.31 -1.57 16 23 C -0.14 -1.82 10.05 30.59 0.31 -1.52 16 24 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 25 H 0.06 2.28 5.89 -2.39 -0.01 2.27 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.29 14.68 8.72 -92.71 -0.81 13.87 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.09 2.79 7.85 -2.39 -0.02 2.77 16 30 H 0.08 2.83 7.48 -2.39 -0.02 2.82 16 31 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.45 7.89 -2.39 -0.02 1.43 16 Total: -1.00 -68.39 313.14 5.08 -63.31 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: 1.03 Total: 1.26 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.89 Total: 0.11 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -2.43 Total: -109.28 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.02 Total: -13.90 kcal Atomic # 14 Polarization: 57.36 SS G_CDS: 1.78 Total: 59.13 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -1.16 Total: -0.64 kcal Total: -68.39 5.08 -63.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347789186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.892 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds