Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76195 * 103.00228 * 2 1 4 4 C 1.39095 * 119.67535 * 180.02562 * 3 2 1 5 5 C 1.38444 * 119.24400 * 179.97438 * 4 3 2 6 6 C 1.38634 * 118.58407 * 359.73260 * 5 4 3 7 7 C 1.38865 * 119.27540 * 0.52707 * 6 5 4 8 8 N 1.39389 * 119.64298 * 179.73228 * 7 6 5 9 9 C 1.34784 * 119.99587 * 185.06228 * 8 7 6 10 10 O 1.21569 * 120.00307 * 354.86874 * 9 8 7 11 11 N 1.34776 * 119.99612 * 174.86006 * 9 8 7 12 12 C 1.46501 * 120.00233 * 0.02562 * 11 9 8 13 13 C 1.46495 * 119.99969 * 179.72945 * 11 9 8 14 14 C 1.50696 * 109.47441 * 89.99819 * 13 11 9 15 15 H 1.07998 * 119.99843 * 0.02562 * 14 13 11 16 16 C 1.37882 * 120.00358 * 179.97438 * 14 13 11 17 17 N 1.31514 * 119.99459 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47275 * 90.00196 * 18 16 14 20 20 H 1.48499 * 109.47117 * 210.00286 * 18 16 14 21 21 H 1.48500 * 109.47207 * 329.99836 * 18 16 14 22 22 N 1.32445 * 120.70765 * 359.46120 * 7 6 5 23 23 H 1.08995 * 109.47245 * 59.99829 * 1 2 3 24 24 H 1.09003 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46671 * 299.99549 * 1 2 3 26 26 H 1.08002 * 120.37641 * 359.95584 * 4 3 2 27 27 H 1.08000 * 120.70745 * 179.97438 * 5 4 3 28 28 H 1.07994 * 120.35732 * 180.26931 * 6 5 4 29 29 H 0.96996 * 120.00235 * 5.07213 * 8 7 6 30 30 H 1.09004 * 109.46860 * 89.99924 * 12 11 9 31 31 H 1.09003 * 109.47026 * 209.99922 * 12 11 9 32 32 H 1.08999 * 109.46857 * 329.99810 * 12 11 9 33 33 H 1.09007 * 109.47229 * 210.00261 * 13 11 9 34 34 H 1.09009 * 109.47018 * 329.99890 * 13 11 9 35 35 H 0.97001 * 119.99275 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5429 2.1159 -0.0005 5 6 3.8442 3.4671 -0.0011 6 6 2.8004 4.3795 -0.0067 7 6 1.4920 3.9144 -0.0005 8 7 0.4366 4.8250 -0.0005 9 6 -0.8328 4.3852 0.1085 10 8 -1.0645 3.1918 0.1128 11 7 -1.8453 5.2686 0.2129 12 6 -1.5662 6.7068 0.2073 13 6 -3.2256 4.7909 0.3254 14 6 -3.5749 4.6019 1.7790 15 1 -2.8422 4.8167 2.5428 16 6 -4.8303 4.1559 2.1341 17 7 -5.7228 3.8949 1.2040 18 14 -5.2635 3.9224 3.9361 19 1 -5.8308 5.1839 4.4763 20 1 -6.2644 2.8333 4.0675 21 1 -4.0396 3.5642 4.6970 22 7 1.2361 2.6149 0.0000 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5137 0.8900 26 1 4.3334 1.3800 -0.0002 27 1 4.8706 3.8033 -0.0011 28 1 3.0027 5.4403 -0.0117 29 1 0.6157 5.7750 -0.0790 30 1 -1.5901 7.0776 -0.8175 31 1 -2.3203 7.2256 0.7991 32 1 -0.5804 6.8872 0.6361 33 1 -3.9007 5.5226 -0.1185 34 1 -3.3249 3.8402 -0.1987 35 1 -6.6058 3.5807 1.4538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353136922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = 29.130616 kcal Electronic energy + Delta-G solvation = -19678.701794 eV Core-core repulsion = 16611.103127 eV Total energy + Delta-G solvation = -3067.598667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50190 -38.86427 -35.05454 -34.42861 -32.58837 -32.35990 -29.91197 -28.44635 -27.70974 -25.87080 -24.03945 -23.54929 -22.19123 -19.54661 -18.62003 -17.13731 -16.54953 -16.29236 -16.00706 -15.45437 -15.10620 -14.84572 -14.16621 -14.01503 -13.76158 -13.37510 -13.04885 -12.98317 -12.59590 -12.39085 -12.21321 -11.94106 -11.84598 -11.21431 -10.95715 -10.68097 -10.59331 -10.44872 -10.15737 -9.99067 -9.74519 -9.61573 -8.76865 -8.46302 -8.44113 -7.65772 -7.35541 -6.04979 -4.09423 1.10584 1.42797 1.69565 2.45182 3.00379 3.29356 3.36333 3.41518 3.64871 4.14163 4.34003 4.47089 4.70522 5.05029 5.16197 5.20921 5.29479 5.34026 5.47318 5.53872 5.72711 5.80936 5.86167 6.09246 6.18754 6.31547 6.39138 6.62429 6.96162 7.25412 7.47262 7.55009 7.91318 8.05634 8.22435 8.59467 8.91831 9.28310 9.56212 11.02873 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.005134 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.264436 B = 5452.202632 C = 6408.582584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.098 6.098 3 C 0.159 3.841 4 C -0.198 4.198 5 C -0.031 4.031 6 C -0.230 4.230 7 C 0.407 3.593 8 N -0.675 5.675 9 C 0.687 3.313 10 O -0.523 6.523 11 N -0.614 5.614 12 C 0.083 3.917 13 C 0.262 3.738 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.474 5.474 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.408 0.592 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.606 1.532 -3.839 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S 0.142 5.858 3 C -0.092 4.092 4 C -0.227 4.227 5 C -0.058 4.058 6 C -0.257 4.257 7 C 0.171 3.829 8 N -0.325 5.325 9 C 0.387 3.613 10 O -0.394 6.394 11 N -0.351 5.351 12 C -0.062 4.062 13 C 0.142 3.858 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.200 1.200 22 N -0.193 5.193 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.152 0.848 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.246 0.754 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.783 -0.705 -3.842 17.231 hybrid contribution -0.279 1.980 1.029 2.249 sum 16.503 1.275 -2.813 16.790 Atomic orbital electron populations 1.23424 0.91493 1.05187 1.08417 1.85114 1.10074 0.99438 1.91203 1.22887 0.91328 0.98102 0.96893 1.21442 0.95539 0.96765 1.08928 1.21141 0.98968 0.92021 0.93712 1.21318 0.91271 1.01038 1.12082 1.18184 0.85890 0.87429 0.91438 1.43197 1.04824 1.09070 1.75447 1.16025 0.79615 0.86158 0.79458 1.90964 1.81397 1.13379 1.53630 1.47552 1.08270 1.04301 1.75021 1.21600 1.00892 0.83061 1.00635 1.19226 0.73215 0.96062 0.97255 1.21442 0.97870 1.44861 0.92260 0.92582 1.24916 0.96201 0.95192 0.97714 1.69931 1.05434 1.45522 1.32511 0.86507 0.78204 0.77782 0.84995 1.20654 1.21055 1.19973 1.68109 1.33448 1.00298 1.17437 0.88987 0.88667 0.88581 0.84753 0.84385 0.84839 0.75424 0.93710 0.90254 0.93254 0.94838 0.93713 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 10.01 101.05 1.01 -0.87 16 2 S -0.10 -1.44 22.55 -107.50 -2.42 -3.86 16 3 C 0.16 2.55 7.00 -16.94 -0.12 2.43 16 4 C -0.20 -2.50 9.83 -39.19 -0.39 -2.89 16 5 C -0.03 -0.33 10.16 -39.36 -0.40 -0.73 16 6 C -0.23 -2.78 9.93 -39.20 -0.39 -3.17 16 7 C 0.41 6.73 7.42 -154.70 -1.15 5.58 16 8 N -0.68 -11.16 5.22 -15.84 -0.08 -11.25 16 9 C 0.69 14.84 8.24 -86.91 -0.72 14.12 16 10 O -0.52 -13.42 14.18 5.31 0.08 -13.34 16 11 N -0.61 -13.04 2.86 -188.74 -0.54 -13.58 16 12 C 0.08 1.26 10.16 59.85 0.61 1.86 16 13 C 0.26 6.82 5.16 -5.20 -0.03 6.79 16 14 C -0.53 -14.91 9.39 -34.44 -0.32 -15.24 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 18 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 N -0.47 -8.94 6.94 -11.22 -0.08 -9.02 16 23 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 24 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 25 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 26 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.41 5.03 6.50 -40.82 -0.27 4.77 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.05 0.59 6.44 -51.93 -0.33 0.26 16 33 H 0.03 0.88 8.07 -51.92 -0.42 0.46 16 34 H 0.04 1.32 7.42 -51.92 -0.39 0.93 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -34.51 318.02 -8.85 -43.36 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.33 Total: 2.14 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -1.98 Total: 9.57 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.04 Total: -59.63 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.42 Total: -3.86 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.51 -8.85 -43.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353136922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.490 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds