Wall clock time and date at job start Tue Mar 31 2020 05:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99857 * 2 1 4 4 N 1.46494 * 109.47415 * 125.00069 * 3 2 1 5 5 C 1.46503 * 119.99966 * 270.00214 * 4 3 2 6 6 C 1.50696 * 109.46820 * 269.99810 * 5 4 3 7 7 H 1.08002 * 120.00436 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00041 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99572 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00187 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47043 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47333 * 119.99879 * 10 8 6 13 13 H 1.48503 * 109.47182 * 240.00574 * 10 8 6 14 14 C 1.34775 * 120.00242 * 89.99848 * 4 3 2 15 15 O 1.21583 * 120.00286 * 180.02562 * 14 4 3 16 16 C 1.47544 * 119.99951 * 0.02562 * 14 4 3 17 17 C 1.39905 * 120.18711 * 270.00050 * 16 14 4 18 18 F 1.35097 * 120.09760 * 359.70289 * 17 16 14 19 19 C 1.38223 * 119.80441 * 179.97438 * 17 16 14 20 20 C 1.38302 * 120.19111 * 0.02562 * 19 17 16 21 21 C 1.38300 * 120.38208 * 359.95534 * 20 19 17 22 22 C 1.38226 * 120.19459 * 0.04583 * 21 20 19 23 23 F 1.35094 * 120.09926 * 179.97438 * 22 21 20 24 24 H 1.08006 * 119.99557 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00390 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00390 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47010 * 4.99313 * 3 2 1 28 28 H 1.09000 * 109.46973 * 244.99908 * 3 2 1 29 29 H 1.08995 * 109.47053 * 29.99325 * 5 4 3 30 30 H 1.08994 * 109.47251 * 149.99738 * 5 4 3 31 31 H 0.97006 * 120.00024 * 180.02562 * 9 8 6 32 32 H 1.07999 * 119.90364 * 179.97438 * 19 17 16 33 33 H 1.07996 * 119.80831 * 180.02562 * 20 19 17 34 34 H 1.08006 * 119.90325 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1313 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3437 2.4803 7 1 3.3039 3.8371 1.6367 8 6 2.5183 4.0669 3.6081 9 7 1.9589 3.4661 4.6355 10 14 2.8713 5.9000 3.6766 11 1 3.4991 6.3311 2.4018 12 1 1.6006 6.6416 3.8776 13 1 3.7944 6.1845 4.8046 14 6 4.2497 0.8663 0.9824 15 8 5.0216 0.8882 1.9214 16 6 4.6879 0.3300 -0.3204 17 6 4.5269 -1.0289 -0.6118 18 9 3.9746 -1.8569 0.3017 19 6 4.9398 -1.5228 -1.8350 20 6 5.5110 -0.6781 -2.7692 21 6 5.6735 0.6665 -2.4895 22 6 5.2663 1.1774 -1.2714 23 9 5.4265 2.4911 -1.0000 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0894 28 1 2.6213 1.4026 -0.9314 29 1 1.4887 1.6968 2.5458 30 1 3.0989 1.3605 3.2259 31 1 1.7293 3.9749 5.4289 32 1 4.8166 -2.5716 -2.0614 33 1 5.8310 -1.0706 -3.7231 34 1 6.1202 1.3193 -3.2250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359432529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:05 Heat of formation + Delta-G solvation = -72.183428 kcal Electronic energy + Delta-G solvation = -22205.056845 eV Core-core repulsion = 18546.931734 eV Total energy + Delta-G solvation = -3658.125112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.05197 -48.94537 -39.59488 -38.09562 -35.71609 -33.22190 -32.17079 -31.26519 -30.49448 -27.62765 -25.62572 -24.26569 -22.91478 -22.41144 -20.05527 -19.16935 -18.10633 -17.30891 -16.93503 -16.54566 -16.21045 -15.67484 -15.38579 -15.31558 -15.21785 -14.61238 -14.42074 -14.29136 -13.95423 -13.01506 -12.85517 -12.80559 -12.26188 -12.12143 -11.95645 -11.84686 -11.65383 -11.30913 -11.05378 -10.86760 -10.63060 -10.20387 -9.65256 -9.34720 -9.21235 -8.97340 -8.90146 -8.43128 -7.78132 -6.04129 -4.08811 0.71938 0.82526 2.44371 3.09041 3.15315 3.31064 3.38680 3.43799 3.67992 3.85231 4.26278 4.43859 4.49060 4.74032 4.77406 4.93267 5.21610 5.30390 5.39780 5.52277 5.60312 5.69196 5.73680 5.84294 5.93472 6.00245 6.17643 6.55380 6.80081 6.89014 7.02920 7.39892 7.47688 7.91887 8.21271 8.25794 8.78785 8.98331 9.56010 11.04236 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.006172 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.698675 B = 4535.297131 C = 5176.160162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 C 0.136 3.864 4 N -0.577 5.577 5 C 0.246 3.754 6 C -0.527 4.527 7 H 0.060 0.940 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.553 3.447 15 O -0.519 6.519 16 C -0.180 4.180 17 C 0.157 3.843 18 F -0.121 7.121 19 C -0.168 4.168 20 C -0.056 4.056 21 C -0.167 4.167 22 C 0.159 3.841 23 F -0.117 7.117 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 -9.409 -17.540 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.190 4.190 3 C 0.012 3.988 4 N -0.307 5.307 5 C 0.128 3.872 6 C -0.566 4.566 7 H 0.078 0.922 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.337 3.663 15 O -0.396 6.396 16 C -0.185 4.185 17 C 0.137 3.863 18 F -0.100 7.100 19 C -0.187 4.187 20 C -0.074 4.074 21 C -0.186 4.186 22 C 0.138 3.862 23 F -0.095 7.095 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.510 -9.305 -16.754 19.328 hybrid contribution 0.040 1.052 0.355 1.111 sum 2.550 -8.253 -16.399 18.535 Atomic orbital electron populations 1.23809 0.95677 1.01814 1.00348 1.23454 0.96530 0.98941 1.00067 1.20595 0.93016 0.95722 0.89426 1.48210 1.09678 1.58814 1.13993 1.19383 0.95674 0.93982 0.78166 1.21463 1.40593 0.93076 1.01467 0.92208 1.24929 0.94988 0.98857 0.95251 1.69947 1.42022 1.36117 1.05184 0.86432 0.77922 0.84830 0.78219 1.19704 1.20929 1.20821 1.17666 0.83203 0.79229 0.86252 1.90806 1.52662 1.55815 1.40281 1.20357 1.06628 0.93648 0.97901 1.17335 0.95625 0.86014 0.87343 1.91559 1.82331 1.70512 1.65564 1.21115 1.03182 1.01843 0.92528 1.20889 0.95556 0.91891 0.99045 1.21150 1.04391 0.97007 0.96093 1.17395 0.97512 0.78279 0.92995 1.91612 1.92704 1.31202 1.93992 0.88646 0.88204 0.87719 0.88954 0.91261 0.94471 0.93667 0.92734 0.83664 0.83713 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 14.32 29.01 0.42 -2.02 16 2 C -0.17 -2.65 9.85 -36.02 -0.35 -3.01 16 3 C 0.14 2.42 5.67 -5.20 -0.03 2.39 16 4 N -0.58 -13.06 2.44 -177.67 -0.43 -13.49 16 5 C 0.25 6.67 5.16 -5.19 -0.03 6.64 16 6 C -0.53 -15.30 9.39 -34.44 -0.32 -15.63 16 7 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 10 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.55 12.63 6.40 -12.47 -0.08 12.55 16 15 O -0.52 -14.19 16.68 5.29 0.09 -14.10 16 16 C -0.18 -3.15 3.93 -104.86 -0.41 -3.56 16 17 C 0.16 2.29 6.89 -38.96 -0.27 2.02 16 18 F -0.12 -1.95 15.58 2.25 0.04 -1.91 16 19 C -0.17 -1.69 10.01 -39.56 -0.40 -2.08 16 20 C -0.06 -0.46 10.03 -39.53 -0.40 -0.86 16 21 C -0.17 -1.75 10.01 -39.56 -0.40 -2.14 16 22 C 0.16 2.42 6.85 -38.97 -0.27 2.15 16 23 F -0.12 -2.08 16.83 2.25 0.04 -2.04 16 24 H 0.10 1.12 8.06 -52.48 -0.42 0.69 16 25 H 0.10 1.32 7.84 -52.49 -0.41 0.90 16 26 H 0.10 1.61 6.32 -52.49 -0.33 1.28 16 27 H 0.09 1.65 7.72 -51.93 -0.40 1.25 16 28 H 0.07 1.10 6.54 -51.93 -0.34 0.76 16 29 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 30 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -34.44 311.91 -6.01 -40.46 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -3.52 Total: -2.80 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.63 Total: -1.85 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.30 Total: -39.67 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.07 Total: -3.95 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.44 -6.01 -40.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359432529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.728 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds