Wall clock time and date at job start Tue Mar 31 2020 05:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99857 * 2 1 4 4 N 1.46494 * 109.47415 * 125.00069 * 3 2 1 5 5 C 1.46503 * 119.99966 * 270.00214 * 4 3 2 6 6 C 1.50696 * 109.46820 * 269.99810 * 5 4 3 7 7 H 1.08002 * 120.00436 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00041 * 179.97438 * 6 5 4 9 9 N 1.31508 * 119.99572 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00187 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47043 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47333 * 119.99879 * 10 8 6 13 13 H 1.48503 * 109.47182 * 240.00574 * 10 8 6 14 14 C 1.34775 * 120.00242 * 89.99848 * 4 3 2 15 15 O 1.21583 * 120.00286 * 180.02562 * 14 4 3 16 16 C 1.47544 * 119.99951 * 0.02562 * 14 4 3 17 17 C 1.39905 * 120.18711 * 270.00050 * 16 14 4 18 18 F 1.35097 * 120.09760 * 359.70289 * 17 16 14 19 19 C 1.38223 * 119.80441 * 179.97438 * 17 16 14 20 20 C 1.38302 * 120.19111 * 0.02562 * 19 17 16 21 21 C 1.38300 * 120.38208 * 359.95534 * 20 19 17 22 22 C 1.38226 * 120.19459 * 0.04583 * 21 20 19 23 23 F 1.35094 * 120.09926 * 179.97438 * 22 21 20 24 24 H 1.08006 * 119.99557 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00390 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00390 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47010 * 4.99313 * 3 2 1 28 28 H 1.09000 * 109.46973 * 244.99908 * 3 2 1 29 29 H 1.08995 * 109.47053 * 29.99325 * 5 4 3 30 30 H 1.08994 * 109.47251 * 149.99738 * 5 4 3 31 31 H 0.97006 * 120.00024 * 180.02562 * 9 8 6 32 32 H 1.07999 * 119.90364 * 179.97438 * 19 17 16 33 33 H 1.07996 * 119.80831 * 180.02562 * 20 19 17 34 34 H 1.08006 * 119.90325 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1313 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3437 2.4803 7 1 3.3039 3.8371 1.6367 8 6 2.5183 4.0669 3.6081 9 7 1.9589 3.4661 4.6355 10 14 2.8713 5.9000 3.6766 11 1 3.4991 6.3311 2.4018 12 1 1.6006 6.6416 3.8776 13 1 3.7944 6.1845 4.8046 14 6 4.2497 0.8663 0.9824 15 8 5.0216 0.8882 1.9214 16 6 4.6879 0.3300 -0.3204 17 6 4.5269 -1.0289 -0.6118 18 9 3.9746 -1.8569 0.3017 19 6 4.9398 -1.5228 -1.8350 20 6 5.5110 -0.6781 -2.7692 21 6 5.6735 0.6665 -2.4895 22 6 5.2663 1.1774 -1.2714 23 9 5.4265 2.4911 -1.0000 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0894 28 1 2.6213 1.4026 -0.9314 29 1 1.4887 1.6968 2.5458 30 1 3.0989 1.3605 3.2259 31 1 1.7293 3.9749 5.4289 32 1 4.8166 -2.5716 -2.0614 33 1 5.8310 -1.0706 -3.7231 34 1 6.1202 1.3193 -3.2250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359432529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:05 Heat of formation + Delta-G solvation = -94.468698 kcal Electronic energy + Delta-G solvation = -22206.023207 eV Core-core repulsion = 18546.931734 eV Total energy + Delta-G solvation = -3659.091473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.18662 -50.15914 -41.12844 -39.28634 -37.41361 -35.20934 -33.82802 -32.50574 -31.42350 -29.60530 -27.12856 -25.91110 -24.05102 -23.89905 -21.42727 -20.58798 -19.25314 -18.78313 -18.39674 -18.31899 -17.79847 -16.93945 -16.77085 -16.53544 -16.44760 -16.09201 -16.02815 -15.59426 -15.35398 -14.65172 -14.39515 -14.24127 -13.80069 -13.48204 -13.20139 -13.05873 -12.99222 -12.88857 -12.86033 -12.65928 -12.33774 -12.28033 -11.74042 -11.06216 -10.71141 -10.46459 -10.10147 -9.86294 -9.68257 -8.29092 -6.44372 -0.28667 -0.10590 1.20815 1.31889 1.35060 1.41156 1.49123 2.13871 2.30467 2.37273 2.69900 3.00529 3.29404 3.29876 3.75933 3.78769 3.95903 4.09550 4.15111 4.26312 4.59547 4.68822 4.70461 4.87535 4.92614 4.97165 5.00979 5.09759 5.12227 5.38142 5.61852 5.65687 5.68310 5.82665 5.96256 6.44576 6.63234 7.05365 7.27514 8.79240 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.006172 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.698675 B = 4535.297131 C = 5176.160162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.192 4.192 3 C 0.136 3.864 4 N -0.583 5.583 5 C 0.263 3.737 6 C -0.547 4.547 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.970 3.030 11 H -0.269 1.269 12 H -0.263 1.263 13 H -0.279 1.279 14 C 0.546 3.454 15 O -0.587 6.587 16 C -0.213 4.213 17 C 0.136 3.864 18 F -0.139 7.139 19 C -0.144 4.144 20 C -0.025 4.025 21 C -0.146 4.146 22 C 0.127 3.873 23 F -0.144 7.144 24 H 0.122 0.878 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.029 0.971 30 H -0.003 1.003 31 H 0.269 0.731 32 H 0.185 0.815 33 H 0.205 0.795 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 -10.113 -21.414 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.211 4.211 3 C 0.014 3.986 4 N -0.311 5.311 5 C 0.143 3.857 6 C -0.585 4.585 7 H 0.069 0.931 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.794 3.206 11 H -0.194 1.194 12 H -0.188 1.188 13 H -0.205 1.205 14 C 0.333 3.667 15 O -0.468 6.468 16 C -0.218 4.218 17 C 0.116 3.884 18 F -0.118 7.118 19 C -0.163 4.163 20 C -0.043 4.043 21 C -0.164 4.164 22 C 0.107 3.893 23 F -0.122 7.122 24 H 0.140 0.860 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.015 0.985 31 H 0.078 0.922 32 H 0.202 0.798 33 H 0.222 0.778 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.569 -10.024 -20.680 23.124 hybrid contribution -0.011 1.168 1.473 1.880 sum 2.558 -8.856 -19.207 21.304 Atomic orbital electron populations 1.24085 0.94962 1.03318 0.96963 1.23261 0.97111 0.97641 1.03100 1.20778 0.92402 0.97037 0.88357 1.48223 1.10947 1.58272 1.13686 1.18817 0.94243 0.93064 0.79595 1.21654 1.41141 0.94026 1.01716 0.93135 1.25873 0.94367 1.04068 0.94580 1.70058 1.42439 1.38215 1.05774 0.85329 0.78489 0.78579 0.78193 1.19356 1.18804 1.20451 1.18544 0.82307 0.77935 0.87919 1.90732 1.54287 1.58490 1.43274 1.20018 1.10294 0.95566 0.95915 1.17730 0.97086 0.84715 0.88907 1.91509 1.82902 1.70693 1.66689 1.21635 1.00570 1.03972 0.90105 1.21619 0.92081 0.90264 1.00295 1.21628 1.02154 0.98573 0.94061 1.17870 0.99493 0.77199 0.94709 1.91538 1.93191 1.33071 1.94436 0.85956 0.87764 0.87600 0.89626 0.89370 0.95260 0.98500 0.92163 0.79782 0.77796 0.80098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 14.32 67.78 0.97 -3.07 16 2 C -0.19 -5.99 9.85 25.65 0.25 -5.73 16 3 C 0.14 5.02 5.67 85.64 0.49 5.51 16 4 N -0.58 -28.29 2.44 -834.30 -2.04 -30.32 16 5 C 0.26 15.39 5.16 85.63 0.44 15.83 16 6 C -0.55 -33.52 9.39 25.60 0.24 -33.28 16 7 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 8 C 0.01 0.63 5.46 84.66 0.46 1.09 16 9 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 10 Si 0.97 46.64 29.54 68.60 2.03 48.67 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 14 C 0.55 26.89 6.40 86.70 0.55 27.44 16 15 O -0.59 -35.15 16.68 -3.98 -0.07 -35.21 16 16 C -0.21 -7.66 3.93 -20.02 -0.08 -7.74 16 17 C 0.14 3.84 6.89 22.67 0.16 4.00 16 18 F -0.14 -4.56 15.58 44.97 0.70 -3.86 16 19 C -0.14 -2.25 10.01 22.28 0.22 -2.02 16 20 C -0.03 -0.26 10.03 22.30 0.22 -0.04 16 21 C -0.15 -2.44 10.01 22.28 0.22 -2.21 16 22 C 0.13 3.84 6.85 22.67 0.16 3.99 16 23 F -0.14 -5.31 16.83 44.97 0.76 -4.55 16 24 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 25 H 0.10 2.62 7.84 -2.91 -0.02 2.59 16 26 H 0.11 3.29 6.32 -2.91 -0.02 3.27 16 27 H 0.09 3.19 7.72 -2.39 -0.02 3.17 16 28 H 0.09 2.86 6.54 -2.39 -0.02 2.85 16 29 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 30 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 31 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 32 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.21 -0.08 8.06 -2.91 -0.02 -0.10 16 34 H 0.18 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -84.69 311.91 7.10 -77.59 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: 1.12 Total: 1.36 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 4.31 Total: 3.77 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -1.75 Total: -87.76 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.07 Total: -35.21 kcal Atomic # 9 Polarization: -9.87 SS G_CDS: 1.46 Total: -8.41 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -84.69 7.10 -77.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359432529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.876 kcal (2) G-P(sol) polarization free energy of solvation -84.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds