Wall clock time and date at job start Tue Mar 31 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99614 * 2 1 4 4 O 1.20820 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99659 * 180.02562 * 3 2 1 6 6 C 1.53004 * 110.35588 * 57.86193 * 5 3 2 7 7 F 1.39896 * 109.47086 * 182.14010 * 6 5 3 8 8 F 1.39899 * 109.46689 * 302.13939 * 6 5 3 9 9 F 1.39895 * 109.46915 * 62.13747 * 6 5 3 10 10 C 1.54594 * 110.31093 * 295.71767 * 5 3 2 11 11 C 1.54933 * 102.92252 * 263.04441 * 10 5 3 12 12 N 1.48534 * 103.22824 * 322.58255 * 11 10 5 13 13 C 1.46901 * 111.00172 * 159.71827 * 12 11 10 14 14 C 1.50701 * 109.46921 * 52.60615 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 C 1.47912 * 105.81750 * 39.20906 * 12 11 10 23 23 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47220 * 299.99207 * 1 2 3 25 25 H 1.09000 * 109.47506 * 59.99706 * 1 2 3 26 26 H 1.09002 * 110.71950 * 21.40073 * 10 5 3 27 27 H 1.09000 * 110.72900 * 144.50713 * 10 5 3 28 28 H 1.08997 * 110.67236 * 204.14971 * 11 10 5 29 29 H 1.09001 * 110.67169 * 81.02116 * 11 10 5 30 30 H 1.09002 * 109.47401 * 292.60643 * 13 12 11 31 31 H 1.09001 * 109.46874 * 172.60656 * 13 12 11 32 32 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 33 33 H 1.08997 * 109.91505 * 94.02357 * 22 12 11 34 34 H 1.08999 * 109.91449 * 215.12087 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.1372 0.5410 -1.2156 7 9 5.5348 0.5838 -1.1720 8 9 3.7106 -0.7913 -1.1984 9 9 3.6880 1.1594 -2.3874 10 6 4.1355 0.6745 1.3053 11 6 4.3625 1.9249 2.1915 12 7 4.8318 2.9479 1.2221 13 6 4.6466 4.3037 1.7565 14 6 5.2807 4.3970 3.1204 15 1 5.7725 3.5354 3.5473 16 6 5.2339 5.5825 3.8227 17 7 4.6355 6.6318 3.3026 18 14 6.0206 5.6983 5.5130 19 1 7.4358 6.1255 5.3722 20 1 5.2833 6.6913 6.3352 21 1 5.9679 4.3705 6.1756 22 6 4.0243 2.7452 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 3.4137 0.0006 1.7667 27 1 5.0761 0.1578 1.1144 28 1 5.1261 1.7296 2.9443 29 1 3.4299 2.2386 2.6605 30 1 3.5813 4.5208 1.8354 31 1 5.1158 5.0251 1.0875 32 1 4.6023 7.4657 3.7969 33 1 3.1565 3.4045 0.0142 34 1 4.6301 2.9485 -0.8835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367604437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:39 Heat of formation + Delta-G solvation = -224.560734 kcal Electronic energy + Delta-G solvation = -23696.601586 eV Core-core repulsion = 19601.099674 eV Total energy + Delta-G solvation = -4095.501912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.15403 -47.63563 -47.57050 -40.95048 -38.34429 -36.53983 -33.63588 -31.89055 -29.33226 -28.08647 -26.96502 -24.80284 -23.31747 -22.61619 -20.55573 -20.13342 -18.79226 -18.28583 -18.15950 -17.18130 -16.55723 -16.31276 -16.05141 -14.83985 -14.57041 -14.46510 -14.28211 -14.06812 -14.00792 -13.83739 -13.70318 -13.54293 -13.35894 -13.23327 -12.57217 -12.32496 -12.10626 -11.74381 -11.60248 -11.19353 -11.12239 -10.97250 -10.91782 -10.72831 -10.59356 -10.49316 -9.95321 -9.19238 -8.52154 -7.53242 -6.08625 -4.11368 1.78893 2.29645 2.70166 3.29255 3.35352 3.37765 3.62787 3.78010 3.98956 4.37482 4.52040 4.58441 4.71499 4.93781 4.96017 5.02956 5.27260 5.34147 5.38855 5.52951 5.76494 5.90055 6.00624 6.18121 6.34950 6.44862 7.01386 7.25400 7.47263 7.62681 7.85747 8.04109 8.36372 8.95006 9.53318 11.02636 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.005284 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.959514 B = 5297.416977 C = 5705.757894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.348 6.348 3 C 0.475 3.525 4 O -0.473 6.473 5 C -0.113 4.113 6 C 0.472 3.528 7 F -0.162 7.162 8 F -0.172 7.172 9 F -0.180 7.180 10 C -0.113 4.113 11 C 0.053 3.947 12 N -0.507 5.507 13 C 0.182 3.818 14 C -0.517 4.517 15 H 0.065 0.935 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.045 3.955 23 H 0.104 0.896 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.048 0.952 30 H -0.001 1.001 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.082 0.918 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 -15.087 -7.488 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.264 6.264 3 C 0.315 3.685 4 O -0.358 6.358 5 C -0.116 4.116 6 C 0.418 3.582 7 F -0.143 7.143 8 F -0.153 7.153 9 F -0.161 7.161 10 C -0.151 4.151 11 C -0.074 4.074 12 N -0.231 5.231 13 C 0.057 3.943 14 C -0.556 4.556 15 H 0.083 0.917 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.084 4.084 23 H 0.123 0.877 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.017 0.983 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.205 -14.638 -7.588 17.290 hybrid contribution -0.641 0.307 0.787 1.061 sum -5.847 -14.332 -6.801 16.907 Atomic orbital electron populations 1.23353 0.75699 1.03957 1.02907 1.86537 1.23812 1.32175 1.83862 1.22655 0.90364 0.82107 0.73385 1.90711 1.65829 1.36052 1.43165 1.22790 0.89744 1.02253 0.96862 1.19814 0.76917 0.77655 0.83861 1.93238 1.28521 1.96193 1.96381 1.93224 1.89663 1.35784 1.96614 1.93204 1.89048 1.82626 1.51213 1.22836 1.01977 0.99571 0.90701 1.23066 1.00315 0.88860 0.95204 1.65095 1.48778 1.07132 1.02136 1.19982 0.95796 0.82908 0.95597 1.21150 1.36087 0.97465 1.00859 0.91684 1.24995 0.95404 0.95627 0.98414 1.69961 1.43214 1.01881 1.38263 0.86474 0.79334 0.77853 0.83606 1.20517 1.21288 1.19831 1.23061 0.98753 0.88154 0.98402 0.87734 0.91494 0.91678 0.89390 0.88317 0.88637 0.93361 0.98319 0.94477 0.92780 0.90045 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.57 9.33 -39.27 -0.37 -4.94 16 3 C 0.47 7.47 6.31 36.00 0.23 7.70 16 4 O -0.47 -8.65 14.99 -18.75 -0.28 -8.93 16 5 C -0.11 -1.77 0.45 -154.30 -0.07 -1.84 16 6 C 0.47 6.80 2.06 37.16 0.08 6.88 16 7 F -0.16 -2.39 16.09 2.25 0.04 -2.35 16 8 F -0.17 -2.30 15.99 2.25 0.04 -2.27 16 9 F -0.18 -2.64 16.68 2.25 0.04 -2.60 16 10 C -0.11 -1.64 5.93 -24.87 -0.15 -1.78 16 11 C 0.05 0.99 5.55 -1.90 -0.01 0.98 16 12 N -0.51 -10.72 5.39 -231.88 -1.25 -11.97 16 13 C 0.18 4.71 4.79 -4.97 -0.02 4.68 16 14 C -0.52 -14.15 8.56 -34.44 -0.29 -14.44 16 15 H 0.07 1.72 6.52 -52.49 -0.34 1.38 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 18 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.04 0.83 5.60 -2.75 -0.02 0.81 16 23 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 25 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 26 H 0.09 1.10 7.74 -51.93 -0.40 0.69 16 27 H 0.10 1.31 7.24 -51.93 -0.38 0.94 16 28 H 0.10 1.75 7.14 -51.93 -0.37 1.38 16 29 H 0.05 0.95 8.02 -51.93 -0.42 0.54 16 30 H 0.00 -0.03 7.81 -51.93 -0.41 -0.43 16 31 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.08 1.65 5.85 -51.93 -0.30 1.35 16 34 H 0.09 1.55 7.36 -51.93 -0.38 1.17 16 LS Contribution 296.41 15.07 4.47 4.47 Total: -1.00 -30.52 296.41 -4.72 -35.23 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -3.82 Total: -3.12 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 0.71 Total: 5.90 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.51 Total: -37.62 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.65 Total: -13.86 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.11 Total: -7.22 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.52 -4.72 -35.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367604437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.326 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds