Wall clock time and date at job start Tue Mar 31 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99614 * 2 1 4 4 O 1.20820 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99659 * 180.02562 * 3 2 1 6 6 C 1.53004 * 110.35588 * 57.86193 * 5 3 2 7 7 F 1.39896 * 109.47086 * 182.14010 * 6 5 3 8 8 F 1.39899 * 109.46689 * 302.13939 * 6 5 3 9 9 F 1.39895 * 109.46915 * 62.13747 * 6 5 3 10 10 C 1.54594 * 110.31093 * 295.71767 * 5 3 2 11 11 C 1.54933 * 102.92252 * 263.04441 * 10 5 3 12 12 N 1.48534 * 103.22824 * 322.58255 * 11 10 5 13 13 C 1.46901 * 111.00172 * 159.71827 * 12 11 10 14 14 C 1.50701 * 109.46921 * 52.60615 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 C 1.47912 * 105.81750 * 39.20906 * 12 11 10 23 23 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47220 * 299.99207 * 1 2 3 25 25 H 1.09000 * 109.47506 * 59.99706 * 1 2 3 26 26 H 1.09002 * 110.71950 * 21.40073 * 10 5 3 27 27 H 1.09000 * 110.72900 * 144.50713 * 10 5 3 28 28 H 1.08997 * 110.67236 * 204.14971 * 11 10 5 29 29 H 1.09001 * 110.67169 * 81.02116 * 11 10 5 30 30 H 1.09002 * 109.47401 * 292.60643 * 13 12 11 31 31 H 1.09001 * 109.46874 * 172.60656 * 13 12 11 32 32 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 33 33 H 1.08997 * 109.91505 * 94.02357 * 22 12 11 34 34 H 1.08999 * 109.91449 * 215.12087 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.1372 0.5410 -1.2156 7 9 5.5348 0.5838 -1.1720 8 9 3.7106 -0.7913 -1.1984 9 9 3.6880 1.1594 -2.3874 10 6 4.1355 0.6745 1.3053 11 6 4.3625 1.9249 2.1915 12 7 4.8318 2.9479 1.2221 13 6 4.6466 4.3037 1.7565 14 6 5.2807 4.3970 3.1204 15 1 5.7725 3.5354 3.5473 16 6 5.2339 5.5825 3.8227 17 7 4.6355 6.6318 3.3026 18 14 6.0206 5.6983 5.5130 19 1 7.4358 6.1255 5.3722 20 1 5.2833 6.6913 6.3352 21 1 5.9679 4.3705 6.1756 22 6 4.0243 2.7452 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 3.4137 0.0006 1.7667 27 1 5.0761 0.1578 1.1144 28 1 5.1261 1.7296 2.9443 29 1 3.4299 2.2386 2.6605 30 1 3.5813 4.5208 1.8354 31 1 5.1158 5.0251 1.0875 32 1 4.6023 7.4657 3.7969 33 1 3.1565 3.4045 0.0142 34 1 4.6301 2.9485 -0.8835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367604437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:39 Heat of formation + Delta-G solvation = -244.949902 kcal Electronic energy + Delta-G solvation = -23697.485726 eV Core-core repulsion = 19601.099674 eV Total energy + Delta-G solvation = -4096.386053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.31411 -48.80002 -48.70988 -42.19523 -39.76709 -37.76062 -35.49109 -33.70573 -30.75314 -29.37216 -28.48359 -26.21105 -24.90932 -24.08053 -22.19437 -21.42856 -19.99294 -19.46764 -19.35221 -18.44848 -18.33962 -17.72008 -17.35770 -16.52819 -16.02075 -15.64528 -15.59934 -15.49637 -15.28755 -15.13058 -14.86972 -14.84495 -14.60178 -14.46748 -14.31749 -13.79941 -13.37935 -13.18838 -12.98395 -12.96503 -12.65644 -12.51197 -12.42035 -12.24791 -11.98834 -11.94235 -11.74661 -11.25142 -10.65404 -9.32338 -8.23124 -6.34219 0.55968 1.16961 1.42717 1.44614 1.49498 1.55145 2.38855 2.41120 2.51711 2.81943 3.10610 3.19742 3.30993 3.40153 3.57971 4.05025 4.19980 4.22840 4.27044 4.41846 4.51405 4.59901 4.65696 4.86132 4.88277 5.01796 5.10787 5.23169 5.56374 5.85261 6.07400 6.29573 6.35171 6.81090 7.36080 8.89333 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.005284 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.959514 B = 5297.416977 C = 5705.757894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.342 6.342 3 C 0.479 3.521 4 O -0.507 6.507 5 C -0.113 4.113 6 C 0.482 3.518 7 F -0.162 7.162 8 F -0.160 7.160 9 F -0.181 7.181 10 C -0.098 4.098 11 C 0.050 3.950 12 N -0.511 5.511 13 C 0.198 3.802 14 C -0.529 4.529 15 H 0.075 0.925 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.974 3.026 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.258 1.258 22 C 0.045 3.955 23 H 0.145 0.855 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.029 0.971 30 H -0.035 1.035 31 H 0.007 0.993 32 H 0.265 0.735 33 H 0.058 0.942 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 -17.570 -6.838 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.257 6.257 3 C 0.320 3.680 4 O -0.395 6.395 5 C -0.116 4.116 6 C 0.428 3.572 7 F -0.143 7.143 8 F -0.141 7.141 9 F -0.163 7.163 10 C -0.136 4.136 11 C -0.078 4.078 12 N -0.236 5.236 13 C 0.072 3.928 14 C -0.567 4.567 15 H 0.093 0.907 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.798 3.202 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.182 1.182 22 C -0.083 4.083 23 H 0.163 0.837 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.047 0.953 30 H -0.017 1.017 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.846 -17.172 -6.951 19.149 hybrid contribution -0.833 1.032 0.519 1.424 sum -5.679 -16.140 -6.432 18.279 Atomic orbital electron populations 1.23748 0.73510 1.06579 1.02907 1.86525 1.25843 1.30298 1.83045 1.22623 0.90279 0.82434 0.72633 1.90710 1.66483 1.37340 1.44936 1.22651 0.90289 1.00329 0.98380 1.19484 0.76761 0.77875 0.83121 1.93245 1.28493 1.96219 1.96338 1.93250 1.89546 1.34757 1.96522 1.93207 1.89078 1.82778 1.51206 1.22831 1.03788 0.97942 0.89006 1.23098 0.99373 0.89791 0.95520 1.64966 1.49726 1.05344 1.03517 1.19594 0.93135 0.85088 0.95001 1.21508 1.35910 0.97904 1.01423 0.90715 1.25986 0.95832 0.95162 1.02794 1.70109 1.44680 1.02577 1.40161 0.85317 0.78248 0.78409 0.78263 1.19820 1.21122 1.18223 1.22943 0.97707 0.90283 0.97414 0.83750 0.91718 0.91603 0.86524 0.86256 0.88294 0.95267 1.01738 0.97508 0.92658 0.92365 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.34 -8.15 9.33 -51.45 -0.48 -8.63 16 3 C 0.48 14.59 6.31 71.23 0.45 15.04 16 4 O -0.51 -18.79 14.99 21.98 0.33 -18.46 16 5 C -0.11 -3.39 0.45 -52.05 -0.02 -3.42 16 6 C 0.48 12.88 2.06 71.98 0.15 13.03 16 7 F -0.16 -4.40 16.09 44.97 0.72 -3.68 16 8 F -0.16 -3.78 15.99 44.97 0.72 -3.06 16 9 F -0.18 -5.07 16.68 44.97 0.75 -4.32 16 10 C -0.10 -2.61 5.93 31.80 0.19 -2.42 16 11 C 0.05 1.81 5.55 86.65 0.48 2.29 16 12 N -0.51 -22.00 5.39 -887.54 -4.78 -26.78 16 13 C 0.20 10.70 4.79 85.56 0.41 11.11 16 14 C -0.53 -29.41 8.56 25.60 0.22 -29.19 16 15 H 0.07 3.92 6.52 -2.91 -0.02 3.90 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.94 -56.68 13.29 21.45 0.28 -56.40 16 18 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 22 C 0.05 1.70 5.60 86.44 0.48 2.18 16 23 H 0.14 1.28 8.14 -2.38 -0.02 1.27 16 24 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 25 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 26 H 0.12 2.50 7.74 -2.39 -0.02 2.48 16 27 H 0.12 2.75 7.24 -2.39 -0.02 2.73 16 28 H 0.10 3.50 7.14 -2.39 -0.02 3.48 16 29 H 0.03 1.16 8.02 -2.39 -0.02 1.15 16 30 H -0.04 -2.09 7.81 -2.39 -0.02 -2.11 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.06 2.50 5.85 -2.39 -0.01 2.48 16 34 H 0.10 3.39 7.36 -2.39 -0.02 3.37 16 Total: -1.00 -67.27 296.41 4.72 -62.55 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.13 Total: 2.49 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 4.02 Total: 10.74 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -4.50 Total: -83.18 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.15 Total: -27.09 kcal Atomic # 9 Polarization: -13.25 SS G_CDS: 2.19 Total: -11.05 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.27 4.72 -62.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367604437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.397 kcal (2) G-P(sol) polarization free energy of solvation -67.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds