Wall clock time and date at job start Tue Mar 31 2020 05:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47142 * 124.53534 * 3 2 1 5 5 C 1.36766 * 119.99715 * 264.66243 * 4 3 2 6 6 H 1.08004 * 120.00151 * 141.91775 * 5 4 3 7 7 C 1.39116 * 120.00528 * 321.91190 * 5 4 3 8 8 N 1.31322 * 120.00111 * 157.43979 * 7 5 4 9 9 Si 1.86802 * 119.99508 * 337.44717 * 7 5 4 10 10 H 1.48498 * 109.47179 * 91.50443 * 9 7 5 11 11 H 1.48500 * 109.46971 * 211.50290 * 9 7 5 12 12 H 1.48500 * 109.47352 * 331.50341 * 9 7 5 13 13 C 1.34776 * 119.99915 * 84.66174 * 4 3 2 14 14 O 1.21643 * 119.99585 * 184.64349 * 13 4 3 15 15 C 1.47334 * 120.00212 * 4.36151 * 13 4 3 16 16 C 1.38793 * 120.34806 * 54.76810 * 15 13 4 17 17 C 1.38936 * 120.62477 * 180.02562 * 16 15 13 18 18 C 1.36253 * 121.15225 * 359.97438 * 17 16 15 19 19 C 1.40690 * 120.19098 * 359.97438 * 18 17 16 20 20 N 1.33758 * 120.97465 * 179.97438 * 19 18 17 21 21 C 1.31349 * 119.73212 * 180.02562 * 20 19 18 22 22 C 1.39616 * 120.67493 * 359.97438 * 21 20 19 23 23 N 1.31470 * 120.64551 * 359.97438 * 22 21 20 24 24 C 1.33457 * 119.72453 * 359.76222 * 23 22 21 25 25 H 4.40642 * 5.51412 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.47564 * 4.53221 * 3 2 1 27 27 H 1.09005 * 109.47316 * 244.53564 * 3 2 1 28 28 H 0.97004 * 119.99291 * 180.02562 * 8 7 5 29 29 H 1.07998 * 119.68799 * 359.97438 * 16 15 13 30 30 H 1.08002 * 119.42133 * 179.97438 * 17 16 15 31 31 H 1.07996 * 119.90730 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.66452 * 179.97438 * 21 20 19 33 33 H 1.08003 * 119.67978 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.7839 -1.1378 5 6 3.4660 0.1572 -2.3072 6 1 3.2355 0.6231 -3.2540 7 6 4.1008 -1.0803 -2.2774 8 7 4.0300 -1.8798 -3.3167 9 14 5.0538 -1.6047 -0.7587 10 1 4.1558 -2.3572 0.1538 11 1 6.1895 -2.4722 -1.1620 12 1 5.5735 -0.4015 -0.0604 13 6 3.2556 2.1220 -1.0322 14 8 3.5796 2.7816 -2.0016 15 6 2.9901 2.7865 0.2557 16 6 3.6604 2.3855 1.4030 17 6 3.4142 3.0077 2.6206 18 6 2.5129 4.0244 2.7230 19 6 1.8109 4.4648 1.5861 20 7 0.9223 5.4611 1.6689 21 6 0.2802 5.8525 0.5919 22 6 0.5158 5.2393 -0.6401 23 7 1.3854 4.2589 -0.7452 24 6 2.0533 3.8481 0.3347 25 1 -1.0501 0.0000 0.0003 26 1 3.0098 -1.0236 -0.0812 27 1 3.0091 0.4427 0.9279 28 1 4.4724 -2.7429 -3.2957 29 1 4.3796 1.5816 1.3489 30 1 3.9465 2.6797 3.5012 31 1 2.3375 4.4941 3.6796 32 1 -0.4373 6.6568 0.6601 33 1 -0.0209 5.5742 -1.5154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381654439.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:51 Heat of formation + Delta-G solvation = 121.250526 kcal Electronic energy + Delta-G solvation = -21291.162761 eV Core-core repulsion = 18092.114761 eV Total energy + Delta-G solvation = -3199.048000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34493 -39.04307 -37.00760 -35.40714 -34.53331 -32.70981 -31.69899 -30.79837 -30.55923 -26.81805 -25.70557 -25.06665 -24.07147 -22.62310 -19.57074 -18.81323 -18.55117 -17.82314 -16.79781 -16.65971 -15.96813 -15.63757 -15.10456 -14.92998 -14.51237 -14.09222 -13.96551 -13.70643 -13.12840 -12.91601 -12.57159 -12.41286 -11.91683 -11.82019 -11.65172 -11.51426 -11.45257 -10.98322 -10.85514 -10.29263 -9.82196 -9.58750 -9.27888 -9.08056 -8.92776 -8.62615 -8.35804 -7.91410 -6.48383 -4.04363 0.17498 0.60239 1.90223 2.75463 2.93301 3.12075 3.13469 3.14427 3.35941 3.66520 4.03073 4.04634 4.10516 4.21948 4.24984 4.53147 4.75642 4.80625 4.90532 5.00249 5.10581 5.21098 5.31273 5.39201 5.69120 5.81571 5.82852 5.94923 6.07732 6.21261 6.26754 6.38857 6.65926 7.32750 7.44176 7.84299 8.10272 8.20349 8.40036 8.85413 9.19791 9.63718 10.63278 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.006378 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.617664 B = 4389.376747 C = 4671.453714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.173 4.173 3 C 0.180 3.820 4 N -0.452 5.452 5 C -0.317 4.317 6 H 0.109 0.891 7 C 0.063 3.937 8 N -0.852 5.852 9 Si 0.863 3.137 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.259 1.259 13 C 0.516 3.484 14 O -0.530 6.530 15 C -0.057 4.057 16 C -0.092 4.092 17 C -0.094 4.094 18 C -0.084 4.084 19 C 0.076 3.924 20 N -0.430 5.430 21 C 0.073 3.927 22 C 0.069 3.931 23 N -0.395 5.395 24 C 0.107 3.893 25 H 0.212 0.788 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.276 0.724 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.173 0.827 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 8.494 13.671 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.175 4.175 3 C 0.058 3.942 4 N -0.173 5.173 5 C -0.444 4.444 6 H 0.126 0.874 7 C -0.144 4.144 8 N -0.488 5.488 9 Si 0.689 3.311 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.183 1.183 13 C 0.304 3.696 14 O -0.409 6.409 15 C -0.062 4.062 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.104 4.104 19 C -0.048 4.048 20 N -0.145 5.145 21 C -0.103 4.103 22 C -0.107 4.107 23 N -0.108 5.108 24 C -0.018 4.018 25 H 0.229 0.771 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.190 0.810 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.855 8.486 13.106 16.351 hybrid contribution 0.137 -0.450 0.632 0.788 sum -4.718 8.036 13.739 16.601 Atomic orbital electron populations 1.24684 0.95645 1.01835 1.01419 1.23681 0.94842 0.99493 0.99460 1.19240 0.84365 0.98953 0.91663 1.43467 1.56622 1.04397 1.12777 1.19024 1.37867 1.02414 0.85055 0.87370 1.25388 0.96233 0.95518 0.97224 1.69722 1.39588 1.08462 1.30986 0.87195 0.80869 0.79461 0.83542 1.19690 1.20631 1.18282 1.17742 0.82211 0.82772 0.86904 1.90698 1.49175 1.63389 1.37622 1.20380 0.95158 0.94906 0.95768 1.21548 0.99004 0.99425 0.91254 1.20895 0.97347 0.95359 0.97798 1.20801 0.95506 0.96903 0.97181 1.19490 0.96620 0.94738 0.93948 1.68658 1.04759 1.10219 1.30823 1.24008 0.97720 0.99144 0.89410 1.24144 0.95089 0.92601 0.98852 1.68799 1.02932 1.09661 1.29366 1.19353 0.96474 0.96243 0.89759 0.77096 0.88175 0.89225 0.91327 0.84013 0.84239 0.84299 0.81013 0.80993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.97 19.25 29.55 0.57 -3.41 16 2 C -0.17 -3.60 13.58 -37.13 -0.50 -4.10 16 3 C 0.18 3.82 4.27 -6.83 -0.03 3.79 16 4 N -0.45 -11.32 2.13 -119.20 -0.25 -11.57 16 5 C -0.32 -9.05 9.36 -15.03 -0.14 -9.19 16 6 H 0.11 3.50 7.88 -52.48 -0.41 3.09 16 7 C 0.06 1.73 5.26 -17.44 -0.09 1.64 16 8 N -0.85 -24.32 13.95 55.50 0.77 -23.55 16 9 Si 0.86 19.36 25.24 -169.99 -4.29 15.07 16 10 H -0.27 -5.58 6.51 56.52 0.37 -5.21 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 13 C 0.52 12.83 6.70 -12.56 -0.08 12.75 16 14 O -0.53 -15.16 16.64 5.24 0.09 -15.07 16 15 C -0.06 -1.15 4.98 -104.63 -0.52 -1.67 16 16 C -0.09 -1.45 7.59 -39.12 -0.30 -1.75 16 17 C -0.09 -1.15 9.93 -40.04 -0.40 -1.54 16 18 C -0.08 -1.09 9.97 -39.37 -0.39 -1.48 16 19 C 0.08 1.22 6.59 -84.82 -0.56 0.66 16 20 N -0.43 -6.20 10.46 -10.83 -0.11 -6.31 16 21 C 0.07 0.87 11.21 -17.24 -0.19 0.67 16 22 C 0.07 0.95 11.22 -17.19 -0.19 0.76 16 23 N -0.39 -7.67 9.69 -10.58 -0.10 -7.77 16 24 C 0.11 2.05 6.59 -84.51 -0.56 1.49 16 25 H 0.21 2.93 7.80 -54.08 -0.42 2.50 16 26 H 0.10 2.17 3.54 -51.93 -0.18 1.98 16 27 H 0.09 1.60 4.44 -51.93 -0.23 1.37 16 28 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.14 2.08 7.24 -52.49 -0.38 1.70 16 30 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.17 1.73 8.06 -52.48 -0.42 1.30 16 LS Contribution 296.78 15.07 4.47 4.47 Total: -1.00 -35.69 296.78 -5.31 -40.99 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -2.49 Total: 5.13 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -3.39 Total: -1.39 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.30 Total: -49.21 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.09 Total: -15.07 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.29 Total: 15.07 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.69 -5.31 -40.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381654439.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.245 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds