Wall clock time and date at job start Tue Mar 31 2020 05:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47142 * 124.53534 * 3 2 1 5 5 C 1.36766 * 119.99715 * 264.66243 * 4 3 2 6 6 H 1.08004 * 120.00151 * 141.91775 * 5 4 3 7 7 C 1.39116 * 120.00528 * 321.91190 * 5 4 3 8 8 N 1.31322 * 120.00111 * 157.43979 * 7 5 4 9 9 Si 1.86802 * 119.99508 * 337.44717 * 7 5 4 10 10 H 1.48498 * 109.47179 * 91.50443 * 9 7 5 11 11 H 1.48500 * 109.46971 * 211.50290 * 9 7 5 12 12 H 1.48500 * 109.47352 * 331.50341 * 9 7 5 13 13 C 1.34776 * 119.99915 * 84.66174 * 4 3 2 14 14 O 1.21643 * 119.99585 * 184.64349 * 13 4 3 15 15 C 1.47334 * 120.00212 * 4.36151 * 13 4 3 16 16 C 1.38793 * 120.34806 * 54.76810 * 15 13 4 17 17 C 1.38936 * 120.62477 * 180.02562 * 16 15 13 18 18 C 1.36253 * 121.15225 * 359.97438 * 17 16 15 19 19 C 1.40690 * 120.19098 * 359.97438 * 18 17 16 20 20 N 1.33758 * 120.97465 * 179.97438 * 19 18 17 21 21 C 1.31349 * 119.73212 * 180.02562 * 20 19 18 22 22 C 1.39616 * 120.67493 * 359.97438 * 21 20 19 23 23 N 1.31470 * 120.64551 * 359.97438 * 22 21 20 24 24 C 1.33457 * 119.72453 * 359.76222 * 23 22 21 25 25 H 4.40642 * 5.51412 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.47564 * 4.53221 * 3 2 1 27 27 H 1.09005 * 109.47316 * 244.53564 * 3 2 1 28 28 H 0.97004 * 119.99291 * 180.02562 * 8 7 5 29 29 H 1.07998 * 119.68799 * 359.97438 * 16 15 13 30 30 H 1.08002 * 119.42133 * 179.97438 * 17 16 15 31 31 H 1.07996 * 119.90730 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.66452 * 179.97438 * 21 20 19 33 33 H 1.08003 * 119.67978 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.7839 -1.1378 5 6 3.4660 0.1572 -2.3072 6 1 3.2355 0.6231 -3.2540 7 6 4.1008 -1.0803 -2.2774 8 7 4.0300 -1.8798 -3.3167 9 14 5.0538 -1.6047 -0.7587 10 1 4.1558 -2.3572 0.1538 11 1 6.1895 -2.4722 -1.1620 12 1 5.5735 -0.4015 -0.0604 13 6 3.2556 2.1220 -1.0322 14 8 3.5796 2.7816 -2.0016 15 6 2.9901 2.7865 0.2557 16 6 3.6604 2.3855 1.4030 17 6 3.4142 3.0077 2.6206 18 6 2.5129 4.0244 2.7230 19 6 1.8109 4.4648 1.5861 20 7 0.9223 5.4611 1.6689 21 6 0.2802 5.8525 0.5919 22 6 0.5158 5.2393 -0.6401 23 7 1.3854 4.2589 -0.7452 24 6 2.0533 3.8481 0.3347 25 1 -1.0501 0.0000 0.0003 26 1 3.0098 -1.0236 -0.0812 27 1 3.0091 0.4427 0.9279 28 1 4.4724 -2.7429 -3.2957 29 1 4.3796 1.5816 1.3489 30 1 3.9465 2.6797 3.5012 31 1 2.3375 4.4941 3.6796 32 1 -0.4373 6.6568 0.6601 33 1 -0.0209 5.5742 -1.5154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381654439.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:51 Heat of formation + Delta-G solvation = 94.102549 kcal Electronic energy + Delta-G solvation = -21292.339986 eV Core-core repulsion = 18092.114761 eV Total energy + Delta-G solvation = -3200.225224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50535 -40.73741 -38.21398 -37.26387 -35.73453 -34.60831 -33.43757 -31.89694 -31.83987 -28.52045 -27.40362 -26.34486 -25.18513 -24.09865 -21.09098 -20.30919 -19.91289 -19.15114 -18.52129 -17.87790 -17.73937 -17.24977 -16.28508 -16.14145 -15.83890 -15.67661 -15.25403 -15.01414 -14.88140 -14.51319 -14.34658 -14.15950 -13.13896 -12.94341 -12.92243 -12.78714 -12.69139 -12.63100 -12.61322 -12.04002 -11.50557 -11.22850 -11.14238 -10.68266 -10.05022 -10.02893 -9.95745 -9.54963 -8.58076 -6.23206 -0.95111 -0.47604 0.70128 1.15737 1.28618 1.42003 1.51846 1.69760 1.84077 1.99379 2.14193 2.65713 2.84301 2.99086 3.06684 3.16168 3.30540 3.49024 3.71305 3.77612 3.95173 4.10620 4.16892 4.28107 4.29205 4.37532 4.59093 4.82172 4.96469 5.01731 5.16141 5.21584 5.44683 5.64016 5.96052 6.25823 6.42179 6.61857 6.75675 6.81046 7.12682 7.70055 8.59009 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.006378 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.617664 B = 4389.376747 C = 4671.453714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.230 4.230 3 C 0.182 3.818 4 N -0.460 5.460 5 C -0.345 4.345 6 H 0.039 0.961 7 C 0.016 3.984 8 N -0.901 5.901 9 Si 0.935 3.065 10 H -0.232 1.232 11 H -0.276 1.276 12 H -0.240 1.240 13 C 0.516 3.484 14 O -0.592 6.592 15 C -0.106 4.106 16 C -0.078 4.078 17 C -0.084 4.084 18 C -0.066 4.066 19 C 0.060 3.940 20 N -0.434 5.434 21 C 0.088 3.912 22 C 0.073 3.927 23 N -0.466 5.466 24 C 0.080 3.920 25 H 0.252 0.748 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.284 0.716 29 H 0.152 0.848 30 H 0.194 0.806 31 H 0.177 0.823 32 H 0.227 0.773 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.104 9.261 18.886 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.231 4.231 3 C 0.061 3.939 4 N -0.181 5.181 5 C -0.472 4.472 6 H 0.057 0.943 7 C -0.188 4.188 8 N -0.537 5.537 9 Si 0.755 3.245 10 H -0.156 1.156 11 H -0.202 1.202 12 H -0.163 1.163 13 C 0.306 3.694 14 O -0.475 6.475 15 C -0.111 4.111 16 C -0.098 4.098 17 C -0.103 4.103 18 C -0.085 4.085 19 C -0.063 4.063 20 N -0.148 5.148 21 C -0.088 4.088 22 C -0.102 4.102 23 N -0.180 5.180 24 C -0.044 4.044 25 H 0.269 0.731 26 H 0.113 0.887 27 H 0.142 0.858 28 H 0.094 0.906 29 H 0.170 0.830 30 H 0.211 0.789 31 H 0.194 0.806 32 H 0.243 0.757 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.690 9.230 18.365 21.327 hybrid contribution 0.181 -0.502 -1.074 1.200 sum -5.508 8.728 17.291 20.137 Atomic orbital electron populations 1.25667 0.96604 0.99338 0.98862 1.23926 0.95595 1.01804 1.01810 1.19325 0.85146 0.98151 0.91275 1.43494 1.57027 1.04949 1.12609 1.18544 1.40666 1.03372 0.84625 0.94346 1.26279 0.96086 0.94643 1.01779 1.69839 1.40518 1.09292 1.34092 0.86070 0.79261 0.80040 0.79145 1.15644 1.20155 1.16343 1.18551 0.80108 0.82484 0.88273 1.90621 1.51562 1.64737 1.40582 1.20015 0.99371 0.97264 0.94468 1.21852 0.97506 0.99194 0.91264 1.21362 0.96963 0.94281 0.97673 1.21342 0.93689 0.96012 0.97474 1.19823 0.97638 0.95228 0.93616 1.68793 1.04803 1.09766 1.31475 1.24796 0.97143 0.99034 0.87811 1.24842 0.93377 0.90911 1.01112 1.68726 1.05534 1.12647 1.31098 1.19486 0.97040 0.96719 0.91111 0.73137 0.88730 0.85763 0.90617 0.83015 0.78898 0.80564 0.75709 0.78071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.57 19.25 74.32 1.43 -5.14 16 2 C -0.23 -9.50 13.58 31.12 0.42 -9.07 16 3 C 0.18 7.70 4.27 84.57 0.36 8.06 16 4 N -0.46 -24.29 2.13 -649.26 -1.38 -25.68 16 5 C -0.34 -21.38 9.36 84.13 0.79 -20.59 16 6 H 0.04 2.82 7.88 -2.91 -0.02 2.80 16 7 C 0.02 0.89 5.26 84.98 0.45 1.34 16 8 N -0.90 -54.34 13.95 21.69 0.30 -54.04 16 9 Si 0.93 39.95 25.24 68.60 1.73 41.68 16 10 H -0.23 -8.52 6.51 99.48 0.65 -7.87 16 11 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.24 -9.49 7.11 99.48 0.71 -8.78 16 13 C 0.52 27.31 6.70 86.64 0.58 27.89 16 14 O -0.59 -37.15 16.64 -4.17 -0.07 -37.22 16 15 C -0.11 -4.35 4.98 -19.87 -0.10 -4.45 16 16 C -0.08 -2.29 7.59 22.57 0.17 -2.12 16 17 C -0.08 -1.63 9.93 21.97 0.22 -1.41 16 18 C -0.07 -1.41 9.97 22.41 0.22 -1.18 16 19 C 0.06 1.77 6.59 40.28 0.27 2.04 16 20 N -0.43 -11.08 10.46 -188.17 -1.97 -13.05 16 21 C 0.09 1.82 11.21 85.10 0.95 2.77 16 22 C 0.07 1.97 11.22 85.08 0.95 2.93 16 23 N -0.47 -18.72 9.69 -187.38 -1.81 -20.54 16 24 C 0.08 3.10 6.59 40.61 0.27 3.36 16 25 H 0.25 6.19 7.80 -4.41 -0.03 6.16 16 26 H 0.10 3.99 3.54 -2.39 -0.01 3.99 16 27 H 0.12 4.21 4.44 -2.38 -0.01 4.20 16 28 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.15 4.01 7.24 -2.91 -0.02 3.99 16 30 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.23 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -91.05 296.78 4.88 -86.17 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.10 Total: 18.25 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 6.99 Total: 4.43 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -4.86 Total: -113.31 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.07 Total: -37.22 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.73 Total: 41.68 kcal Total: -91.05 4.88 -86.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381654439.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.274 kcal (2) G-P(sol) polarization free energy of solvation -91.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds