Wall clock time and date at job start Tue Mar 31 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.30805 * 119.99655 * 2 1 4 4 N 1.35554 * 125.32745 * 180.02562 * 3 2 1 5 5 H 0.96994 * 122.70699 * 359.70715 * 4 3 2 6 6 C 1.37686 * 114.57782 * 179.97438 * 4 3 2 7 7 C 1.46452 * 122.40072 * 179.97438 * 6 4 3 8 8 O 1.21742 * 119.99914 * 174.54715 * 7 6 4 9 9 N 1.34782 * 120.00171 * 354.54805 * 7 6 4 10 10 C 1.46500 * 119.99901 * 185.75822 * 9 7 6 11 11 C 1.53004 * 109.46762 * 183.70394 * 10 9 7 12 12 C 1.50694 * 115.55171 * 306.42255 * 11 10 9 13 13 H 1.08002 * 120.00081 * 145.11155 * 12 11 10 14 14 C 1.37881 * 120.00015 * 325.11543 * 12 11 10 15 15 N 1.31515 * 119.99572 * 349.50539 * 14 12 11 16 16 Si 1.86801 * 120.00002 * 169.50309 * 14 12 11 17 17 H 1.48501 * 109.46701 * 90.00077 * 16 14 12 18 18 H 1.48500 * 109.47126 * 209.99700 * 16 14 12 19 19 H 1.48494 * 109.47172 * 330.00035 * 16 14 12 20 20 C 1.52995 * 117.49510 * 160.75075 * 11 10 9 21 21 C 1.53002 * 117.49569 * 92.09257 * 11 10 9 22 22 C 1.33499 * 115.19994 * 0.02562 * 6 4 3 23 23 S 1.75853 * 109.86712 * 359.97438 * 22 6 4 24 24 H 1.09005 * 109.47128 * 59.99682 * 1 2 3 25 25 H 1.08997 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47215 * 299.99752 * 1 2 3 27 27 H 0.97002 * 119.99770 * 5.75467 * 9 7 6 28 28 H 1.08998 * 109.47051 * 303.69925 * 10 9 7 29 29 H 1.08996 * 109.47133 * 63.70383 * 10 9 7 30 30 H 0.97004 * 119.99198 * 185.04248 * 15 14 12 31 31 H 1.08995 * 117.50758 * 359.97438 * 20 11 10 32 32 H 1.09009 * 117.49547 * 145.02313 * 20 11 10 33 33 H 1.09007 * 117.49826 * 214.97961 * 21 11 10 34 34 H 1.09000 * 117.50203 * 359.97438 * 21 11 10 35 35 H 1.07998 * 125.06761 * 180.02562 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1190 1.1328 0.0000 4 7 3.4686 1.2588 -0.0005 5 1 4.0663 0.4949 0.0033 6 6 3.9225 2.5587 -0.0009 7 6 5.3486 2.8920 -0.0010 8 8 5.7025 4.0525 -0.1015 9 7 6.2693 1.9139 0.1104 10 6 7.6884 2.2548 0.2374 11 6 8.5216 0.9716 0.2541 12 6 8.1142 -0.0545 1.2798 13 1 8.1964 -1.1072 1.0526 14 6 7.6365 0.3505 2.5081 15 7 7.7275 1.6129 2.8653 16 14 6.8601 -0.8940 3.6649 17 1 7.9080 -1.4754 4.5419 18 1 5.8336 -0.2202 4.5001 19 1 6.2218 -1.9754 2.8724 20 6 10.0117 1.0927 -0.0710 21 6 9.0558 0.4588 -1.0848 22 6 2.9694 3.4935 -0.0003 23 16 1.3847 2.7313 0.0003 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 5.9922 0.9843 0.1065 28 1 7.9905 2.8732 -0.6078 29 1 7.8485 2.8041 1.1651 30 1 7.4590 1.8852 3.7568 31 1 10.3985 2.0863 -0.2972 32 1 10.6974 0.4298 0.4568 33 1 9.1130 -0.6209 -1.2236 34 1 8.8134 1.0353 -1.9775 35 1 3.1455 4.5590 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404171522.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:51 Heat of formation + Delta-G solvation = 39.161757 kcal Electronic energy + Delta-G solvation = -19740.250998 eV Core-core repulsion = 16673.087313 eV Total energy + Delta-G solvation = -3067.163684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.27836 -38.31851 -36.80815 -35.09055 -33.41216 -32.31128 -30.43627 -27.40761 -26.37254 -25.60402 -23.50818 -21.50392 -21.25085 -19.91041 -19.44423 -18.27430 -17.44580 -16.42303 -15.66454 -15.42744 -15.03665 -14.89449 -14.36935 -14.25416 -13.97230 -13.88509 -13.33175 -13.09586 -12.78764 -12.60456 -11.92136 -11.65746 -11.54272 -11.14209 -10.91232 -10.60546 -10.40963 -10.35472 -9.97026 -9.67695 -9.46751 -9.33417 -9.27382 -8.96187 -8.45408 -8.13090 -7.37918 -6.20632 -4.30948 1.16480 1.18971 1.67515 2.02663 2.72098 3.13816 3.24643 3.26079 3.52342 3.80428 4.19444 4.74589 4.80640 5.12958 5.30726 5.37757 5.38656 5.52620 5.63497 5.72205 5.88098 6.18046 6.35621 6.43987 6.49137 6.58258 6.76710 6.92815 6.96927 7.14640 7.25792 7.40963 7.65993 7.77522 8.13091 8.19151 8.64694 8.68843 9.30711 10.76143 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.005920 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.444816 B = 4728.339494 C = 5528.131025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.576 5.576 3 C 0.362 3.638 4 N -0.611 5.611 5 H 0.428 0.572 6 C 0.090 3.910 7 C 0.566 3.434 8 O -0.536 6.536 9 N -0.675 5.675 10 C 0.160 3.840 11 C 0.034 3.966 12 C -0.502 4.502 13 H 0.063 0.937 14 C 0.076 3.924 15 N -0.867 5.867 16 Si 0.886 3.114 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.270 1.270 20 C -0.193 4.193 21 C -0.211 4.211 22 C -0.194 4.194 23 S 0.007 5.993 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.398 0.602 28 H 0.035 0.965 29 H 0.115 0.885 30 H 0.265 0.735 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.458 0.997 -4.994 11.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.310 5.310 3 C -0.023 4.023 4 N -0.239 5.239 5 H 0.270 0.730 6 C -0.025 4.025 7 C 0.347 3.653 8 O -0.415 6.415 9 N -0.321 5.321 10 C 0.038 3.962 11 C 0.033 3.967 12 C -0.539 4.539 13 H 0.082 0.918 14 C -0.129 4.129 15 N -0.503 5.503 16 Si 0.713 3.287 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.231 4.231 21 C -0.249 4.249 22 C -0.337 4.337 23 S 0.247 5.753 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.233 0.767 28 H 0.053 0.947 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -11.525 1.503 -4.899 12.613 hybrid contribution 0.778 -1.239 0.777 1.656 sum -10.747 0.265 -4.122 11.514 Atomic orbital electron populations 1.22156 0.85724 1.02972 1.00512 1.71748 1.09535 1.18699 1.31033 1.24239 0.87935 0.93351 0.96802 1.41653 1.04378 1.07549 1.70286 0.73045 1.19537 0.95665 0.82989 1.04310 1.16998 0.82870 0.86273 0.79153 1.90832 1.80166 1.18900 1.51564 1.45791 1.08326 1.08608 1.69424 1.21174 0.76620 0.96610 1.01820 1.19180 0.90933 0.94315 0.92233 1.20502 1.43472 0.91833 0.98117 0.91834 1.24978 0.94998 0.95139 0.97811 1.69825 1.45865 1.15273 1.19311 0.86664 0.79519 0.81469 0.81037 1.20394 1.20958 1.19469 1.22921 0.96168 0.99783 1.04260 1.22986 1.08779 0.99187 0.93930 1.24861 0.92280 1.03849 1.12684 1.85312 1.08177 0.98559 1.83263 0.92885 0.89667 0.92896 0.76672 0.94702 0.86788 0.92442 0.91380 0.90084 0.90503 0.91252 0.79354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 59.85 0.62 1.05 16 2 N -0.58 -8.61 11.05 -68.30 -0.75 -9.36 16 3 C 0.36 5.36 8.33 -89.65 -0.75 4.61 16 4 N -0.61 -9.26 5.63 -10.73 -0.06 -9.32 16 5 H 0.43 6.27 7.58 -40.82 -0.31 5.96 16 6 C 0.09 1.45 6.70 -83.59 -0.56 0.89 16 7 C 0.57 10.80 7.75 -12.95 -0.10 10.70 16 8 O -0.54 -11.58 16.61 5.15 0.09 -11.49 16 9 N -0.67 -13.27 5.27 -61.68 -0.33 -13.59 16 10 C 0.16 3.51 4.75 -4.04 -0.02 3.49 16 11 C 0.03 0.76 2.00 -155.66 -0.31 0.45 16 12 C -0.50 -12.10 8.27 -34.44 -0.28 -12.38 16 13 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 14 C 0.08 1.85 5.13 -17.82 -0.09 1.76 16 15 N -0.87 -22.10 10.74 55.43 0.60 -21.50 16 16 Si 0.89 19.47 29.55 -169.99 -5.02 14.45 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 C -0.19 -4.02 9.96 -26.70 -0.27 -4.28 16 21 C -0.21 -4.17 9.92 -26.69 -0.26 -4.43 16 22 C -0.19 -2.77 10.64 29.07 0.31 -2.46 16 23 S 0.01 0.09 22.35 -107.50 -2.40 -2.31 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.40 7.43 6.52 -40.82 -0.27 7.16 16 28 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 29 H 0.11 2.85 6.04 -51.93 -0.31 2.54 16 30 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.71 8.14 -51.92 -0.42 1.29 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.19 2.47 7.95 -52.49 -0.42 2.05 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -26.85 315.65 -9.07 -35.92 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -4.23 Total: 13.06 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.71 Total: -0.60 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.54 Total: -53.78 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.40 Total: -2.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.85 -9.07 -35.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404171522.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.082 kcal (2) G-P(sol) polarization free energy of solvation -26.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds