Wall clock time and date at job start Tue Mar 31 2020 05:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.30805 * 119.99655 * 2 1 4 4 N 1.35554 * 125.32745 * 180.02562 * 3 2 1 5 5 H 0.96994 * 122.70699 * 359.70715 * 4 3 2 6 6 C 1.37686 * 114.57782 * 179.97438 * 4 3 2 7 7 C 1.46452 * 122.40072 * 179.97438 * 6 4 3 8 8 O 1.21742 * 119.99914 * 174.54715 * 7 6 4 9 9 N 1.34782 * 120.00171 * 354.54805 * 7 6 4 10 10 C 1.46500 * 119.99901 * 185.75822 * 9 7 6 11 11 C 1.53004 * 109.46762 * 183.70394 * 10 9 7 12 12 C 1.50694 * 115.55171 * 306.42255 * 11 10 9 13 13 H 1.08002 * 120.00081 * 145.11155 * 12 11 10 14 14 C 1.37881 * 120.00015 * 325.11543 * 12 11 10 15 15 N 1.31515 * 119.99572 * 349.50539 * 14 12 11 16 16 Si 1.86801 * 120.00002 * 169.50309 * 14 12 11 17 17 H 1.48501 * 109.46701 * 90.00077 * 16 14 12 18 18 H 1.48500 * 109.47126 * 209.99700 * 16 14 12 19 19 H 1.48494 * 109.47172 * 330.00035 * 16 14 12 20 20 C 1.52995 * 117.49510 * 160.75075 * 11 10 9 21 21 C 1.53002 * 117.49569 * 92.09257 * 11 10 9 22 22 C 1.33499 * 115.19994 * 0.02562 * 6 4 3 23 23 S 1.75853 * 109.86712 * 359.97438 * 22 6 4 24 24 H 1.09005 * 109.47128 * 59.99682 * 1 2 3 25 25 H 1.08997 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47215 * 299.99752 * 1 2 3 27 27 H 0.97002 * 119.99770 * 5.75467 * 9 7 6 28 28 H 1.08998 * 109.47051 * 303.69925 * 10 9 7 29 29 H 1.08996 * 109.47133 * 63.70383 * 10 9 7 30 30 H 0.97004 * 119.99198 * 185.04248 * 15 14 12 31 31 H 1.08995 * 117.50758 * 359.97438 * 20 11 10 32 32 H 1.09009 * 117.49547 * 145.02313 * 20 11 10 33 33 H 1.09007 * 117.49826 * 214.97961 * 21 11 10 34 34 H 1.09000 * 117.50203 * 359.97438 * 21 11 10 35 35 H 1.07998 * 125.06761 * 180.02562 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1190 1.1328 0.0000 4 7 3.4686 1.2588 -0.0005 5 1 4.0663 0.4949 0.0033 6 6 3.9225 2.5587 -0.0009 7 6 5.3486 2.8920 -0.0010 8 8 5.7025 4.0525 -0.1015 9 7 6.2693 1.9139 0.1104 10 6 7.6884 2.2548 0.2374 11 6 8.5216 0.9716 0.2541 12 6 8.1142 -0.0545 1.2798 13 1 8.1964 -1.1072 1.0526 14 6 7.6365 0.3505 2.5081 15 7 7.7275 1.6129 2.8653 16 14 6.8601 -0.8940 3.6649 17 1 7.9080 -1.4754 4.5419 18 1 5.8336 -0.2202 4.5001 19 1 6.2218 -1.9754 2.8724 20 6 10.0117 1.0927 -0.0710 21 6 9.0558 0.4588 -1.0848 22 6 2.9694 3.4935 -0.0003 23 16 1.3847 2.7313 0.0003 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 5.9922 0.9843 0.1065 28 1 7.9905 2.8732 -0.6078 29 1 7.8485 2.8041 1.1651 30 1 7.4590 1.8852 3.7568 31 1 10.3985 2.0863 -0.2972 32 1 10.6974 0.4298 0.4568 33 1 9.1130 -0.6209 -1.2236 34 1 8.8134 1.0353 -1.9775 35 1 3.1455 4.5590 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404171522.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:50 Heat of formation + Delta-G solvation = 21.743050 kcal Electronic energy + Delta-G solvation = -19741.006329 eV Core-core repulsion = 16673.087313 eV Total energy + Delta-G solvation = -3067.919016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.59318 -39.72010 -38.46414 -36.18458 -35.00371 -34.16993 -31.59560 -28.77671 -27.74147 -27.30682 -24.83819 -22.98049 -22.60367 -21.30024 -21.09182 -19.68266 -18.66951 -18.03255 -16.96381 -16.84909 -16.57950 -16.53215 -15.79114 -15.45955 -15.41880 -15.05356 -14.88381 -14.40965 -14.21469 -13.62044 -13.55694 -13.43877 -12.93477 -12.69251 -12.65294 -12.32881 -12.05509 -11.60470 -11.52127 -11.16636 -11.06211 -10.73300 -10.66668 -10.36406 -10.18781 -9.82561 -8.46556 -8.06656 -6.21480 -0.06868 0.11705 0.52634 0.89099 1.37391 1.45260 1.50463 1.59323 2.07578 2.32629 2.38704 3.00670 3.61325 3.69510 3.81859 4.21817 4.28611 4.42564 4.51760 4.54213 4.60270 4.71931 4.77536 4.86302 4.97712 5.08245 5.23684 5.28541 5.50603 5.58454 5.63735 5.84409 5.90372 6.35255 6.53389 6.66857 6.82412 7.13221 7.41561 8.87492 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.005920 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.444816 B = 4728.339494 C = 5528.131025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.598 5.598 3 C 0.343 3.657 4 N -0.613 5.613 5 H 0.427 0.573 6 C 0.071 3.929 7 C 0.568 3.432 8 O -0.567 6.567 9 N -0.675 5.675 10 C 0.172 3.828 11 C 0.007 3.993 12 C -0.506 4.506 13 H 0.059 0.941 14 C 0.044 3.956 15 N -0.889 5.889 16 Si 0.935 3.065 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.263 1.263 20 C -0.195 4.195 21 C -0.186 4.186 22 C -0.183 4.183 23 S 0.067 5.933 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.403 0.597 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.260 0.740 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 0.557 -5.674 13.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.333 5.333 3 C -0.043 4.043 4 N -0.241 5.241 5 H 0.268 0.732 6 C -0.045 4.045 7 C 0.351 3.649 8 O -0.448 6.448 9 N -0.321 5.321 10 C 0.049 3.951 11 C 0.007 3.993 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.159 4.159 15 N -0.526 5.526 16 Si 0.761 3.239 17 H -0.207 1.207 18 H -0.218 1.218 19 H -0.187 1.187 20 C -0.234 4.234 21 C -0.224 4.224 22 C -0.327 4.327 23 S 0.307 5.693 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.238 0.762 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -13.080 1.033 -5.591 14.263 hybrid contribution 1.192 -1.096 0.959 1.882 sum -11.889 -0.063 -4.632 12.759 Atomic orbital electron populations 1.22319 0.83870 1.04202 1.01451 1.71729 1.11480 1.19425 1.30702 1.24428 0.87817 0.94580 0.97428 1.41585 1.04786 1.07061 1.70644 0.73231 1.19072 0.94173 0.83947 1.07266 1.17303 0.84003 0.85609 0.77953 1.90803 1.81066 1.19951 1.52939 1.45684 1.07732 1.09039 1.69694 1.20827 0.77964 0.96219 1.00118 1.19236 0.91881 0.94464 0.93755 1.20672 1.43118 0.91987 0.98575 0.92283 1.25445 0.95453 0.96093 0.98903 1.69969 1.46997 1.16429 1.19205 0.85905 0.78472 0.79991 0.79502 1.20732 1.21759 1.18733 1.22933 0.95328 1.00430 1.04692 1.22976 1.06353 0.99722 0.93306 1.25200 0.93415 1.04325 1.09727 1.85102 1.05721 0.96235 1.82202 0.91564 0.88489 0.92030 0.76163 0.94593 0.90071 0.93014 0.90418 0.90654 0.89847 0.89549 0.78282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.38 127.77 1.33 1.98 16 2 N -0.60 -16.81 11.05 -370.00 -4.09 -20.89 16 3 C 0.34 9.54 8.33 180.01 1.50 11.04 16 4 N -0.61 -18.04 5.63 -187.85 -1.06 -19.10 16 5 H 0.43 12.35 7.58 -92.71 -0.70 11.64 16 6 C 0.07 2.22 6.70 39.29 0.26 2.48 16 7 C 0.57 21.75 7.75 86.38 0.67 22.42 16 8 O -0.57 -24.69 16.61 -4.48 -0.07 -24.76 16 9 N -0.67 -26.69 5.27 -467.26 -2.46 -29.15 16 10 C 0.17 7.61 4.75 86.38 0.41 8.02 16 11 C 0.01 0.32 2.00 -52.93 -0.11 0.22 16 12 C -0.51 -24.27 8.27 25.60 0.21 -24.05 16 13 H 0.06 2.83 7.84 -2.91 -0.02 2.81 16 14 C 0.04 2.13 5.13 84.66 0.43 2.56 16 15 N -0.89 -46.01 10.74 21.45 0.23 -45.78 16 16 Si 0.93 39.97 29.55 68.60 2.03 42.00 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 20 C -0.20 -7.98 9.96 30.62 0.30 -7.68 16 21 C -0.19 -7.03 9.92 30.62 0.30 -6.73 16 22 C -0.18 -4.93 10.64 66.75 0.71 -4.22 16 23 S 0.07 1.53 22.35 -56.49 -1.26 0.26 16 24 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.40 15.07 6.52 -92.71 -0.60 14.46 16 28 H 0.04 1.55 8.06 -2.39 -0.02 1.53 16 29 H 0.08 4.17 6.04 -2.39 -0.01 4.16 16 30 H 0.26 13.26 8.32 -92.71 -0.77 12.49 16 31 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 33 H 0.08 3.04 8.14 -2.38 -0.02 3.02 16 34 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.20 4.86 7.95 -2.91 -0.02 4.84 16 Total: -1.00 -56.16 315.65 -0.83 -56.99 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.17 Total: 34.39 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.03 Total: 6.05 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -7.38 Total: -114.93 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.07 Total: -24.76 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.26 Total: 0.26 kcal Total: -56.16 -0.83 -56.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404171522.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.733 kcal (2) G-P(sol) polarization free energy of solvation -56.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds