Wall clock time and date at job start Tue Mar 31 2020 05:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99728 * 2 1 4 4 C 1.52995 * 109.44989 * 302.04889 * 3 2 1 5 5 F 1.39899 * 109.47226 * 185.81644 * 4 3 2 6 6 F 1.39899 * 109.47177 * 305.81711 * 4 3 2 7 7 F 1.39902 * 109.47161 * 65.81525 * 4 3 2 8 8 C 1.53048 * 109.46136 * 62.01516 * 3 2 1 9 9 C 1.53195 * 109.31027 * 58.65654 * 8 3 2 10 10 N 1.46926 * 108.77812 * 54.63384 * 9 8 3 11 11 C 1.34777 * 120.63138 * 126.36549 * 10 9 8 12 12 O 1.21684 * 120.00052 * 175.09478 * 11 10 9 13 13 C 1.46377 * 119.99778 * 355.09806 * 11 10 9 14 14 H 1.07998 * 120.00029 * 24.19466 * 13 11 10 15 15 C 1.40049 * 119.99839 * 204.19849 * 13 11 10 16 16 N 1.30672 * 120.00118 * 178.65745 * 15 13 11 17 17 Si 1.86797 * 119.99928 * 358.65648 * 15 13 11 18 18 H 1.48502 * 109.47013 * 274.40113 * 17 15 13 19 19 H 1.48501 * 109.47293 * 34.40190 * 17 15 13 20 20 H 1.48500 * 109.47189 * 154.40321 * 17 15 13 21 21 C 1.46928 * 118.73757 * 306.64549 * 10 9 8 22 22 C 1.52756 * 109.01176 * 53.30537 * 21 10 9 23 23 H 1.08995 * 109.47596 * 310.63850 * 1 2 3 24 24 H 1.09004 * 109.46964 * 70.64059 * 1 2 3 25 25 H 1.08998 * 109.47239 * 190.63627 * 1 2 3 26 26 H 1.08992 * 109.49487 * 298.70467 * 8 3 2 27 27 H 1.08995 * 109.52377 * 178.62261 * 8 3 2 28 28 H 1.09007 * 109.58319 * 294.84607 * 9 8 3 29 29 H 1.08996 * 109.70329 * 174.49356 * 9 8 3 30 30 H 0.96991 * 120.00085 * 179.97438 * 16 15 13 31 31 H 1.09003 * 109.58611 * 173.14403 * 21 10 9 32 32 H 1.09003 * 109.58242 * 293.56583 * 21 10 9 33 33 H 1.08997 * 109.56734 * 185.55244 * 22 21 10 34 34 H 1.09010 * 109.38531 * 65.51298 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5180 2.0822 -1.2228 5 9 2.1865 3.3090 -1.2961 6 9 1.7756 1.3409 -2.3809 7 9 0.1418 2.3071 -1.1095 8 6 1.5989 2.0467 1.2743 9 6 2.0632 1.2486 2.4968 10 7 3.5071 1.0031 2.3808 11 6 4.3444 1.3461 3.3797 12 8 5.5245 1.0574 3.3106 13 6 3.8342 2.0660 4.5476 14 1 2.7909 1.9892 4.8159 15 6 4.6990 2.8543 5.3171 16 7 4.2383 3.5178 6.3443 17 14 6.5110 2.9572 4.8752 18 1 7.2382 1.8234 5.5005 19 1 6.6652 2.8907 3.3997 20 1 7.0702 4.2392 5.3740 21 6 4.0217 0.3821 1.1526 22 6 3.5349 1.1847 -0.0525 23 1 -0.3634 0.6693 0.7798 24 1 -0.3633 0.3407 -0.9696 25 1 -0.3633 -1.0100 0.1897 26 1 0.5145 2.1528 1.2995 27 1 2.0615 3.0336 1.2870 28 1 1.5326 0.2972 2.5350 29 1 1.8609 1.8165 3.4048 30 1 4.8373 4.0634 6.8774 31 1 5.1116 0.3806 1.1729 32 1 3.6542 -0.6414 1.0791 33 1 3.8283 0.6775 -0.9715 34 1 3.9796 2.1797 -0.0281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409428641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:14 Heat of formation + Delta-G solvation = -233.387566 kcal Electronic energy + Delta-G solvation = -24051.884856 eV Core-core repulsion = 19956.000184 eV Total energy + Delta-G solvation = -4095.884672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.25440 -47.77114 -47.65177 -39.84003 -37.80613 -35.31086 -32.87020 -32.10086 -30.98387 -27.63922 -26.72905 -26.26442 -23.23927 -23.01219 -20.75691 -19.34349 -18.43884 -18.35221 -18.07710 -16.95217 -16.06704 -15.69024 -15.41342 -14.91784 -14.76946 -14.54334 -14.49213 -14.26208 -14.09703 -13.95482 -13.84430 -13.82648 -12.95846 -12.86412 -12.68425 -12.35619 -12.21639 -12.01312 -11.76247 -11.36897 -11.06790 -10.87686 -10.83403 -10.47642 -10.32047 -9.88618 -9.47551 -9.03648 -7.98216 -7.61389 -6.62992 -4.84768 2.58147 3.25148 3.42312 3.45902 3.59865 3.71473 3.86671 4.07447 4.16309 4.21730 4.50218 4.62100 4.68256 5.14081 5.20780 5.27604 5.30904 5.49115 5.55207 5.60439 5.66402 5.75885 5.81707 6.18561 6.25220 6.32545 6.47801 6.76599 7.01548 7.56259 7.83438 8.27358 8.67662 9.07584 9.95398 10.38356 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.028500 B = 0.005618 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.224598 B = 4982.963242 C = 5052.150939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.346 6.346 3 C 0.088 3.912 4 C 0.424 3.576 5 F -0.176 7.176 6 F -0.179 7.179 7 F -0.184 7.184 8 C -0.164 4.164 9 C 0.132 3.868 10 N -0.631 5.631 11 C 0.558 3.442 12 O -0.610 6.610 13 C -0.535 4.535 14 H 0.091 0.909 15 C 0.101 3.899 16 N -0.833 5.833 17 Si 0.955 3.045 18 H -0.278 1.278 19 H -0.256 1.256 20 H -0.319 1.319 21 C 0.128 3.872 22 C -0.123 4.123 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.282 0.718 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.749 -2.857 -13.530 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.264 6.264 3 C 0.046 3.954 4 C 0.370 3.630 5 F -0.158 7.158 6 F -0.160 7.160 7 F -0.166 7.166 8 C -0.202 4.202 9 C 0.008 3.992 10 N -0.366 5.366 11 C 0.366 3.634 12 O -0.500 6.500 13 C -0.571 4.571 14 H 0.109 0.891 15 C -0.116 4.116 16 N -0.464 5.464 17 Si 0.786 3.214 18 H -0.204 1.204 19 H -0.180 1.180 20 H -0.250 1.250 21 C 0.004 3.996 22 C -0.161 4.161 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.080 -3.062 -13.420 15.961 hybrid contribution 0.097 0.500 -0.508 0.719 sum -7.982 -2.561 -13.928 16.256 Atomic orbital electron populations 1.23227 0.80635 1.03722 1.01391 1.88128 1.20292 1.23716 1.94217 1.22769 0.97326 0.84766 0.90519 1.21736 0.75377 0.79025 0.86879 1.93187 1.80267 1.45646 1.96691 1.93175 1.93717 1.76597 1.52508 1.93138 1.32347 1.94934 1.96149 1.22637 1.02260 1.01166 0.94174 1.21341 0.82113 0.98637 0.97120 1.47796 1.06550 1.65238 1.16997 1.18402 0.84094 0.78238 0.82644 1.90294 1.17908 1.60060 1.81774 1.20717 0.98419 1.29454 1.08516 0.89119 1.25693 1.01905 0.91710 0.92270 1.69524 1.38354 1.23769 1.14703 0.85483 0.80628 0.74569 0.80702 1.20375 1.18043 1.25026 1.21017 1.00643 0.95114 0.82845 1.22002 0.88808 1.03864 1.01467 0.92370 0.93105 0.88924 0.89850 0.88935 0.92675 0.87401 0.90827 0.88880 0.92154 0.89671 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.54 101.05 0.96 1.03 16 2 O -0.35 -4.64 8.93 -35.23 -0.31 -4.96 16 3 C 0.09 1.22 0.35 -90.58 -0.03 1.19 16 4 C 0.42 5.63 2.07 37.16 0.08 5.70 16 5 F -0.18 -2.46 16.34 2.25 0.04 -2.42 16 6 F -0.18 -2.40 16.85 2.25 0.04 -2.36 16 7 F -0.18 -2.30 13.66 2.25 0.03 -2.27 16 8 C -0.16 -2.34 4.32 -26.61 -0.12 -2.46 16 9 C 0.13 2.26 6.11 -3.71 -0.02 2.23 16 10 N -0.63 -13.04 2.98 -174.69 -0.52 -13.56 16 11 C 0.56 14.32 7.20 -12.99 -0.09 14.23 16 12 O -0.61 -17.13 11.80 5.20 0.06 -17.07 16 13 C -0.54 -14.53 9.17 -35.63 -0.33 -14.86 16 14 H 0.09 2.44 6.30 -52.49 -0.33 2.10 16 15 C 0.10 2.82 5.52 -17.37 -0.10 2.72 16 16 N -0.83 -23.19 13.92 55.55 0.77 -22.42 16 17 Si 0.95 24.66 26.14 -169.99 -4.44 20.22 16 18 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 19 H -0.26 -6.89 6.31 56.52 0.36 -6.54 16 20 H -0.32 -7.86 7.11 56.52 0.40 -7.46 16 21 C 0.13 2.26 6.15 -3.93 -0.02 2.23 16 22 C -0.12 -1.81 4.83 -26.84 -0.13 -1.94 16 23 H 0.06 0.58 6.03 -51.93 -0.31 0.26 16 24 H 0.05 0.52 6.31 -51.93 -0.33 0.19 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.00 5.92 -51.93 -0.31 0.70 16 27 H 0.09 1.40 8.00 -51.93 -0.42 0.99 16 28 H 0.06 0.87 7.81 -51.92 -0.41 0.46 16 29 H 0.11 2.00 5.46 -51.93 -0.28 1.72 16 30 H 0.28 7.25 8.29 -40.82 -0.34 6.91 16 31 H 0.09 1.79 7.04 -51.93 -0.37 1.42 16 32 H 0.06 1.01 7.81 -51.93 -0.41 0.60 16 33 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 34 H 0.09 1.40 7.72 -51.92 -0.40 1.00 16 LS Contribution 279.13 15.07 4.21 4.21 Total: -1.00 -30.56 279.13 -3.50 -34.05 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -3.57 Total: -3.51 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 0.20 Total: 10.08 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.25 Total: -35.98 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.25 Total: -22.03 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.11 Total: -7.04 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -4.44 Total: 20.22 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.56 -3.50 -34.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409428641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.334 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds