Wall clock time and date at job start Tue Mar 31 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76206 * 102.99957 * 2 1 4 4 C 1.39197 * 119.71167 * 180.25200 * 3 2 1 5 5 C 1.38270 * 119.09364 * 180.25405 * 4 3 2 6 6 C 1.50700 * 120.74295 * 179.78353 * 5 4 3 7 7 N 1.46498 * 109.46769 * 269.71203 * 6 5 4 8 8 C 1.34777 * 119.99828 * 179.72341 * 7 6 5 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 6 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47138 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00019 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99907 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47496 * 89.99791 * 16 14 12 18 18 H 1.48494 * 109.47146 * 210.00132 * 16 14 12 19 19 H 1.48504 * 109.46915 * 329.99781 * 16 14 12 20 20 C 1.38908 * 118.51010 * 359.50113 * 5 4 3 21 21 C 1.38027 * 119.34296 * 0.25765 * 20 5 4 22 22 N 1.31964 * 120.86160 * 359.97438 * 21 20 5 23 23 H 1.08998 * 109.46732 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46944 * 299.99938 * 1 2 3 25 25 H 1.08993 * 109.47087 * 59.99708 * 1 2 3 26 26 H 1.08000 * 120.45382 * 0.02562 * 4 3 2 27 27 H 1.09004 * 109.47210 * 149.71561 * 6 5 4 28 28 H 1.08994 * 109.47121 * 29.71530 * 6 5 4 29 29 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 30 30 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 31 31 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 32 32 H 1.09006 * 109.46868 * 59.99976 * 11 10 8 33 33 H 0.97010 * 119.99768 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.32444 * 180.23476 * 20 5 4 35 35 H 1.07996 * 119.57377 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5436 2.1172 -0.0053 5 6 3.8401 3.4677 0.0001 6 6 5.2703 3.9424 -0.0005 7 7 5.7341 4.0967 1.3806 8 6 6.9936 4.5088 1.6264 9 8 7.7432 4.7575 0.7019 10 7 7.4221 4.6453 2.8969 11 6 8.7909 5.0938 3.1641 12 6 9.0152 5.1633 4.6527 13 1 8.2180 4.8993 5.3319 14 6 10.2385 5.5628 5.1477 15 7 10.4343 5.6229 6.4467 16 14 11.6175 6.0187 3.9731 17 1 11.5468 7.4699 3.6660 18 1 12.9264 5.7092 4.6025 19 1 11.4757 5.2394 2.7170 20 6 2.7900 4.3771 0.0001 21 6 1.4910 3.9103 0.0001 22 7 1.2370 2.6154 -0.0004 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 4.3355 1.3829 -0.0099 27 1 5.3347 4.9014 -0.5146 28 1 5.8953 3.2121 -0.5143 29 1 5.1362 3.8980 2.1181 30 1 6.8239 4.4473 3.6344 31 1 9.4966 4.3903 2.7224 32 1 8.9413 6.0814 2.7279 33 1 11.2949 5.9044 6.7950 34 1 2.9881 5.4387 0.0004 35 1 0.6718 4.6140 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426452519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:35 Heat of formation + Delta-G solvation = -0.266872 kcal Electronic energy + Delta-G solvation = -18403.289566 eV Core-core repulsion = 15334.416128 eV Total energy + Delta-G solvation = -3068.873438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51966 -39.26014 -35.49280 -34.19460 -32.66762 -32.10015 -31.63653 -29.26888 -28.20798 -26.36526 -24.01207 -22.70996 -21.86821 -20.36888 -18.58011 -17.69360 -16.96164 -16.46486 -16.30082 -15.89252 -15.19538 -14.97784 -14.71673 -14.36182 -14.25266 -13.91548 -13.62005 -13.31461 -13.16935 -13.10578 -12.53949 -12.32553 -12.22539 -11.86162 -10.98812 -10.86298 -10.75791 -10.37641 -10.09342 -9.97724 -9.95646 -9.58709 -9.45619 -8.96219 -8.75588 -8.04536 -7.91377 -6.20396 -4.22426 0.63369 0.77887 1.12223 1.91306 3.09877 3.28288 3.35040 3.43883 3.52818 3.75067 4.12900 4.29178 4.34743 4.68109 4.75124 4.78061 4.85048 4.88103 4.95346 5.15179 5.25228 5.42983 5.44587 5.48394 5.64023 6.00997 6.21827 6.62388 6.72036 7.11199 7.21990 7.37283 7.38414 7.53195 8.27474 8.66706 8.80448 9.16112 9.40596 10.91564 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032163 B = 0.002822 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.349505 B = 9919.528925 C =10187.714983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.078 6.078 3 C 0.117 3.883 4 C -0.130 4.130 5 C -0.040 4.040 6 C 0.181 3.819 7 N -0.752 5.752 8 C 0.696 3.304 9 O -0.602 6.602 10 N -0.721 5.721 11 C 0.238 3.762 12 C -0.543 4.543 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C -0.159 4.159 21 C 0.113 3.887 22 N -0.490 5.490 23 H 0.102 0.898 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.143 0.857 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.395 0.605 30 H 0.393 0.607 31 H 0.024 0.976 32 H 0.019 0.981 33 H 0.267 0.733 34 H 0.142 0.858 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.063 -7.915 -13.572 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.161 5.839 3 C -0.131 4.131 4 C -0.157 4.157 5 C -0.050 4.050 6 C 0.057 3.943 7 N -0.410 5.410 8 C 0.396 3.604 9 O -0.482 6.482 10 N -0.373 5.373 11 C 0.116 3.884 12 C -0.581 4.581 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.530 5.530 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.184 1.184 20 C -0.182 4.182 21 C -0.047 4.047 22 N -0.203 5.203 23 H 0.121 0.879 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.160 0.840 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.228 0.772 30 H 0.226 0.774 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.159 0.841 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.407 -8.967 -14.267 26.465 hybrid contribution 0.160 1.536 0.277 1.569 sum -20.247 -7.431 -13.990 25.708 Atomic orbital electron populations 1.23447 0.93664 1.06090 1.06691 1.85661 1.07848 0.98880 1.91528 1.23021 0.91991 0.98411 0.99686 1.21635 0.95900 0.96374 1.01753 1.20307 0.96032 0.92835 0.95792 1.19929 0.88367 1.01961 0.84086 1.45071 1.13497 1.74999 1.07408 1.16078 0.81274 0.78610 0.84454 1.90876 1.55183 1.58401 1.43706 1.45398 1.16849 1.70667 1.04385 1.19376 0.77552 0.94586 0.96928 1.21091 1.00123 1.47522 0.89332 0.90304 1.24783 0.98311 0.94383 0.95166 1.69882 1.24598 1.46853 1.11714 0.86808 0.81396 0.79706 0.81731 1.19856 1.20935 1.18408 1.22115 0.93129 1.01297 1.01656 1.22706 0.96144 0.91416 0.94424 1.68012 1.34933 1.02839 1.14510 0.87902 0.89427 0.89494 0.83963 0.90274 0.90390 0.77190 0.77398 0.95841 0.96318 0.92267 0.84066 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 10.02 101.05 1.01 0.14 16 2 S -0.08 -0.71 22.55 -107.50 -2.42 -3.14 16 3 C 0.12 1.23 7.00 -16.92 -0.12 1.12 16 4 C -0.13 -1.33 9.54 -39.21 -0.37 -1.70 16 5 C -0.04 -0.39 5.28 -104.36 -0.55 -0.94 16 6 C 0.18 2.13 5.85 -5.19 -0.03 2.10 16 7 N -0.75 -10.45 5.55 -66.41 -0.37 -10.82 16 8 C 0.70 13.45 8.57 -86.92 -0.74 12.71 16 9 O -0.60 -13.99 16.34 5.28 0.09 -13.90 16 10 N -0.72 -14.74 5.55 -66.41 -0.37 -15.11 16 11 C 0.24 5.91 4.50 -5.19 -0.02 5.88 16 12 C -0.54 -14.93 9.83 -34.44 -0.34 -15.27 16 13 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 16 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 20 C -0.16 -1.37 9.81 -39.41 -0.39 -1.76 16 21 C 0.11 0.97 11.17 -17.57 -0.20 0.77 16 22 N -0.49 -5.07 9.43 -12.11 -0.11 -5.19 16 23 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 28 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 29 H 0.39 4.62 8.48 -40.82 -0.35 4.27 16 30 H 0.39 7.06 8.34 -40.82 -0.34 6.72 16 31 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 32 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -33.45 321.17 -8.50 -41.95 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.41 Total: 5.18 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.85 Total: 5.15 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.08 Total: -56.91 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -2.42 Total: -3.14 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.45 -8.50 -41.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426452519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.684 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds