Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47096 * 2 1 4 4 C 1.53001 * 109.47380 * 119.99479 * 2 1 3 5 5 C 1.50699 * 109.47076 * 295.00886 * 4 2 1 6 6 C 1.38264 * 119.99683 * 89.99539 * 5 4 2 7 7 C 1.38220 * 120.02583 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.01498 * 0.02562 * 7 6 5 9 9 C 1.38335 * 119.98779 * 359.97438 * 8 7 6 10 10 Cl 1.73595 * 120.01468 * 179.72696 * 9 8 7 11 11 C 1.38189 * 119.99118 * 269.99129 * 5 4 2 12 12 C 1.50698 * 109.47685 * 239.99884 * 2 1 3 13 13 O 1.21276 * 120.00284 * 240.00295 * 12 2 1 14 14 N 1.34777 * 120.00050 * 59.99743 * 12 2 1 15 15 C 1.46497 * 120.00230 * 180.02562 * 14 12 2 16 16 C 1.50703 * 109.47214 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99789 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99899 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00038 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99818 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46901 * 90.00033 * 20 18 16 22 22 H 1.48500 * 109.46761 * 209.99748 * 20 18 16 23 23 H 1.48495 * 109.47011 * 329.99941 * 20 18 16 24 24 H 1.08997 * 109.47234 * 300.00156 * 1 2 3 25 25 H 1.09004 * 109.46946 * 60.00572 * 1 2 3 26 26 H 1.09001 * 109.47096 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47749 * 175.00413 * 4 2 1 28 28 H 1.09003 * 109.46923 * 55.00335 * 4 2 1 29 29 H 1.08000 * 119.98449 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.99055 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.00683 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.01014 * 359.97438 * 11 5 4 33 33 H 0.97005 * 120.00128 * 0.02562 * 14 12 2 34 34 H 1.08997 * 109.47186 * 300.00424 * 15 14 12 35 35 H 1.09001 * 109.46962 * 60.00317 * 15 14 12 36 36 H 0.97002 * 119.99926 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 6 0.4351 -0.2051 3.0997 7 6 0.0689 0.5081 4.2257 8 6 0.9082 1.4843 4.7292 9 6 2.1150 1.7471 4.1062 10 17 3.1663 2.9778 4.7337 11 6 2.4811 1.0328 2.9790 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1191 14 7 1.7069 -0.2500 -2.4545 15 6 2.1948 -0.9409 -3.6507 16 6 1.6921 -0.2308 -4.8812 17 1 1.0715 0.6475 -4.7821 18 6 2.0244 -0.7026 -6.1334 19 7 2.7805 -1.7718 -6.2540 20 14 1.4018 0.1780 -7.6587 21 1 2.3806 1.2189 -8.0635 22 1 1.2357 -0.8014 -8.7625 23 1 0.0942 0.8165 -7.3625 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1263 -0.7993 1.2057 28 1 1.6055 -1.7197 1.2953 29 1 -0.2207 -0.9680 2.7069 30 1 -0.8735 0.3030 4.7118 31 1 0.6221 2.0411 5.6093 32 1 3.4234 1.2372 2.4925 33 1 1.1494 0.5388 -2.5436 34 1 3.2848 -0.9413 -3.6507 35 1 1.8311 -1.9684 -3.6505 36 1 3.0146 -2.1035 -7.1350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427645104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = -45.828442 kcal Electronic energy + Delta-G solvation = -18771.537530 eV Core-core repulsion = 15666.351936 eV Total energy + Delta-G solvation = -3105.185593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95377 -38.85250 -36.74151 -34.81598 -34.17275 -32.37891 -31.21343 -30.71057 -27.31780 -26.77338 -23.95745 -22.84078 -22.27936 -20.97038 -19.31792 -17.34074 -16.96334 -15.93346 -15.78975 -15.49756 -15.22797 -14.77116 -14.47731 -14.00967 -13.72888 -13.54136 -13.22730 -12.87797 -12.62387 -12.14710 -11.98792 -11.81516 -11.73548 -11.56810 -11.47009 -11.09582 -10.99298 -10.93549 -10.92569 -10.82449 -10.31941 -9.40696 -9.18553 -8.94676 -8.81498 -8.74477 -7.88774 -6.17704 -4.24685 0.93513 1.04014 1.90906 3.23409 3.29553 3.31860 3.35916 3.38548 4.04954 4.34326 4.56806 4.62894 4.85052 4.94641 5.03580 5.07738 5.18330 5.19812 5.25642 5.41684 5.61473 5.67667 5.80384 5.83845 5.92717 6.00728 6.09656 6.21312 6.24047 6.42194 6.59320 7.29754 7.43095 7.50775 7.65428 7.96202 8.62110 8.76797 9.09204 9.42135 10.92506 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.002940 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.489115 B = 9521.899575 C = 9744.744641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.063 4.063 5 C -0.058 4.058 6 C -0.111 4.111 7 C -0.107 4.107 8 C -0.120 4.120 9 C -0.032 4.032 10 Cl -0.076 7.076 11 C -0.108 4.108 12 C 0.502 3.498 13 O -0.557 6.557 14 N -0.711 5.711 15 C 0.249 3.751 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.390 0.610 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 7.372 21.373 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.111 0.889 4 C -0.101 4.101 5 C -0.059 4.059 6 C -0.129 4.129 7 C -0.125 4.125 8 C -0.139 4.139 9 C -0.059 4.059 10 Cl -0.047 7.047 11 C -0.127 4.127 12 C 0.286 3.714 13 O -0.437 6.437 14 N -0.359 5.359 15 C 0.128 3.872 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.223 0.777 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.884 6.638 21.318 22.856 hybrid contribution -0.430 0.981 -0.902 1.400 sum -5.314 7.619 20.416 22.430 Atomic orbital electron populations 1.21851 0.93234 1.02709 1.02522 1.21271 0.97539 1.00709 0.93276 0.88943 1.20445 1.02630 0.98077 0.88934 1.19961 0.93841 0.95532 0.96549 1.21251 0.96229 0.99951 0.95446 1.21106 0.99509 0.95565 0.96346 1.21016 0.93016 0.99177 1.00666 1.20925 0.93283 0.94470 0.97207 1.98371 1.66187 1.53446 1.86688 1.21027 1.00806 0.95784 0.95074 1.20382 0.81061 0.85023 0.84910 1.90654 1.39068 1.26948 1.86986 1.46467 1.51648 1.31147 1.06591 1.19103 0.95281 0.92865 0.79915 1.21229 1.33217 1.13125 0.90606 0.91923 1.24953 0.94854 0.94962 0.99247 1.69974 1.35705 1.22422 1.24196 0.86419 0.79182 0.79274 0.82063 1.20449 1.20998 1.19736 0.91706 0.91841 0.92039 0.89715 0.89834 0.85188 0.85170 0.85243 0.84832 0.77705 0.95576 0.95558 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.66 37.16 0.32 -1.35 16 2 C -0.11 -1.44 2.71 -91.77 -0.25 -1.69 16 3 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.06 -0.79 4.19 -27.88 -0.12 -0.91 16 5 C -0.06 -0.62 4.71 -104.63 -0.49 -1.11 16 6 C -0.11 -1.01 7.96 -39.58 -0.32 -1.33 16 7 C -0.11 -0.87 10.05 -39.59 -0.40 -1.27 16 8 C -0.12 -1.05 9.83 -39.55 -0.39 -1.44 16 9 C -0.03 -0.33 6.32 -39.49 -0.25 -0.58 16 10 Cl -0.08 -0.74 28.96 -51.86 -1.50 -2.24 16 11 C -0.11 -1.15 9.49 -39.55 -0.38 -1.53 16 12 C 0.50 9.69 7.15 -10.99 -0.08 9.61 16 13 O -0.56 -13.03 15.92 5.56 0.09 -12.94 16 14 N -0.71 -14.73 5.44 -61.48 -0.33 -15.07 16 15 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 16 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 20 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H 0.06 0.63 6.27 -51.93 -0.33 0.30 16 25 H 0.06 0.72 7.57 -51.93 -0.39 0.33 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.15 7.90 -51.93 -0.41 0.74 16 28 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 29 H 0.13 1.03 8.04 -52.49 -0.42 0.60 16 30 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.39 6.97 7.74 -40.82 -0.32 6.66 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -31.40 323.94 -8.72 -40.12 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.78 Total: 3.20 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.79 Total: -8.39 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.40 Total: -40.37 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.40 -8.72 -40.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427645104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.712 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds