Wall clock time and date at job start Tue Mar 31 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 S 1.81002 * 109.47296 * 2 1 4 4 C 1.76194 * 100.00441 * 179.97438 * 3 2 1 5 5 N 1.32889 * 120.17663 * 0.02562 * 4 3 2 6 6 C 1.32035 * 119.97915 * 179.97438 * 5 4 3 7 7 C 1.38815 * 120.35999 * 359.97438 * 6 5 4 8 8 N 1.31740 * 120.36516 * 0.02562 * 7 6 5 9 9 C 1.33085 * 120.00913 * 359.97438 * 8 7 6 10 10 C 1.47533 * 120.18002 * 180.02562 * 9 8 7 11 11 O 1.21615 * 120.00017 * 173.57874 * 10 9 8 12 12 N 1.34775 * 119.99474 * 353.57789 * 10 9 8 13 13 C 1.36805 * 119.99736 * 182.26022 * 12 10 9 14 14 H 1.07999 * 120.00287 * 18.04262 * 13 12 10 15 15 C 1.39089 * 120.00228 * 198.05254 * 13 12 10 16 16 N 1.31343 * 119.99646 * 20.47885 * 15 13 12 17 17 Si 1.86798 * 120.00061 * 200.48790 * 15 13 12 18 18 H 1.48496 * 109.47202 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47311 * 119.99224 * 17 15 13 20 20 H 1.48504 * 109.47055 * 239.99594 * 17 15 13 21 21 C 1.46497 * 120.00532 * 2.25387 * 12 10 9 22 22 C 1.53006 * 109.46992 * 82.13766 * 21 12 10 23 23 H 1.09001 * 109.46876 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47708 * 299.99853 * 1 2 3 25 25 H 1.08998 * 109.47051 * 60.00130 * 1 2 3 26 26 H 1.09004 * 109.47311 * 240.00246 * 2 1 3 27 27 H 1.09000 * 109.47456 * 120.00201 * 2 1 3 28 28 H 1.08007 * 119.81813 * 179.97438 * 6 5 4 29 29 H 1.07993 * 119.81423 * 179.72306 * 7 6 5 30 30 H 0.96995 * 119.99567 * 180.02562 * 16 15 13 31 31 H 1.09002 * 109.47818 * 202.13270 * 21 12 10 32 32 H 1.08996 * 109.47554 * 322.14281 * 21 12 10 33 33 H 1.08997 * 109.47644 * 180.02562 * 22 21 12 34 34 H 1.08998 * 109.47129 * 300.00190 * 22 21 12 35 35 H 1.09004 * 109.47349 * 59.99939 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8712 1.4166 0.0008 5 7 4.3412 0.1736 0.0006 6 6 5.6443 -0.0391 0.0007 7 6 6.5297 1.0300 0.0004 8 7 6.0790 2.2679 0.0005 9 6 4.7684 2.4991 0.0004 10 6 4.2596 3.8839 0.0000 11 8 3.0675 4.0937 -0.1178 12 7 5.1160 4.9165 0.1303 13 6 4.6400 6.1982 0.1763 14 1 3.5994 6.3801 0.4009 15 6 5.4962 7.2672 -0.0662 16 7 6.6203 7.0735 -0.7173 17 14 5.0475 8.9781 0.5344 18 1 3.7390 8.9295 1.2348 19 1 6.0927 9.4641 1.4707 20 1 4.9538 9.9010 -0.6252 21 6 6.5565 4.6663 0.2226 22 6 7.1321 4.4759 -1.1822 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 6.0233 -1.0505 0.0010 29 1 7.5938 0.8459 0.0050 30 1 7.2175 7.8189 -0.8861 31 1 7.0428 5.5157 0.7024 32 1 6.7320 3.7665 0.8121 33 1 8.2038 4.2893 -1.1136 34 1 6.6459 3.6266 -1.6620 35 1 6.9567 5.3757 -1.7718 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430405366.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:13 Heat of formation + Delta-G solvation = 44.079035 kcal Electronic energy + Delta-G solvation = -20153.153565 eV Core-core repulsion = 17086.203110 eV Total energy + Delta-G solvation = -3066.950455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59289 -38.22706 -35.25048 -34.00165 -32.51188 -31.85586 -31.01283 -29.35202 -25.92788 -24.41925 -24.21270 -22.92774 -22.09762 -19.96223 -17.54920 -17.42367 -16.82420 -16.18763 -15.38718 -14.98484 -14.93514 -14.40701 -14.32866 -14.12072 -13.55210 -13.30636 -12.92663 -12.52778 -12.13744 -11.98843 -11.53543 -11.47872 -11.36766 -11.18054 -11.02482 -10.78848 -10.74282 -10.41478 -10.22278 -10.03214 -9.64717 -9.38536 -9.05670 -8.72825 -8.11115 -7.77574 -7.07877 -6.50114 -3.92651 0.85576 1.39176 1.97707 2.75097 3.05404 3.17189 3.24403 3.57590 3.95757 4.34994 4.46765 4.67131 4.72608 5.03072 5.15075 5.16902 5.22517 5.41764 5.54563 5.57424 5.79100 5.95669 5.96597 6.21874 6.43364 6.60094 6.78979 6.86530 7.09112 7.27599 7.35004 7.48277 7.86595 7.93629 8.06016 8.39799 9.01091 9.24057 9.86648 10.42142 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021596 B = 0.006053 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.205604 B = 4625.009393 C = 5777.086212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.170 4.170 3 S 0.075 5.925 4 C 0.077 3.923 5 N -0.453 5.453 6 C 0.050 3.950 7 C 0.024 3.976 8 N -0.393 5.393 9 C 0.077 3.923 10 C 0.457 3.543 11 O -0.569 6.569 12 N -0.390 5.390 13 C -0.294 4.294 14 H 0.110 0.890 15 C 0.033 3.967 16 N -0.840 5.840 17 Si 0.928 3.072 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.279 1.279 21 C 0.121 3.879 22 C -0.136 4.136 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.164 0.836 29 H 0.165 0.835 30 H 0.272 0.728 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.025 0.975 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -10.682 1.632 10.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.318 4.318 3 S 0.315 5.685 4 C -0.176 4.176 5 N -0.172 5.172 6 C -0.115 4.115 7 C -0.141 4.141 8 N -0.111 5.111 9 C -0.070 4.070 10 C 0.246 3.754 11 O -0.456 6.456 12 N -0.104 5.104 13 C -0.423 4.423 14 H 0.128 0.872 15 C -0.174 4.174 16 N -0.477 5.477 17 Si 0.754 3.246 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.205 1.205 21 C -0.003 4.003 22 C -0.194 4.194 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.181 0.819 29 H 0.183 0.817 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.395 -9.402 1.515 9.625 hybrid contribution 1.214 -0.653 0.131 1.385 sum -0.180 -10.056 1.646 10.191 Atomic orbital electron populations 1.21451 0.93038 1.01955 1.02762 1.23831 0.99500 1.03005 1.05505 1.87431 0.90353 1.02518 1.88187 1.24289 1.01771 0.91571 0.99944 1.68802 1.15655 1.20086 1.12675 1.23664 0.89506 1.00782 0.97509 1.23784 1.01691 0.89205 0.99376 1.69301 1.13287 1.21190 1.07333 1.22378 0.88969 0.96147 0.99547 1.17114 0.86850 0.82577 0.88810 1.90536 1.14645 1.81746 1.58711 1.43843 1.06345 1.05171 1.55012 1.20008 0.97862 0.80421 1.43985 0.87238 1.25496 0.95851 1.00666 0.95351 1.70070 1.11583 1.32733 1.33268 0.85827 0.79172 0.80787 0.78812 1.18816 1.20310 1.20460 1.21745 0.80229 0.99965 0.98322 1.22031 0.97212 1.01747 0.98383 0.91846 0.92018 0.91978 0.90018 0.90075 0.81911 0.81746 0.91725 0.90608 0.90881 0.94963 0.95604 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.92 37.15 0.37 -1.21 16 2 C -0.17 -2.48 5.57 37.15 0.21 -2.27 16 3 S 0.08 1.44 19.00 -107.50 -2.04 -0.60 16 4 C 0.08 1.55 7.01 -16.21 -0.11 1.43 16 5 N -0.45 -7.88 9.32 -11.45 -0.11 -7.99 16 6 C 0.05 0.72 11.22 -17.25 -0.19 0.52 16 7 C 0.02 0.37 11.21 -17.38 -0.19 0.17 16 8 N -0.39 -7.65 4.40 -9.49 -0.04 -7.69 16 9 C 0.08 1.71 6.48 -82.65 -0.54 1.18 16 10 C 0.46 11.74 7.50 -12.47 -0.09 11.65 16 11 O -0.57 -15.60 13.47 5.26 0.07 -15.53 16 12 N -0.39 -10.12 2.63 -116.00 -0.31 -10.43 16 13 C -0.29 -7.90 9.31 -15.02 -0.14 -8.04 16 14 H 0.11 3.07 7.40 -52.49 -0.39 2.68 16 15 C 0.03 0.83 4.88 -17.44 -0.09 0.74 16 16 N -0.84 -20.83 8.49 55.50 0.47 -20.36 16 17 Si 0.93 19.48 29.60 -169.99 -5.03 14.45 16 18 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 C 0.12 2.79 4.86 -4.04 -0.02 2.77 16 22 C -0.14 -3.01 9.04 37.16 0.34 -2.67 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.19 8.13 -51.91 -0.42 0.76 16 27 H 0.08 1.17 8.13 -51.92 -0.42 0.74 16 28 H 0.16 1.60 8.06 -52.48 -0.42 1.17 16 29 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 31 H 0.08 1.84 6.31 -51.93 -0.33 1.51 16 32 H 0.07 1.60 5.36 -51.93 -0.28 1.32 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.57 6.58 -51.93 -0.34 0.23 16 35 H 0.09 2.29 5.81 -51.93 -0.30 1.99 16 LS Contribution 299.94 15.07 4.52 4.52 Total: -1.00 -29.45 299.94 -7.08 -36.53 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.15 Total: 2.82 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.46 Total: 4.28 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.02 Total: -46.47 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.07 Total: -15.53 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.04 Total: -0.60 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.45 -7.08 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430405366.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.611 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds