Wall clock time and date at job start Tue Mar 31 2020 05:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.47380 * 2 1 4 4 C 1.46491 * 119.99953 * 270.00503 * 3 2 1 5 5 C 1.50704 * 109.47217 * 269.99474 * 4 3 2 6 6 H 1.08003 * 119.99393 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00262 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99883 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99823 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47325 * 89.99779 * 9 7 5 11 11 H 1.48504 * 109.46880 * 209.99568 * 9 7 5 12 12 H 1.48497 * 109.47275 * 329.99176 * 9 7 5 13 13 C 1.34776 * 119.99537 * 89.99847 * 3 2 1 14 14 O 1.21563 * 119.99704 * 180.02562 * 13 3 2 15 15 C 1.47769 * 120.00165 * 0.02562 * 13 3 2 16 16 C 1.39619 * 120.15666 * 90.23020 * 15 13 3 17 17 C 1.50698 * 120.07209 * 0.02562 * 16 15 13 18 18 C 1.37903 * 119.86618 * 180.27857 * 16 15 13 19 19 C 1.38424 * 120.18009 * 359.74296 * 18 16 15 20 20 C 1.38274 * 120.31575 * 0.02562 * 19 18 16 21 21 C 1.38156 * 120.13119 * 359.95414 * 20 19 18 22 22 Cl 1.73599 * 120.09003 * 180.02562 * 21 20 19 23 23 H 1.08999 * 109.46860 * 59.99772 * 1 2 3 24 24 H 1.08998 * 109.47082 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46354 * 299.99881 * 1 2 3 26 26 H 1.09002 * 109.47242 * 240.00316 * 2 1 3 27 27 H 1.08994 * 109.47302 * 120.00324 * 2 1 3 28 28 H 1.09004 * 109.47582 * 29.99711 * 4 3 2 29 29 H 1.09001 * 109.47484 * 149.99640 * 4 3 2 30 30 H 0.97001 * 119.99815 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47580 * 270.26409 * 17 16 15 32 32 H 1.09011 * 109.46692 * 30.26111 * 17 16 15 33 33 H 1.08998 * 109.47552 * 150.25857 * 17 16 15 34 34 H 1.07993 * 119.91319 * 179.71704 * 18 16 15 35 35 H 1.08005 * 119.84227 * 180.02562 * 19 18 16 36 36 H 1.08001 * 119.92943 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1491 2.3897 -2.8780 8 7 5.3910 2.1826 -3.2579 9 14 3.0127 3.4352 -3.9292 10 1 3.1161 4.8554 -3.5082 11 1 3.4056 3.3120 -5.3560 12 1 1.6131 2.9691 -3.7593 13 6 2.2430 2.0165 1.1672 14 8 2.6479 3.1627 1.1673 15 6 1.9972 1.3197 2.4469 16 6 3.0202 0.5909 3.0565 17 6 4.3798 0.5129 2.4112 18 6 2.7826 -0.0619 4.2478 19 6 1.5347 0.0082 4.8428 20 6 0.5175 0.7318 4.2480 21 6 0.7415 1.3910 3.0548 22 17 -0.5361 2.2997 2.3093 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.5817 1.6878 -2.0284 29 1 2.0956 3.1411 -1.1384 30 1 5.7170 2.5731 -4.0838 31 1 4.4139 -0.3435 1.7378 32 1 4.5670 1.4265 1.8468 33 1 5.1420 0.3995 3.1821 34 1 3.5720 -0.6296 4.7177 35 1 1.3547 -0.5048 5.7760 36 1 -0.4538 0.7819 4.7175 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448770574.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:59 Heat of formation + Delta-G solvation = -18.873778 kcal Electronic energy + Delta-G solvation = -20379.097529 eV Core-core repulsion = 17275.080777 eV Total energy + Delta-G solvation = -3104.016751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.17892 -38.14633 -36.52297 -35.36111 -32.87666 -32.61576 -31.03980 -30.26195 -27.84004 -26.93223 -23.94078 -22.96331 -22.09394 -21.41967 -18.83140 -17.08708 -16.87024 -16.15668 -15.96957 -15.71610 -14.77746 -14.27333 -13.95504 -13.74132 -13.44722 -13.41685 -13.02870 -12.72210 -12.51967 -12.40124 -12.12049 -11.87682 -11.57191 -11.49399 -11.43308 -11.26141 -10.90374 -10.79281 -10.53674 -10.46058 -10.15459 -9.55886 -9.21766 -8.76447 -8.70653 -8.58317 -7.73920 -6.08949 -4.07456 1.00240 1.12789 2.09258 3.21060 3.29839 3.35654 3.38311 3.44104 3.80032 4.40150 4.67526 4.71675 4.84730 5.13547 5.21831 5.24733 5.36011 5.38371 5.63012 5.66915 5.73289 5.79507 5.85466 6.04348 6.08860 6.19844 6.20385 6.29590 6.45257 6.50182 6.67693 6.74170 6.95343 7.32657 7.60628 8.19688 8.45672 8.86745 8.95025 9.51658 11.04241 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.006283 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.199984 B = 4455.496919 C = 5056.756032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.108 3.892 3 N -0.579 5.579 4 C 0.216 3.784 5 C -0.527 4.527 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.557 3.443 14 O -0.526 6.526 15 C -0.099 4.099 16 C -0.039 4.039 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.099 4.099 20 C -0.121 4.121 21 C -0.008 4.008 22 Cl -0.056 7.056 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.037 0.963 30 H 0.264 0.736 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 -7.667 14.436 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.016 4.016 3 N -0.309 5.309 4 C 0.096 3.904 5 C -0.566 4.566 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.343 3.657 14 O -0.403 6.403 15 C -0.103 4.103 16 C -0.040 4.040 17 C -0.182 4.182 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.140 4.140 21 C -0.035 4.035 22 Cl -0.026 7.026 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.946 -6.923 14.164 18.641 hybrid contribution -0.631 0.560 -0.696 1.093 sum -10.577 -6.363 13.468 18.269 Atomic orbital electron populations 1.22429 0.96629 1.01699 1.03147 1.21429 0.93721 0.83589 1.02856 1.47871 1.63086 1.13411 1.06525 1.19697 0.97476 0.93429 0.79834 1.21303 0.95205 1.32928 1.07151 0.90609 1.24825 0.94965 0.95760 0.97309 1.69887 1.15099 1.44984 1.23570 0.86888 0.81577 0.81699 0.79799 1.19877 1.21063 1.19035 1.17890 0.78555 0.86177 0.83125 1.90791 1.45493 1.17248 1.86771 1.20006 0.92775 1.00051 0.97492 1.19994 0.95400 0.94161 0.94422 1.20946 0.91710 1.04587 1.00924 1.21080 0.97534 0.99973 0.95159 1.21147 0.92582 0.98228 0.99727 1.20927 1.00475 0.98443 0.94172 1.20882 0.89104 0.98118 0.95434 1.98379 1.49712 1.72816 1.81734 0.92296 0.92185 0.91912 0.89653 0.91639 0.95034 0.94520 0.92571 0.90100 0.89940 0.90922 0.84986 0.84974 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.11 1.81 5.95 -4.04 -0.02 1.79 16 3 N -0.58 -12.22 2.46 -176.20 -0.43 -12.66 16 4 C 0.22 5.33 4.23 -5.20 -0.02 5.31 16 5 C -0.53 -14.98 9.94 -34.44 -0.34 -15.32 16 6 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 9 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.56 11.93 4.64 -12.36 -0.06 11.87 16 14 O -0.53 -13.53 16.68 5.31 0.09 -13.44 16 15 C -0.10 -1.70 3.91 -104.94 -0.41 -2.11 16 16 C -0.04 -0.57 5.49 -104.23 -0.57 -1.14 16 17 C -0.13 -1.88 9.61 36.00 0.35 -1.54 16 18 C -0.12 -1.33 9.69 -39.64 -0.38 -1.71 16 19 C -0.10 -0.97 10.04 -39.50 -0.40 -1.37 16 20 C -0.12 -1.38 9.82 -39.60 -0.39 -1.77 16 21 C -0.01 -0.12 5.68 -39.07 -0.22 -0.34 16 22 Cl -0.06 -0.84 25.57 -51.86 -1.33 -2.17 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.91 4.46 -51.93 -0.23 0.67 16 26 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 27 H 0.07 1.00 6.55 -51.93 -0.34 0.66 16 28 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 29 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.57 7.09 -51.92 -0.37 1.20 16 33 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -33.32 314.80 -7.64 -40.96 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.63 Total: -1.26 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.19 Total: -6.52 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.34 Total: -39.30 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.33 Total: -2.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.32 -7.64 -40.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448770574.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.091 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds