Wall clock time and date at job start Tue Mar 31 2020 05:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46917 * 170.20265 * 3 2 1 5 5 C 1.36598 * 120.00152 * 264.73429 * 4 3 2 6 6 H 1.08000 * 120.00119 * 139.33230 * 5 4 3 7 7 C 1.39235 * 119.99873 * 319.33175 * 5 4 3 8 8 N 1.31243 * 119.99718 * 158.29653 * 7 5 4 9 9 Si 1.86793 * 120.00247 * 338.29731 * 7 5 4 10 10 H 1.48497 * 109.47160 * 90.87761 * 9 7 5 11 11 H 1.48502 * 109.47245 * 210.87731 * 9 7 5 12 12 H 1.48498 * 109.46986 * 330.87721 * 9 7 5 13 13 C 1.34780 * 119.99795 * 84.73131 * 4 3 2 14 14 O 1.21606 * 119.99981 * 5.39974 * 13 4 3 15 15 C 1.47745 * 119.99860 * 185.39509 * 13 4 3 16 16 C 1.39086 * 121.18260 * 315.42063 * 15 13 4 17 17 C 1.39218 * 119.65949 * 180.02562 * 16 15 13 18 18 N 1.31184 * 121.92253 * 359.42726 * 17 16 15 19 19 C 1.33301 * 121.64137 * 0.88264 * 18 17 16 20 20 C 1.40828 * 121.91375 * 179.11088 * 19 18 17 21 21 C 1.36177 * 118.76913 * 180.02562 * 20 19 18 22 22 N 1.32532 * 121.94823 * 359.97438 * 21 20 19 23 23 C 1.31369 * 122.59383 * 0.02562 * 22 21 20 24 24 C 1.40009 * 119.88546 * 0.27352 * 23 22 21 25 25 H 4.40640 * 5.51380 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47503 * 50.20522 * 3 2 1 27 27 H 1.09001 * 109.47448 * 290.20419 * 3 2 1 28 28 H 0.97001 * 119.99901 * 180.02562 * 8 7 5 29 29 H 1.08003 * 120.16775 * 0.02562 * 16 15 13 30 30 H 1.07998 * 119.03986 * 179.97438 * 17 16 15 31 31 H 1.07997 * 120.61494 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.02882 * 180.02562 * 21 20 19 33 33 H 1.08005 * 120.05993 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3620 -0.2350 5 6 3.4635 1.7606 -1.4993 6 1 3.1954 2.7494 -1.8409 7 6 4.1454 0.8921 -2.3474 8 7 4.0962 1.0704 -3.6467 9 14 5.1303 -0.5267 -1.6360 10 1 4.2650 -1.7294 -1.5370 11 1 6.2860 -0.8200 -2.5212 12 1 5.6229 -0.1587 -0.2843 13 6 3.2569 2.2211 0.7961 14 8 3.0578 1.8387 1.9332 15 6 3.6338 3.6274 0.5450 16 6 4.6598 3.9516 -0.3364 17 6 4.9891 5.2874 -0.5489 18 7 4.3506 6.2633 0.0519 19 6 3.3614 6.0258 0.9133 20 6 2.6845 7.0683 1.5754 21 6 1.6837 6.7526 2.4432 22 7 1.3308 5.4972 2.6801 23 6 1.9175 4.4755 2.0990 24 6 2.9633 4.6938 1.1940 25 1 -1.0502 -0.0005 -0.0001 26 1 3.0097 -0.6569 -0.7896 27 1 3.0096 -0.3541 0.9644 28 1 4.5709 0.4651 -4.2376 29 1 5.1982 3.1709 -0.8532 30 1 5.7877 5.5278 -1.2351 31 1 2.9547 8.0989 1.3989 32 1 1.1614 7.5487 2.9530 33 1 1.5965 3.4687 2.3220 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490973601.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:05 Heat of formation + Delta-G solvation = 107.257883 kcal Electronic energy + Delta-G solvation = -21190.192512 eV Core-core repulsion = 17990.537746 eV Total energy + Delta-G solvation = -3199.654766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96788 -39.07439 -37.59367 -35.55923 -33.37832 -32.70757 -31.87247 -31.22355 -30.15038 -27.22183 -25.58592 -24.47014 -23.77676 -22.69057 -19.78481 -18.70315 -18.37059 -17.52003 -17.05211 -16.23207 -15.95053 -15.47202 -14.80452 -14.64333 -14.30773 -14.20044 -14.01554 -13.74657 -13.24860 -12.95887 -12.79239 -12.51680 -12.40419 -12.15908 -11.70379 -11.20576 -11.04671 -10.44908 -10.15227 -10.02535 -9.78326 -9.64716 -9.50170 -9.26530 -8.99759 -8.81699 -8.24477 -8.11941 -6.77774 -4.40441 0.38229 1.03162 1.97077 2.83242 3.00570 3.03225 3.08388 3.23085 3.38674 3.53816 3.85788 4.12523 4.38345 4.42117 4.59346 4.65857 4.87978 4.96478 5.06829 5.11619 5.25553 5.49122 5.72858 5.80355 5.85668 5.93517 6.04195 6.10833 6.21528 6.40052 6.51967 6.70126 6.90991 6.98342 7.70237 7.93085 8.04767 8.12724 8.15360 8.56094 8.92057 9.24354 10.30463 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.006984 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.691117 B = 4008.472212 C = 4962.819351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.170 4.170 3 C 0.198 3.802 4 N -0.438 5.438 5 C -0.363 4.363 6 H 0.109 0.891 7 C 0.075 3.925 8 N -0.838 5.838 9 Si 0.863 3.137 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.254 1.254 13 C 0.517 3.483 14 O -0.576 6.576 15 C -0.009 4.009 16 C -0.121 4.121 17 C 0.146 3.854 18 N -0.484 5.484 19 C 0.150 3.850 20 C -0.151 4.151 21 C 0.082 3.918 22 N -0.498 5.498 23 C 0.174 3.826 24 C -0.138 4.138 25 H 0.214 0.786 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.281 0.719 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.141 0.859 32 H 0.154 0.846 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 4.101 4.342 5.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.172 4.172 3 C 0.076 3.924 4 N -0.157 5.157 5 C -0.489 4.489 6 H 0.126 0.874 7 C -0.136 4.136 8 N -0.470 5.470 9 Si 0.688 3.312 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.178 1.178 13 C 0.306 3.694 14 O -0.461 6.461 15 C -0.022 4.022 16 C -0.142 4.142 17 C -0.025 4.025 18 N -0.193 5.193 19 C 0.023 3.977 20 C -0.171 4.171 21 C -0.062 4.062 22 N -0.206 5.206 23 C 0.002 3.998 24 C -0.143 4.143 25 H 0.230 0.770 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.183 0.817 30 H 0.182 0.818 31 H 0.159 0.841 32 H 0.172 0.828 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.361 4.757 5.177 7.040 hybrid contribution 0.762 -1.458 -0.650 1.769 sum 0.401 3.299 4.527 5.616 Atomic orbital electron populations 1.24708 0.95660 1.00327 1.02925 1.23545 0.94722 1.00189 0.98703 1.18811 0.84199 0.86617 1.02753 1.43445 1.54822 1.09791 1.07596 1.19130 1.38365 1.04224 0.87221 0.87403 1.25380 0.95854 0.97667 0.94680 1.69686 1.37381 1.37524 1.02415 0.87149 0.80786 0.82341 0.80905 1.19362 1.20450 1.17764 1.18026 0.81264 0.85412 0.84668 1.90693 1.55400 1.78411 1.21589 1.20250 0.94683 0.93384 0.93892 1.22840 0.97190 0.98375 0.95767 1.23131 0.96221 0.88381 0.94793 1.67836 1.07180 1.36371 1.07897 1.18808 0.93524 0.91084 0.94261 1.21611 0.97659 0.99335 0.98530 1.22211 0.94651 0.93777 0.95571 1.67608 1.28723 0.99620 1.24691 1.23490 0.88921 0.98856 0.88501 1.19638 0.99871 0.93966 1.00860 0.76958 0.88367 0.88558 0.90831 0.81715 0.81759 0.84095 0.82833 0.80961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.89 19.25 29.55 0.57 -3.32 16 2 C -0.17 -3.48 13.62 -37.13 -0.51 -3.99 16 3 C 0.20 4.15 4.50 -6.83 -0.03 4.12 16 4 N -0.44 -9.83 2.08 -119.06 -0.25 -10.08 16 5 C -0.36 -8.52 7.05 -15.06 -0.11 -8.63 16 6 H 0.11 2.72 6.81 -52.49 -0.36 2.37 16 7 C 0.08 1.76 5.26 -17.43 -0.09 1.67 16 8 N -0.84 -20.76 13.95 55.51 0.77 -19.99 16 9 Si 0.86 17.75 25.34 -169.99 -4.31 13.44 16 10 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 11 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 12 H -0.25 -5.24 7.11 56.52 0.40 -4.84 16 13 C 0.52 11.46 6.81 -12.37 -0.08 11.37 16 14 O -0.58 -13.47 14.86 5.27 0.08 -13.39 16 15 C -0.01 -0.18 5.25 -104.37 -0.55 -0.73 16 16 C -0.12 -2.20 7.97 -38.90 -0.31 -2.51 16 17 C 0.15 2.35 11.14 -17.46 -0.19 2.15 16 18 N -0.48 -8.37 10.33 -10.97 -0.11 -8.48 16 19 C 0.15 2.70 6.63 -84.88 -0.56 2.14 16 20 C -0.15 -2.27 10.08 -39.34 -0.40 -2.67 16 21 C 0.08 1.21 11.06 -17.99 -0.20 1.01 16 22 N -0.50 -8.73 10.31 -13.25 -0.14 -8.87 16 23 C 0.17 3.32 10.47 -17.09 -0.18 3.14 16 24 C -0.14 -2.69 5.76 -106.54 -0.61 -3.31 16 25 H 0.21 2.83 7.80 -54.08 -0.42 2.41 16 26 H 0.10 2.04 3.81 -51.93 -0.20 1.84 16 27 H 0.10 1.91 7.51 -51.93 -0.39 1.52 16 28 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16 29 H 0.17 3.01 6.59 -52.48 -0.35 2.66 16 30 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.17 3.42 6.24 -52.48 -0.33 3.09 16 LS Contribution 293.69 15.07 4.43 4.43 Total: -1.00 -28.14 293.69 -5.26 -33.40 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -2.48 Total: 9.10 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -3.25 Total: 0.44 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.28 Total: -47.42 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -4.31 Total: 13.44 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.14 -5.26 -33.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973601.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.657 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds