Wall clock time and date at job start Tue Mar 31 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99798 * 2 1 4 4 C 1.50701 * 109.47324 * 270.00661 * 3 2 1 5 5 H 1.08001 * 119.99742 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00143 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99815 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00091 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46961 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47402 * 119.99460 * 8 6 4 11 11 H 1.48501 * 109.47535 * 239.99571 * 8 6 4 12 12 C 1.34775 * 119.99999 * 180.02562 * 2 1 3 13 13 O 1.21725 * 119.99438 * 179.97438 * 12 2 1 14 14 C 1.46237 * 120.00244 * 359.97438 * 12 2 1 15 15 C 1.34983 * 120.00347 * 174.00125 * 14 12 2 16 16 C 1.46960 * 119.99743 * 352.92116 * 15 14 12 17 17 C 1.40135 * 120.21030 * 116.09078 * 16 15 14 18 18 F 1.35109 * 120.10507 * 0.04859 * 17 16 15 19 19 C 1.38146 * 119.78695 * 180.02562 * 17 16 15 20 20 C 1.38349 * 120.21140 * 0.25040 * 19 17 16 21 21 C 1.38349 * 120.42673 * 359.49384 * 20 19 17 22 22 C 1.38152 * 120.21404 * 0.50896 * 21 20 19 23 23 F 1.35100 * 120.10835 * 179.77063 * 22 21 20 24 24 H 1.09003 * 109.46844 * 269.99722 * 1 2 3 25 25 H 1.08994 * 109.47269 * 29.99651 * 1 2 3 26 26 H 1.08997 * 109.47112 * 150.00269 * 1 2 3 27 27 H 1.09006 * 109.47034 * 29.99982 * 3 2 1 28 28 H 1.08997 * 109.47265 * 150.00240 * 3 2 1 29 29 H 0.97003 * 119.99617 * 180.02562 * 7 6 4 30 30 H 1.08009 * 119.99845 * 353.99834 * 14 12 2 31 31 H 1.07994 * 120.00432 * 172.92789 * 15 14 12 32 32 H 1.08004 * 119.89443 * 179.97438 * 19 17 16 33 33 H 1.08005 * 119.78604 * 179.74711 * 20 19 17 34 34 H 1.08004 * 119.89352 * 180.25793 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0959 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.5540 3.6177 -0.6731 8 14 3.4385 3.4167 -3.4338 9 1 2.8613 2.4161 -4.3673 10 1 2.8012 4.7375 -3.6675 11 1 4.9011 3.5245 -3.6670 12 6 2.1389 -1.1672 -0.0005 13 8 3.3561 -1.1671 -0.0010 14 6 1.4078 -2.4337 -0.0005 15 6 2.0771 -3.5994 -0.1232 16 6 3.5180 -3.5925 -0.4123 17 6 4.4266 -4.1112 0.5200 18 9 3.9812 -4.6212 1.6891 19 6 5.7793 -4.0998 0.2395 20 6 6.2381 -3.5738 -0.9550 21 6 5.3484 -3.0643 -1.8839 22 6 3.9920 -3.0667 -1.6216 23 9 3.1255 -2.5643 -2.5282 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1385 0.5138 29 1 4.0308 4.4436 -0.8504 30 1 0.3322 -2.4363 0.0977 31 1 1.5538 -4.5372 -0.0091 32 1 6.4812 -4.4988 0.9569 33 1 7.2974 -3.5647 -1.1655 34 1 5.7158 -2.6595 -2.8154 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491465833.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:28 Heat of formation + Delta-G solvation = -68.944689 kcal Electronic energy + Delta-G solvation = -22073.270084 eV Core-core repulsion = 18415.285414 eV Total energy + Delta-G solvation = -3657.984669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.79299 -48.59147 -39.24914 -38.17198 -34.94490 -33.66130 -32.56913 -30.08063 -29.68815 -27.77392 -25.85651 -24.23418 -22.70795 -22.52523 -20.72997 -18.28900 -17.73009 -17.09971 -16.75286 -16.47902 -15.73005 -15.57879 -15.32555 -14.98096 -14.94332 -14.34084 -14.15866 -14.11706 -13.74356 -13.07267 -12.53157 -12.40894 -12.39049 -12.13319 -11.86374 -11.77928 -11.63148 -11.21641 -11.10352 -10.85950 -10.57442 -10.15417 -9.67373 -9.54811 -9.10764 -8.50925 -8.42512 -8.09346 -7.59550 -6.02828 -4.07093 0.96874 1.27384 1.71667 3.30028 3.37375 3.42472 3.57171 3.93584 4.07353 4.14334 4.46492 4.64757 4.67988 4.91828 5.00202 5.17544 5.31495 5.32989 5.43619 5.70331 5.90246 5.94350 6.00379 6.06094 6.20974 6.21546 6.32873 6.36189 6.38146 7.00563 7.09959 7.45969 7.56025 7.94041 8.25246 8.42918 8.92116 9.10304 9.57773 11.05261 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.018224 B = 0.006117 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.027031 B = 4576.648741 C = 5261.016200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.595 5.595 3 C 0.245 3.755 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.526 3.474 13 O -0.532 6.532 14 C -0.170 4.170 15 C -0.064 4.064 16 C -0.103 4.103 17 C 0.133 3.867 18 F -0.135 7.135 19 C -0.169 4.169 20 C -0.064 4.064 21 C -0.161 4.161 22 C 0.173 3.827 23 F -0.126 7.126 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 -16.092 0.673 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.326 5.326 3 C 0.126 3.874 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.314 3.686 13 O -0.411 6.411 14 C -0.190 4.190 15 C -0.083 4.083 16 C -0.105 4.105 17 C 0.114 3.886 18 F -0.113 7.113 19 C -0.188 4.188 20 C -0.082 4.082 21 C -0.180 4.180 22 C 0.153 3.847 23 F -0.104 7.104 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.710 -15.857 0.729 15.890 hybrid contribution -0.265 0.613 -0.851 1.082 sum -0.975 -15.244 -0.122 15.276 Atomic orbital electron populations 1.21683 0.81483 1.02621 1.00428 1.48088 1.06176 1.07873 1.70473 1.19295 0.92547 0.77980 0.97560 1.21467 1.36227 1.06129 0.92261 0.92390 1.24930 0.95417 0.96410 0.97373 1.69949 1.38561 1.14346 1.30615 0.86465 0.78068 0.78323 0.84734 1.19750 1.20950 1.20888 1.18193 0.87701 0.84165 0.78522 1.90814 1.13236 1.86975 1.50052 1.23514 1.00468 0.93221 1.01828 1.21947 0.91576 0.98034 0.96782 1.18701 0.94090 1.03355 0.94320 1.17316 0.91786 0.97821 0.81710 1.91477 1.90142 1.84515 1.45189 1.20932 0.93373 1.05091 0.99409 1.20754 0.99693 0.95659 0.92102 1.21024 0.91113 1.03717 1.02180 1.17283 0.87188 0.93825 0.86389 1.91530 1.69346 1.84453 1.65071 0.93686 0.90686 0.92331 0.95039 0.93798 0.92821 0.84762 0.84412 0.84567 0.84466 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.11 59.85 0.61 1.95 16 2 N -0.59 -13.15 2.86 -184.68 -0.53 -13.68 16 3 C 0.25 6.58 5.16 -5.19 -0.03 6.56 16 4 C -0.52 -15.10 9.39 -34.44 -0.32 -15.42 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.16 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.53 11.44 7.01 -13.05 -0.09 11.34 16 13 O -0.53 -13.34 12.52 5.17 0.06 -13.28 16 14 C -0.17 -2.78 8.93 -37.53 -0.34 -3.11 16 15 C -0.06 -0.96 9.09 -37.21 -0.34 -1.30 16 16 C -0.10 -1.74 3.75 -104.94 -0.39 -2.13 16 17 C 0.13 2.08 7.29 -38.90 -0.28 1.80 16 18 F -0.13 -2.05 16.84 2.25 0.04 -2.02 16 19 C -0.17 -2.28 10.01 -39.57 -0.40 -2.68 16 20 C -0.06 -0.83 10.03 -39.50 -0.40 -1.23 16 21 C -0.16 -2.49 10.01 -39.57 -0.40 -2.88 16 22 C 0.17 3.08 5.31 -38.90 -0.21 2.88 16 23 F -0.13 -2.45 16.22 2.25 0.04 -2.42 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 26 H 0.06 0.79 6.18 -51.93 -0.32 0.47 16 27 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 28 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.13 1.69 6.31 -52.48 -0.33 1.36 16 31 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -34.28 306.67 -6.27 -40.55 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -3.53 Total: -2.17 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.68 Total: -2.57 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.21 Total: -39.89 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.06 Total: -13.28 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.07 Total: -4.43 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.28 -6.27 -40.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491465833.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.396 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds