Wall clock time and date at job start Tue Mar 31 2020 05:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38349 * 127.15124 * 2 1 4 4 C 1.39776 * 126.56539 * 359.97438 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78826 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.78076 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87149 * 179.73605 * 3 2 1 13 13 N 1.28516 * 109.74574 * 0.25995 * 12 3 2 14 14 C 1.32389 * 110.20242 * 359.97438 * 13 12 3 15 15 S 1.76204 * 126.25914 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99786 * 0.03042 * 15 14 13 17 17 C 1.50701 * 109.47130 * 180.02562 * 16 15 14 18 18 O 1.20766 * 119.99997 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00161 * 179.97438 * 17 16 15 20 20 C 1.53001 * 109.47025 * 179.97438 * 19 17 16 21 21 C 1.53003 * 117.49934 * 243.62039 * 20 19 17 22 22 C 1.52996 * 60.00334 * 252.51478 * 21 20 19 23 23 H 1.09000 * 109.46642 * 90.00171 * 1 2 3 24 24 H 1.08991 * 109.47275 * 210.00238 * 1 2 3 25 25 H 1.08996 * 109.46979 * 330.00798 * 1 2 3 26 26 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 27 27 H 1.09008 * 109.47151 * 299.99549 * 16 15 14 28 28 H 1.08994 * 109.47580 * 59.99790 * 16 15 14 29 29 H 1.08999 * 109.47376 * 299.99679 * 19 17 16 30 30 H 1.09003 * 109.47236 * 59.99828 * 19 17 16 31 31 H 1.08997 * 115.55528 * 29.33237 * 20 19 17 32 32 H 1.09000 * 117.49871 * 0.02562 * 21 20 19 33 33 H 1.08998 * 117.50066 * 145.02066 * 21 20 19 34 34 H 1.09008 * 117.49941 * 252.51585 * 22 21 20 35 35 H 1.08990 * 117.50294 * 107.49119 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8640 2.7018 0.0934 6 6 2.8709 3.4551 -0.1226 7 7 2.5140 4.7110 -0.0421 8 14 4.6635 3.0094 -0.4007 9 1 5.4732 4.2506 -0.4956 10 1 5.1506 2.1857 0.7349 11 1 4.7916 2.2376 -1.6629 12 7 3.5490 0.6414 0.0059 13 7 3.5371 -0.6437 0.0039 14 6 2.2904 -1.0893 -0.0027 15 16 1.7874 -2.7780 -0.0083 16 6 3.4059 -3.5881 -0.0013 17 6 3.2192 -5.0835 -0.0056 18 8 2.1066 -5.5531 -0.0121 19 6 4.4208 -5.9929 -0.0017 20 6 3.9570 -7.4509 -0.0065 21 6 4.3118 -8.3092 1.2094 22 6 5.0318 -8.5338 -0.1217 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.5753 4.9451 0.0271 27 1 3.9654 -3.2897 -0.8880 28 1 3.9563 -3.2928 0.8919 29 1 5.0250 -5.8005 -0.8883 30 1 5.0163 -5.8044 0.8917 31 1 2.9998 -7.6382 -0.4930 32 1 4.8753 -7.8350 2.0130 33 1 3.5878 -9.0611 1.5232 34 1 4.7815 -9.4335 -0.6838 35 1 6.0692 -8.2075 -0.1941 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527011349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:07 Heat of formation + Delta-G solvation = 39.783344 kcal Electronic energy + Delta-G solvation = -18743.028306 eV Core-core repulsion = 15675.891576 eV Total energy + Delta-G solvation = -3067.136730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96782 -39.78650 -37.26358 -33.97196 -33.61181 -31.41739 -30.04460 -28.58056 -26.75707 -25.33962 -22.66367 -21.61427 -21.34901 -20.31204 -19.64075 -18.23300 -16.89389 -16.71979 -15.79560 -15.41251 -15.28165 -15.02466 -14.60348 -14.01089 -13.78713 -13.57748 -13.27522 -13.09629 -12.65177 -12.56651 -12.34859 -11.96666 -11.80011 -11.70316 -11.17959 -10.90114 -10.69811 -10.41510 -10.31380 -9.92796 -9.80958 -9.61031 -9.43423 -9.13368 -8.71727 -8.43449 -7.45933 -7.12943 -4.87697 1.66555 1.79483 2.52097 2.86866 3.46382 3.54024 3.56488 3.79437 3.84637 4.01688 4.10931 4.37913 4.41057 4.61799 4.69725 4.90482 5.07387 5.12001 5.23461 5.33631 5.35791 5.37179 5.44352 5.55685 5.62582 5.71500 5.82492 5.89948 6.00823 6.33097 6.60868 7.08649 7.29236 7.36686 7.49083 8.01407 8.31432 8.52144 9.92700 10.06317 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033750 B = 0.003641 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.436380 B = 7689.279013 C = 8415.376637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.511 5.511 3 C 0.345 3.655 4 C -0.491 4.491 5 H 0.083 0.917 6 C 0.064 3.936 7 N -0.807 5.807 8 Si 1.113 2.887 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.281 1.281 12 N -0.416 5.416 13 N -0.273 5.273 14 C 0.056 3.944 15 S 0.004 5.996 16 C -0.163 4.163 17 C 0.377 3.623 18 O -0.438 6.438 19 C -0.132 4.132 20 C -0.149 4.149 21 C -0.179 4.179 22 C -0.179 4.179 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.284 0.716 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.393 -18.880 0.175 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.212 5.212 3 C 0.102 3.898 4 C -0.532 4.532 5 H 0.101 0.899 6 C -0.159 4.159 7 N -0.430 5.430 8 Si 0.942 3.058 9 H -0.241 1.241 10 H -0.186 1.186 11 H -0.207 1.207 12 N -0.266 5.266 13 N -0.116 5.116 14 C -0.318 4.318 15 S 0.231 5.769 16 C -0.312 4.312 17 C 0.250 3.750 18 O -0.310 6.310 19 C -0.171 4.171 20 C -0.168 4.168 21 C -0.216 4.216 22 C -0.216 4.216 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.628 -18.934 0.056 19.115 hybrid contribution -2.009 0.242 0.197 2.033 sum 0.620 -18.692 0.253 18.704 Atomic orbital electron populations 1.21557 0.77675 1.03018 1.02107 1.45817 1.06458 1.04828 1.64117 1.21721 0.85096 0.89087 0.93874 1.19405 0.97457 0.87223 1.49139 0.89865 1.27367 1.08508 0.91264 0.88743 1.70672 1.21593 1.18460 1.32319 0.82692 0.70574 0.72151 0.80405 1.24114 1.18608 1.20711 1.73966 1.15943 1.00934 1.35762 1.74232 1.15430 1.05698 1.16274 1.25682 0.90984 0.93878 1.21282 1.85132 1.07168 0.89234 1.95394 1.24065 1.01743 0.96155 1.09282 1.23992 0.90590 0.89700 0.70708 1.90411 1.27509 1.78087 1.34987 1.21615 0.97495 0.92755 1.05263 1.22141 1.00490 0.90642 1.03485 1.23048 1.03571 1.03281 0.91702 1.22992 0.97520 1.00370 1.00754 0.92069 0.91093 0.90215 0.90521 0.85658 0.85719 0.87503 0.87851 0.86600 0.88682 0.88781 0.88727 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 10.89 59.85 0.65 2.46 16 2 N -0.51 -11.89 3.26 -123.18 -0.40 -12.29 16 3 C 0.35 9.20 7.27 -154.81 -1.13 8.07 16 4 C -0.49 -13.17 9.50 -38.31 -0.36 -13.53 16 5 H 0.08 2.16 7.47 -52.49 -0.39 1.77 16 6 C 0.06 1.72 5.52 -17.29 -0.10 1.63 16 7 N -0.81 -21.59 13.65 55.56 0.76 -20.83 16 8 Si 1.11 27.82 25.90 -169.99 -4.40 23.42 16 9 H -0.31 -7.47 7.11 56.52 0.40 -7.06 16 10 H -0.26 -6.69 6.76 56.52 0.38 -6.31 16 11 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 12 N -0.42 -11.45 7.51 31.26 0.23 -11.21 16 13 N -0.27 -6.84 11.62 30.89 0.36 -6.48 16 14 C 0.06 1.25 8.09 -87.28 -0.71 0.55 16 15 S 0.00 0.07 20.93 -107.50 -2.25 -2.18 16 16 C -0.16 -2.25 5.64 36.01 0.20 -2.04 16 17 C 0.38 4.48 7.18 -29.04 -0.21 4.27 16 18 O -0.44 -6.47 15.07 5.99 0.09 -6.38 16 19 C -0.13 -1.11 5.92 -27.89 -0.17 -1.27 16 20 C -0.15 -1.31 5.41 -90.61 -0.49 -1.81 16 21 C -0.18 -1.39 10.18 -26.73 -0.27 -1.67 16 22 C -0.18 -1.27 10.25 -26.73 -0.27 -1.55 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.07 1.11 7.85 -51.93 -0.41 0.71 16 25 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 26 H 0.28 7.21 8.72 -40.82 -0.36 6.85 16 27 H 0.13 1.67 8.14 -51.91 -0.42 1.25 16 28 H 0.12 1.67 8.14 -51.92 -0.42 1.24 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.71 7.87 -51.93 -0.41 0.30 16 31 H 0.12 1.19 7.31 -51.93 -0.38 0.81 16 32 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -32.29 316.47 -8.21 -40.50 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -4.52 Total: -4.43 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.85 Total: -4.89 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.95 Total: -50.80 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: 0.09 Total: -6.38 kcal Atomic # 14 Polarization: 27.82 SS G_CDS: -4.40 Total: 23.42 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.25 Total: -2.18 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.29 -8.21 -40.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527011349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.281 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds