Wall clock time and date at job start Tue Mar 31 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46866 * 89.99701 * 3 2 1 5 5 H 1.07991 * 120.00399 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99530 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00078 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99875 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46842 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47069 * 119.99937 * 8 6 4 11 11 H 1.48503 * 109.46811 * 240.00006 * 8 6 4 12 12 C 1.34779 * 119.99874 * 179.97438 * 2 1 3 13 13 O 1.21732 * 120.00033 * 186.89302 * 12 2 1 14 14 C 1.46460 * 120.00392 * 6.88959 * 12 2 1 15 15 C 1.33491 * 122.40371 * 189.96967 * 14 12 2 16 16 S 1.75847 * 109.86806 * 179.90560 * 15 14 12 17 17 C 1.75901 * 91.01371 * 0.30285 * 16 15 14 18 18 N 1.30805 * 125.32969 * 179.85188 * 17 16 15 19 19 C 1.46492 * 120.00018 * 359.97438 * 18 17 16 20 20 C 1.53003 * 117.49799 * 188.62109 * 19 18 17 21 21 C 1.53005 * 60.00076 * 252.50996 * 20 19 18 22 22 N 1.35546 * 109.34413 * 359.82776 * 17 16 15 23 23 H 0.96997 * 122.71662 * 179.97438 * 22 17 16 24 24 H 1.08997 * 109.47313 * 95.69432 * 1 2 3 25 25 H 1.09004 * 109.46783 * 215.69465 * 1 2 3 26 26 H 1.08992 * 109.47255 * 335.69246 * 1 2 3 27 27 H 1.08997 * 109.47021 * 210.00266 * 3 2 1 28 28 H 1.09000 * 109.46855 * 330.00246 * 3 2 1 29 29 H 0.96998 * 119.99869 * 179.97438 * 7 6 4 30 30 H 1.07997 * 125.06555 * 0.02562 * 15 14 12 31 31 H 1.09000 * 115.54903 * 334.33184 * 19 18 17 32 32 H 1.08994 * 117.49971 * 359.97438 * 20 19 18 33 33 H 1.08995 * 117.49574 * 145.02456 * 20 19 18 34 34 H 1.09003 * 117.49672 * 252.51002 * 21 20 19 35 35 H 1.08997 * 117.49973 * 107.48805 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7037 1.4209 5 1 2.0981 1.0958 2.2417 6 6 3.1260 2.8779 1.6728 7 7 3.5525 3.6185 0.6731 8 14 3.4379 3.4169 3.4339 9 1 2.8608 2.4164 4.3673 10 1 4.9006 3.5257 3.6666 11 1 2.7998 4.7373 3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3496 -1.1710 0.1270 14 6 1.4146 -2.4311 -0.1511 15 6 1.9984 -3.6170 0.0355 16 16 0.8313 -4.9057 -0.2278 17 6 -0.4267 -3.7333 -0.5979 18 7 -1.6619 -4.0240 -0.9155 19 6 -2.0904 -5.4231 -0.9851 20 6 -3.4815 -5.7084 -1.5547 21 6 -3.2228 -5.8623 -0.0545 22 7 0.0840 -2.4814 -0.5019 23 1 -0.4449 -1.6854 -0.6674 24 1 -0.3634 -0.1020 -1.0226 25 1 -0.3633 -0.8346 0.5996 26 1 -0.3633 0.9365 0.4230 27 1 3.1499 1.1383 -0.5139 28 1 1.6084 2.0283 -0.5138 29 1 4.0287 4.4448 0.8504 30 1 3.0328 -3.7631 0.3093 31 1 -1.3022 -6.1463 -1.1948 32 1 -4.0780 -4.8551 -1.8772 33 1 -3.6087 -6.6194 -2.1394 34 1 -3.1798 -6.8746 0.3475 35 1 -3.6488 -5.1102 0.6094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540883235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:24 Heat of formation + Delta-G solvation = 69.383343 kcal Electronic energy + Delta-G solvation = -19208.563109 eV Core-core repulsion = 16142.709931 eV Total energy + Delta-G solvation = -3065.853178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63552 -38.31880 -37.36750 -35.32695 -33.40863 -32.69263 -29.99768 -28.42963 -26.43143 -25.21164 -23.05765 -22.53835 -21.65744 -21.00864 -19.50114 -18.10685 -17.23564 -16.70226 -16.27111 -15.51346 -15.36533 -14.97014 -14.77955 -14.32235 -14.10581 -13.89645 -13.15078 -12.99768 -12.84204 -12.33810 -11.97260 -11.76881 -11.64113 -11.58034 -11.28938 -10.97752 -10.78971 -10.71022 -10.28081 -10.12868 -9.79509 -9.62744 -9.49996 -9.35057 -8.53663 -7.99887 -7.34445 -6.14684 -4.20066 1.12403 1.15094 1.64527 1.88601 2.62285 3.25017 3.32812 3.35971 3.49064 3.69601 3.78927 4.31802 4.37160 4.69218 4.75134 4.86958 5.09035 5.18694 5.20868 5.39995 5.41536 5.44109 5.56743 5.62521 5.75691 5.89416 5.96682 6.34978 6.81404 6.91525 7.18101 7.28394 7.61614 7.80445 8.02154 8.08294 8.56820 8.84716 9.45545 10.93566 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.003752 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.563506 B = 7461.064193 C = 7775.392623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.591 5.591 3 C 0.246 3.754 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.565 3.435 13 O -0.508 6.508 14 C 0.084 3.916 15 C -0.192 4.192 16 S 0.009 5.991 17 C 0.364 3.636 18 N -0.547 5.547 19 C 0.018 3.982 20 C -0.155 4.155 21 C -0.173 4.173 22 N -0.620 5.620 23 H 0.433 0.567 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.190 0.810 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.056 -16.188 -3.255 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.322 5.322 3 C 0.127 3.873 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.348 3.652 13 O -0.384 6.384 14 C -0.031 4.031 15 C -0.334 4.334 16 S 0.250 5.750 17 C -0.021 4.021 18 N -0.282 5.282 19 C -0.095 4.095 20 C -0.192 4.192 21 C -0.211 4.211 22 N -0.257 5.257 23 H 0.285 0.715 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.207 0.793 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.061 -16.973 -3.408 20.543 hybrid contribution 0.450 1.539 0.962 1.870 sum -10.611 -15.434 -2.446 18.889 Atomic orbital electron populations 1.22089 0.81968 1.04500 1.00114 1.48152 1.05942 1.07850 1.70269 1.19461 0.92534 0.77206 0.98086 1.21423 1.36997 1.06446 0.92027 0.92172 1.24936 0.95153 0.96274 0.97648 1.69932 1.38174 1.14307 1.30781 0.86404 0.78175 0.78334 0.84301 1.19735 1.20761 1.20910 1.17068 0.87009 0.81769 0.79387 1.90881 1.12574 1.85777 1.49152 1.19668 0.83334 0.96889 1.03179 1.24966 1.04907 0.91937 1.11629 1.85305 1.02476 1.09589 1.77620 1.24280 0.93427 0.88638 0.95754 1.71569 1.09213 1.17343 1.30100 1.22077 0.92546 0.88469 1.06404 1.22972 0.97284 1.02968 0.96021 1.23170 1.02096 1.02305 0.93551 1.43162 1.09512 1.07318 1.65736 0.71503 0.92854 0.91294 0.88652 0.93462 0.94318 0.92602 0.79297 0.88666 0.88107 0.88377 0.88457 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 8.70 59.85 0.52 1.37 16 2 N -0.59 -11.78 2.86 -184.59 -0.53 -12.31 16 3 C 0.25 6.06 5.08 -5.19 -0.03 6.03 16 4 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.57 11.30 7.58 -12.95 -0.10 11.20 16 13 O -0.51 -12.06 16.30 5.16 0.08 -11.98 16 14 C 0.08 1.34 6.35 -83.58 -0.53 0.81 16 15 C -0.19 -2.74 10.64 29.07 0.31 -2.43 16 16 S 0.01 0.11 21.78 -107.50 -2.34 -2.23 16 17 C 0.36 5.00 8.33 -89.66 -0.75 4.26 16 18 N -0.55 -7.48 10.90 -55.00 -0.60 -8.08 16 19 C 0.02 0.21 6.17 -67.93 -0.42 -0.21 16 20 C -0.15 -1.42 10.46 -26.73 -0.28 -1.70 16 21 C -0.17 -1.62 10.46 -26.73 -0.28 -1.90 16 22 N -0.62 -8.69 4.63 -10.73 -0.05 -8.74 16 23 H 0.43 5.57 4.17 -40.82 -0.17 5.39 16 24 H 0.05 0.65 7.12 -51.93 -0.37 0.28 16 25 H 0.07 0.92 5.84 -51.93 -0.30 0.62 16 26 H 0.09 1.40 8.03 -51.93 -0.42 0.98 16 27 H 0.05 1.31 7.53 -51.93 -0.39 0.92 16 28 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.19 2.54 7.97 -52.49 -0.42 2.12 16 31 H 0.10 1.02 7.18 -51.93 -0.37 0.65 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -31.03 313.82 -9.06 -40.09 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.10 Total: 2.88 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.97 Total: 4.28 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.44 Total: -54.04 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.34 Total: -2.23 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.03 -9.06 -40.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540883235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.475 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds